aqsc 0.1.10
Constructs QS stellarator equilibrium to all orders.

# pyAQSC
This code constructs globally quasi-symmetric stellarator equilibria with
anisotropic pressure near axis expansion to any order.

## Documentations
[Click here to read pyAQSC documentations.](https://pyaqsc.readthedocs.io/en/latest/)

## Dependencies
The python codes requires Numpy, Matplotlib, and JAX. To install a JAX version 
matching your hardware, see the official 
[JAX installation guide](https://jax.readthedocs.io/en/latest/installation.html).

The Maxima notebooks requires wxMaxima to view. The notebooks are not required to
run the main code, but contains source expressions much of code is parsed from.

## Repository structure and files
```
├── README.MD
├── test_data_eduardo/              -> Known leading order terms for some equilibria.
├── docs/                           -> Documentations
├── dist/                           -> Built python package
├── examples/                       -> Jupyter notebooks with use cases for the code.
├── magnetic_recursion_relations/   -> Maxima notebooks for iterating the
│   │                                  magnetic equations
│   ├── <Quantity name>.wxmx        -> Maxima notebooks for the recursion relations.
│   └── general_formulae/           -> Maxima notebooks directly expanding
│                                      the governing equations. for reference only.
├── MHD_recursion_relations/        -> Maxima notebooks for iterating the
│   │                                  magnetic and force balance equations
│   ├── looped.lisp                 -> Variables associated with the "looped equation"[2].
│   │                                  see Looped.wxmx and Looped study simplified.wxmx
│   │                                  see for details.
│   ├── <Quantity name>.wxmx        -> ...
│   └── general_formulae/           -> ...
│                                  
├── maxima_scripts/                 -> Maxima libraries
│   ├── near_axis_expansion.mac     -> Stores the governing equations and
│   │                                  variable dependencies.
│   ├── power_mode_matching/        -> A standalone, symbolic infinite/finite
│   │   │                              power/Fourier series order/mode matcher.
│   │   ├── power_matching.mac      -> The power series order matcher
│   │   └── trig_fourier_or... .mac -> The Fourier series mode matcher
│   ├── python_parser.mac           -> A code translating maxima summations
│   │                                  to python codes. Works with
│   │                                  python_source/math_utilities.py
│   ├── sbatch_maxima.mac           -> A code generating slurm jobscripts for
│   │                                  evaluating maxima expressions in parallel
│   └── test_cases/                 -> Test cases for Maxima scripts.
└── src/aqsc/                       -> Python source for the main code.
    ├── __init__.py                 
    ├── config.py                   -> Configurations. (numerical, run-time, ...)
    ├── equilibrium.py              -> Contains the Equilibrium object that manages
    │                                  the iteration of an equilibrium represented
    │                                  by near axis expansion. Also contains wrappers
    │                                  for methods in parsed/ and MHD_parsed/.
    ├── chiphiepsfunc.py            -> A list-like data structure for storing power coeffs.
    ├── chiphifunc.py               -> A data structure representing f(chi,phi)
    │                                  as chi Fourier coeffs on phi grids, implementation
    │                                  for operators, and some solvers/utilities.
    ├── chiphifunc_test_suite.py    -> Useful functions for testing and plotting.
    ├── math_utilities.py           -> More numerical operations needed to run
    │                                  python methods in python_source/parsed/
    ├── looped_solver.py            -> Solver for the "looped equations" [2, 3]
    ├── parsed/                     -> Parsed expressions for the magnetic-only
    │                                  recursion relations [1]. All generated by notebooks
    ├── looped_coefs/               -> Coefficients in the looped equations.
    └── MHD_parsed/                 -> Parsed expressions for the full (magnetic and
                                               force balance) recursion relations [2]. All
                                               generated by notebooks in MHD_recursion_relations/

```

## References
1. [Weakly Quasisymmetric Near-Axis Solutions to all Orders](https://doi.org/10.1063/5.0076583)
2. [Solving the problem of overdetermination of quasisymmetric equilibrium solutions by near-axis expansions. I. Generalized force balance](https://doi.org/10.1063/5.0027574)
3. [Solving the problem of overdetermination of quasisymmetric equilibrium solutions by near-axis expansions. II. Circular axis stellarator solutions](https://aip.scitation.org/doi/10.1063/5.0027575)
4. [pyQSC](https://github.com/landreman/pyQSC)