semvec/pypi-packages huggingface dataset:
protmaster 0.0.3
A powerful proteomic analysis tool
Requires Python: >=3.6

protmaster: Tools For working with proteomics
=====================================================================================================

protmaster is a Python package designed to process high-resolution mass spectrometry data that is coupled with liquid chromatography (LC). Its primary objective is to provide scientists with a user-friendly tool that can be used to read, process, and visualize proteomics data acquired using LC/GC-HRMS .

By utilizing protmaster, users can more easily analyze complex data sets, resulting in a more efficient and streamlined research process. Whether working with LC coupled HRMS data, protmaster is a reliable and effective solution that can help researchers to achieve their scientific goals.

Contributer: Ting Tang
======================
First release date: Sep.17.2024

Update
======
Sep.18.2024: protmaster update Log 0.0.3::

    * update the extract_tic method


protmaster can be installed and import as following:

.. code-block:: python

    pip install protmaster


If you just want to update a new version, please update as following:

.. code-block:: python

    pip install protmaster -U



pyhrms requires major dependencies:
===================================

* numpy>=1.19.2

* pandas>1.3.3

* matplotlib>=3.3.2

* pymzml>=2.4.7

* scipy>=1.6.2

* molmass==2021.6.18

* tqdm>=4.62.3

* openpyxl>=3.0.9

* networkx>=2.6.3

* scikit-learn>=1.0.2

* pyopenms >= 3.0.0


Features
========
protmaster provides following functions:

* Read raw LC/GC-HRMS data in mzML format;
* Powerful and accurate peak picking function for LC/GC HRMS;
* retention time (rt) and mass over Z stands for charge number of ions (m/z) will be aligned based on user defined error range.
* Covert profile data to centroid
* Parallel computing to improve efficiency;
* Interactive visualizations of raw mzML data;
* Supporting searching for Local database and massbank;
* MS quality evaluation for ms data in profile.
* Can process SWATH data.




Licensing
=========

The package is open source and can be utilized under MIT license. Please find the detail in licence file.


Table of Content
~~~~~~~~~~~~~~~~~~~

1. Quick start

* **Feature prioritization :** multi_process()

* **Database matching :** multi_process_database_matching()

* **Result filtering :** post_filter()

* **Result summarizing :** summarize_results()

Note
*********************************************
Please note that the documentation is currently a work in progress, and there is more content that is being written. I apologize for any inconvenience this may cause, but rest assured that I am continually updating the documentation to provide you with the most comprehensive guide to using protmaster.
stylemapper 1.0.2
Provides HTML & CSS information based on keyword arguments and filepaths, including styling, unused classes, and other relevant data.
Keywords: python, css, html, front-end, remove unused css


# StyleMapper
##### Current Version: Beta 1.0.1 [(View project on PyPi)](https://pypi.org/project/stylemapper/)

### **Contents:**
- [Description](#description)
- [Installation](#installation)
- [Usage](#usage)
- [Arguments](#keyword-arguments--choices)
- [Examples](#usages)

## **Description:**
This command line program analyzes CSS & HTML files based on the arguments you run stylemapper with. See below for usage info, and keyword argument info. StyleMapper makes tracking selectors and styles easier for web developers.

## **Installation:**
    pip install stylemapper

## **Usages:**
    stylemapper [-h / --help | -u / --usage]
    stylemapper --compare 'stylesheet_path' 'html_folder_path'
    stylemapper --getcss [choices] 'stylesheet_path'
    stylemapper --gethtml [choices] 'html_file_path' | 'html_folder_path'

<hr>

###  **Keyword Arguments & Choices:**
**'--compare':**  Compare will retrieve all class selectors from CSS stylesheet, and scan the provided HTML files to let you know which selectors are not being used in your HTML code.

**'--getcss':** Scans the stylesheet path you provide for information, which you can select with one, or more, of the required selectors.
  - classes_css: Provides table with all classes, and class count, found in stylesheet.
  - ids: Provides table with all id selectors created in stylesheet
  - media: Provides table with all media queries found in stylesheet
  - elements: Provides table will all examples of element styling found in styleshet.
  - all: Provides a table of all above information

**'--gethtml':** Scans the folder or HTML path you provide for information, which you can select with one, or more, of the required selectors.
  - classes_html: Provides table with all classes, and class count, used in HTML files.
  - ids: Provides table will all id's used in HTML files.
  - inline: Provides table with all instances of inline styling found in HTML files.
  - all: Provides a table of all above information.

**No arguments:** FEATURE COMING SOON *(This will scan your entire working directory from the root folder for all instances of CSS and HTML files, where you are able to  view information based on choices you have selected.)*



### **Path Arguments**:
  - 'stylesheet_path': Path to the CSS stylesheet to be analyzed.
    - If your styles.css sheet is within another folder, please specify this folder first, eg *static/styles.css*.
  - 'template_path_or_template_paths': Path to a folder containing HTML templates or paths to individual template files.

<hr> 

####  Examples:
  1. Analyze a single HTML template for classes and ids:
     stylemapper --gethtml classes_html ids template1.html

  2. Analyze multiple templates in a folder:
     stylemapper --gethtml all html_folder/

  3. Checking for unused CSS classes in HTML files
     stylemapper --compare styles.css html_folder/