semvec/pypi-packages huggingface dataset:
rightpad 0.1.0
A port of the infamous right-pad npm package

# Rightpad
Right pad a string in Python. 
Created to try out making a `pip` package and uploading it to the [Python Package Index (PyPI)](https://pypi.org/).

# Install
`pip install rightpad`

# Usage
```python
from rightpad import right_pad

right_pad("foo", 5)
// => "foo  "

right_pad("foobar", 6)
// => "foobar"

right_pad(1, 2, '0')
// => "10"

right_pad(17, 5, 0)
// => "17000"
```

## Testing
Run `python -m doctest rightpad.py`.
lnschema_bionty 0.44.0
Registries for basic biological entities, coupled to public ontologies.

[![pypi](https://img.shields.io/pypi/v/lnschema_bionty?color=%2334D058&label=pypi%20package)](https://pypi.org/project/lnschema_bionty)

# `lnschema_bionty`: Basic biological entities

`lnschema_bionty` is documented & tested within `lamindb`: [github.com/laminlabs/lamindb](https://github.com/laminlabs/lamindb).
stylish-cmake-parser 0.3.0
Parser for CMake files with the ability to retain the whitespace 'style' after modifying.
Requires Python: >=3.8

![stylish cmake parser logo](docs/Logo.png)

Parser for CMake files with the ability to retain the whitespace "style" after modifying

Originally part of the [`roscompile` ROS package](https://github.com/DLu/roscompile) but now spun out as an independent Python package.

[![PyPI version](https://badge.fury.io/py/stylish-cmake-parser.svg)](https://badge.fury.io/py/stylish-cmake-parser)

    sudo pip3 install stylish-cmake-parser
bionty-base 0.38.0
Bionty.
Requires Python: >=3.8

[![codecov](https://codecov.io/gh/laminlabs/bionty-base/graph/badge.svg?token=8292E0S0Z7)](https://codecov.io/gh/laminlabs/bionty-base)
[![pypi](https://img.shields.io/pypi/v/bionty-base?color=blue&label=pypi%20package)](https://pypi.org/project/bionty-base)

# `bionty-base`

Access public biological ontologies.

- User docs: [here](https://lamin.ai/docs/public-ontologies)
- Developer docs: [here](https://lamin.ai/docs/bionty-base)

## Installation

Bionty-base is a Python package available for ![pyversions](https://img.shields.io/pypi/pyversions/bionty-base)

```shell
pip install bionty-base
```

## Entities

- `Gene` - [Ensembl](https://ensembl.org), [NCBI Gene](https://www.ncbi.nlm.nih.gov/gene)
- `Protein` - [Uniprot](https://www.uniprot.org/)
- `Organism` - [Ensembl Species](https://useast.ensembl.org/info/about/species.html). [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy)
- `CellLine` - [Cell Line Ontology](https://github.com/CLO-ontology/CLO)
- `CellType` - [Cell Ontology](https://obophenotype.github.io/cell-ontology)
- `CellMarker` - [CellMarker](http://xteam.xbio.top/CellMarker)
- `Tissue` - [Uberon](http://obophenotype.github.io/uberon)
- `Disease` - [Mondo](https://mondo.monarchinitiative.org), [Human Disease](https://disease-ontology.org), [ICD](https://www.who.int/standards/classifications/classification-of-diseases)
- `Phenotype` - [Human Phenotype](https://hpo.jax.org/app), [Phecodes](https://phewascatalog.org/phecodes_icd10), [PATO](https://github.com/pato-ontology/pato), [Mammalian Phenotype](http://obofoundry.org/ontology/mp.html), [Zebrafish Phenotype](http://obofoundry.org/ontology/zp.html)
- `Pathway` - [Gene Ontology](https://bioportal.bioontology.org/ontologies/GO), [Pathway Ontology](https://bioportal.bioontology.org/ontologies/PW)
- `ExperimentalFactor` - [Experimental Factor Ontology](https://www.ebi.ac.uk/ols/ontologies/efo)
- `DevelopmentalStage` - [Human Developmental Stages](https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv), [Mouse Developmental Stages](https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv)
- `Drug` - [Drug Ontology](https://bioportal.bioontology.org/ontologies/DRON)
- `Ethnicity` - [Human Ancestry Ontology](https://github.com/EBISPOT/hancestro)
- `BFXPipeline` - largely based on [nf-core](https://nf-co.re)
- `BioSample` - [NCBI BioSample attributes](https://www.ncbi.nlm.nih.gov/biosample/docs/attributes)

Check out [sources.yaml](https://github.com/laminlabs/bionty-base/blob/main/bionty_base/sources/sources.yaml) for details.

Didn't see your favorite source or version? Bionty is [extendable](https://lamin.ai/docs/bionty-base/guide/extend)!

## Entity versions

```python
import bionty_base as bt

# display currently used sources
bt.display_currently_used_sources()

# display all managed sources
bt.display_available_sources()

# local yaml file specifying all managed sources
bt.LOCAL_SOURCES

# access to the Mondo ontology
disease = bt.Disease(source="mondo")

# access to the Human Disease ontology
disease = bt.Disease(source="doid", version="2023-01-30")
```