semvec/pypi-packages huggingface dataset:
elongation-simulators 1.0.5
High-performance Ribosome simulator and elongation simulator for eukaryotic organism
License: MIT License
Keywords: elongation translation

This package is composed of two high-performance simulators:

A Ribosome simulator, that, given a codon and tRNA concentrations, simulates the internal reactions of the ribosome and their times. It can produce complete data about these reacions: The state of the ribosome, the time it took for each reaction to happen, their frequency, etc.

The other simulator is an elongation simulator: it simulates ribosomes intiating, elongating and terminating a given mRNA. It simulates collisions, ribosome stalling, etc. This tool can also perform simulations in parallel and produce complete information about all ribosomes, and their positions in the mRNA contruct.


Changes
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1.0.0 (unreleased)
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initial release