frat-brain 1.6.5
Application for ROI fMRI data analysis.
Requires Python: <3.11,>=3.10

<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/fRAT.gif?raw=true" width=500>

# fRAT - fMRI ROI Analysis Tool
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fRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by
converting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.

> fRAT is written using **Python** for **MacOS, Linux and WSL2**.

Documentation:

[Home page](https://fmri-roi-analysis-tool.readthedocs.io)

[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)

[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)

## Citation

**When using fRAT, please include the following citation:**

Howley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200

## Reporting bugs

To report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).

For other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).

## Contributing to the project

If you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).

## Versioning
We use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the
[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.

## Licensing
This project uses the Apache 2.0 license. For the text version of the license see
[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE). 
Prior to version 1.0.0, this project used an MIT license.

## Images
<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/GUI.png?raw=true" title="Example of the fRAT GUI" width=700>

<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/HTML_report.png?raw=true" title="Example of a HTML report output by fRAT" width=600>