semvec/pypi-packages huggingface dataset:
pymportx 0.2.0
Pymportx is a Python package designed for fast gene count estimation using transcript quantification files generated by pseudoalignment or quasi-mapping tools. It is a Python adaptation of the widely-used Tximport R package from Bioconductor.
Requires Python: >=3.6
Keywords: bioinformatics, gene expression, transcript quantification, pseudoalignment

# pymportx
`pymportx` is a Python package designed for fast gene count estimation using transcript quantification files generated by pseudoalignment or quasi-mapping tools. It is a Python adaptation of the widely-used [`tximport`](https://bioconductor.org/packages/release/bioc/html/tximport.html) R package from Bioconductor.

## Documentation
Documentation is made available at [https://pymportx.readthedocs.io](https://pymportx.readthedocs.io/en/latest/). 

## Example
```python
from pymportx import salmon

results = salmon.read_salmon(salmon_folder_paths,
                             tx_out=False,
                             tx2gene=tx2gene_file_path,
                             countsFromAbundance='no')
```

## Citation

If you use `pymportx` in your research, please cite the following paper:

Pena Gonzalez, P., Lozano-Paredes, D., Rojo, J. L., Bote-Curiel, L., & Sanchez-Arevalo Lobo, V. J. (2024). Pymportx: Facilitating Next-Generation Transcriptomics Analysis in Python. *bioRxiv*. doi:10.1101/2024.07.12.598873

## License
This project is licensed under the MIT License. See the `LICENSE` file for more details.

## Contact
For more information, you can contact us through victor.sanchezarevalo@ufv.es or luis.bote@urjc.es.
xaiozyre 1.1.6
asyncio-friendly Python bindings for Zyre

# aiozyre
asyncio-friendly Python bindings for [Zyre](https://github.com/zeromq/zyre), an open-source framework for proximity-based peer-to-peer applications.

![build_status](https://travis-ci.org/elijahr/aiozyre.svg?branch=master)

## Installation

```shell
pip install aiozyre
```

Tests run on both Linux and macOS for the following Python versions:
* CPython: 3.6.4, 3.7.0, 3.8.0
* PyPy: 7.2.0 (3.6.9)

CPython 3.6.3 and lower are not supported due to [this bug](https://bugs.python.org/issue20891).

## Usage

See the [example peer-to-peer chat client](https://github.com/elijahr/aiozyre/blob/master/examples/chatter.py).

## Contributing

Pull requests are welcome, please file any issues you encounter.

## Changelog

### v1.1.6 (2024-09-23)

* Support for Python 3.12

### v1.1.5 (2020-07-22)

* Fix memory leak where zlist items were not being freed
* Fix egg installation issue by passing zip_safe=False

### v1.1.4 (2020-05-23)

* Handle `SILENT` message
aiozyre-xtel 1.1.6
asyncio-friendly Python bindings for Zyre

# aiozyre
asyncio-friendly Python bindings for [Zyre](https://github.com/zeromq/zyre), an open-source framework for proximity-based peer-to-peer applications.

![build_status](https://travis-ci.org/elijahr/aiozyre.svg?branch=master)

## Installation

```shell
pip install aiozyre
```

Tests run on both Linux and macOS for the following Python versions:
* CPython: 3.6.4, 3.7.0, 3.8.0
* PyPy: 7.2.0 (3.6.9)

CPython 3.6.3 and lower are not supported due to [this bug](https://bugs.python.org/issue20891).

## Usage

See the [example peer-to-peer chat client](https://github.com/elijahr/aiozyre/blob/master/examples/chatter.py).

## Contributing

Pull requests are welcome, please file any issues you encounter.

## Changelog

### v1.1.6 (2024-09-23)

* Support for Python 3.12

### v1.1.5 (2020-07-22)

* Fix memory leak where zlist items were not being freed
* Fix egg installation issue by passing zip_safe=False

### v1.1.4 (2020-05-23)

* Handle `SILENT` message