semvec/pypi-packages huggingface dataset:
transformerslocal 0.0.4
Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model.
License: MIT
Requires Python: <3.11,>=3.7.12

# Reproduce for scPEFT

## Repository 

- Scripts to reproduce and visualise results obtained in the manuscript we have a dedicated
  repository [scPEFT_reproduction](https://github.com/BeacherKim/scPEFT_reproduction).

## Available datasets

### Datasets for cell type identification
- M.S.: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/celltype_identification/ms?csf=1&web=1&e=udxeon)

- COVID-19: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/celltype_identification/COVID-19?csf=1&web=1&e=WkrpQk)

- NSCLC: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/celltype_identification/NSCLC?csf=1&web=1&e=yYgJkq)

### Datasets for cross species
- Monkey: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cross_species/MergedMonkey?csf=1&web=1&e=KcPkjK)

- C. Elegans: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cross_species/elegans?csf=1&web=1&e=GDmxFX)

- Mouse_10x: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cross_species/mouse_10x?csf=1&web=1&e=nz2NFP)

- Mouse_115746: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cross_species/mouse_115746?csf=1&web=1&e=T7hqEE)

- Mouse_smart: [link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cross_species/mouse_smart?csf=1&web=1&e=V4UERl)

### Datasets for marker gene detection
- COVID-19:[link](https://mailmissouri-my.sharepoint.com/:u:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/marker_gene_detection/COVID-19_test0.h5ad?csf=1&web=1&e=vWYHSb)

### Datasets for batch correction
- PBMC 10K:[link](https://mailmissouri-my.sharepoint.com/:u:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/batch_correction/PBMC_10K.h5ad?csf=1&web=1&e=MuONRg)

- Perirhinal Cortex: [link](https://mailmissouri-my.sharepoint.com/:u:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/batch_correction/Perirhinal%20Cortex.h5ad?csf=1&web=1&e=zVCyWk)

- covid_batch: [link](https://mailmissouri-my.sharepoint.com/:u:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/batch_correction/covid_subsampled.h5ad?csf=1&web=1&e=W3ngyI)

### Datasets for cell population discovery
- BMMC&CD34+ enriched data: [link](https://mailmissouri-my.sharepoint.com/:u:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/cell_population_discovery/immune.h5ad?csf=1&web=1&e=yTgdxl)


### Datasets for perturbation
- Adamson:[link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/perturbation/adamson?csf=1&web=1&e=NINPQG)

- Norman:[link](https://mailmissouri-my.sharepoint.com/:f:/r/personal/hefe_umsystem_edu/Documents/scPEFT_datasets/perturbation/norman?csf=1&web=1&e=1ZMm3y)