semvec/pypi-packages huggingface dataset:
fugassem 0.3.8
FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in microbiome
License: MIT
Keywords: microbial, microbiome, bioinformatics, microbiology, metagenomic, metatranscriptomic, function prediction, unknown proteins, microbial dark matter, fugassem, anadama2

FUGAsseM is a computational tool based on a “guild by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-based data, including co-expression patterns from metatranscriptomics, co-localization patterns from metagenomic assemblies, homologous-based annotation, domain-based annotations, etc.
hive-mcp 0.2.0
A command-line interface for interacting with MCP (Model Context Protocol) servers
License: MIT
Requires Python: >=3.9

# Hive MCP

A command-line interface for interacting with MCP (Model Context Protocol) servers.

## Features

- **Ask questions** to any MCP server directly from the command line
- **Manage server configurations** with easy add, remove, and list operations
- **Set default servers** for quick access
- **Import and export** server configurations

## Installation

```bash
# From the source directory
pip install -e .

# Or once published
pip install hive-mcp
```

## Usage

### Asking Questions

```bash
# Ask a question to the default server
hive-mcp ask "What is the best AI tool for coding?"

# Ask a question to a specific server by name
hive-mcp ask --server team-mcp "What tools are being used in this team room?"

# Ask a question to a specific server by URL
hive-mcp ask --url https://mcp-server.example.com/sse "What is the weather today?"
```

### Managing Servers

```bash
# List all configured servers
hive-mcp servers list

# Add a new server
hive-mcp servers add my-server https://mcp-server.example.com/sse

# Remove a server
hive-mcp servers remove my-server

# Set the default server
hive-mcp servers set-default tweet-finder-mcp

# Export server configuration
hive-mcp servers export --file servers.json

# Import server configuration
hive-mcp servers import servers.json
```

## Configuration

The CLI stores its configuration in `~/.config/hive_mcp/config.json`. This file is created automatically when you first run the CLI, and it contains:

- A list of configured servers with their URLs
- The default server to use when none is specified

## Requirements

- Python 3.9 or higher
- `hive-mcp` package (installed automatically as a dependency)

## License

MIT