semvec/pypi-packages huggingface dataset:
biteen-utilities 0.1.3
Tools for working with single-molecule localization data.

# biteen-utilities
A repository for common coding tasks in the Biteen Lab.   
## Methods:
### biteen_io.py:
Reading, writing, and converting between different file types. 
* convert .nd2 to .tif
* convert .nd2 to .npy
* extract ROIs from cellpose .npy into 2d numpy array
* convert cellpose .npy to .mat (SMALL-LABS format)
* convert SMALL-LABS output (*_fits.mat, *_guesses.mat) to pandas DataFrame
* convert SMALL-LABS output (*_fits.mat, *_guesses.mat) to .csv
* convert pandas DataFrame to SMALL-LABS format .mat
* convert SMALL-LABS output to Spot-On format
* convert pandas DataFrame to Spot-On format

### biteen_pandas.py:
Working with tabular data stored in pandas DataFrames.
* calculate individual step data from localizations
* filter localization data by number of localizations in each track
* calculate median step size for each track

### biteen_plots.py
Plotting single-molecule data.
* Plot localizations overlayed on image data, e.g. phase contrast
* Plot trajectories overlayed on image data, e.g. phase contrast

## Future
* dpsp related format conversions
* drift correction with RCC
* using napari
* MSD
* using NOBIAS output
* heatmaps
* rotation to align with cell axes
valyu-pipeline 0.0.26a0
A Python package for accessing the Valyu Data pipeline infrastructure
Requires Python: >=3.8

# Valyu Data Pipeline SDK 🚀

A powerful SDK for seamlessly integrating with the Valyu data pipeline system.

## Overview

This SDK provides tools and utilities to interact with Valyu's data pipeline infrastructure, enabling efficient data processing and transformation workflows.

## Features

- Easy pipeline configuration
- Robust data handling
- Extensible architecture
- Built-in monitoring and logging

## Getting Started

Check out our [documentation](docs/) to get started with the SDK.

## License

This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.
tolmate 0.0.1003
Calculate atom economy for chemical reactions using reaction SMILES
Requires Python: >=3.8

# TolMate

**TolMate** is a Python utility for checking if values fall within specified limits or ranges, with support for tolerance checks. It is perfect for scenarios involving variable monitoring, threshold validations, or any range-based conditions.

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## Features

- **Multiple Range Validation**: Supports checking against one or more ranges.
- **Flexible Tolerance Handling**: Validate values with or without tolerance.
- **Interactive Usage**: Includes a function to prompt users for input.
- **Lightweight and Easy-to-Use**: Simple API for seamless integration into your projects.

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## Installation

You can install **TolMate** using pip:

```bash
pip install tolmate