semvec/pypi-packages huggingface dataset:
ComSeg 1.8.5
single cell RNA profiling analysis of imaging-based spatial transcriptomics data
Requires Python: >=3.8


<img src="./comseg.png" width="650" height="263">

# News 10/08/24
- Update with comseg 1.8.1: Compatibility with SOPA : (https://gustaveroussy.github.io/sopa/tutorials/comseg/)

# Support

If you have any questions relative to the package or bug, please open an issue in this repository.

# ComSeg framework

A detail documentation is available at https://comseg.readthedocs.io/


# Single cell spatial RNA profiling 

ComSeg is an algorithm for single cell spatial RNA profiling in image-based transcriptomic data.

It takes as input a csv with the spot coordinates and output an anndata 
object with the  genes expression and coordinates of each cell.

### Citation 

Defard, T., Laporte, H., Ayan, M. et al. A point cloud segmentation framework for image-based spatial transcriptomics. Commun Biol 7, 823 (2024). https://doi.org/10.1038/s42003-024-06480-3