KrakenParser 0.5.0
A collection of scripts designed to process Kraken2 reports and convert them into CSV format.
Requires Python: >=3.6

# KrakenParser: Convert Kraken2 Reports to CSV

## Overview
KrakenParser is a collection of scripts designed to process Kraken2 reports and convert them into CSV format. This pipeline extracts taxonomic abundance data at six levels:
- **Phylum**
- **Class**
- **Order**
- **Family**
- **Genus**
- **Species**

You can run the entire pipeline with **a single command**, or use the scripts **individually** depending on your needs.

🔗 Please visit [KrakenParser wiki](https://github.com/PopovIILab/KrakenParser/wiki) page

## Output example

### Total abundance output

`counts_phylum.csv` parsed from 7 kraken2 reports of metagenomic samples using `KrakenParser`:

```
Sample_id,Caldithrix abyssi,Caldisericum exile,Thermosulfidibacter takaii,Candidatus Endomicrobium trichonymphae,Endomicrobium proavitum,Elusimicrobium minutum,Candidatus Chazhemtobacterium aquaticus,Candidatus Fervidibacter sacchari,Lentisphaera profundi,Kiritimatiella glycovorans,Tichowtungia aerotolerans,Vulcanimicrobium alpinum,Atribacter laminatus,Dictyoglomus turgidum,Nitrospina watsonii,Desulfurispirillum indicum,Coprothermobacter proteolyticus,Thermovibrio ammonificans,Desulfurobacterium thermolithotrophum,Sulfurihydrogenibium azorense,Sulfurihydrogenibium sp. YO3AOP1,Persephonella marina,Thermocrinis minervae,Aquifex aeolicus,Hydrogenobaculum sp. Y04AAS1,Hydrogenobaculum sp. HO,Thermotoga profunda,Pseudothermotoga thermarum,Pseudothermotoga hypogea,Fervidobacterium nodosum,Thermosipho africanus,Thermosipho ferrireducens,Thermosipho melanesiensis,Oceanotoga sp. DSM 15011,Defluviitoga tunisiensis,Petrotoga mobilis,Tepiditoga spiralis,Marinitoga sp. 1137,Athalassotoga saccharophila,Mesotoga prima,Mesotoga infera,Kosmotoga pacifica,Kosmotoga olearia,Halobacteriovorax marinus,Halobacteriovorax sp. BALOs 7,Bacteriovorax stolpii,Peredibacter starrii,Spirobacillus cienkowskii,Pigmentibacter sp. JX0631,Fluviispira sanaruensis,Silvanigrella aquatica,Micavibrio aeruginosavorus,Pseudobdellovibrio exovorus,Bdellovibrio sp. NC01,Bdellovibrio bacteriovorus,Thermodesulfovibrio yellowstonii,Dissulfurispira thermophila,Leptospirillum ferrooxidans,Nitrospira tepida,Candidatus Nitrospira inopinata,Nitrospira japonica,Deferribacter desulfuricans,Calditerrivibrio nitroreducens,Mucispirillum schaedleri,Flexistipes sinusarabici,Denitrovibrio acetiphilus,Geovibrio thiophilus,Aminobacterium colombiense,Aminobacterium sp. MB27-C1,Aminithiophilus ramosus,Acetomicrobium mobile,Pyramidobacter sp. YE332,Pyramidobacter piscolens,Jonquetella anthropi,uncultured Dethiosulfovibrio sp.,Thermanaerovibrio acidaminovorans,Aminomonas paucivorans,Cloacibacillus porcorum,Nannocystis poenicansa,Haliangium ochraceum,Labilithrix luteola,Polyangium aurulentum,Chondromyces crocatus,Pajaroellobacter abortibovis,Sorangium cellulosum,Sandaracinus amylolyticus,Cystobacter fuscus,Archangium violaceum,Stigmatella aurantiaca,Myxococcus xanthus,Myxococcus sp. SDU36,Myxococcus stipitatus,Myxococcus hansupus,Pyxidicoccus parkwaysis,Vulgatibacter incomptus,Anaeromyxobacter oryzae,Anaeromyxobacter paludicola,Anaeromyxobacter sp. Fw109-5,Luteitalea pratensis,Chloracidobacterium validum,Candidatus Korobacter versatilis,Alloacidobacterium dinghuense,Occallatibacter riparius,Acidobacterium capsulatum,Acidisarcina polymorpha,Granulicella sp. WH15,uncultured Paludibaculum sp.,Sulfidibacter corallicola,Thermotomaculum hydrothermale,Mesoterricola sediminis,Mesoterricola silvestris,uncultured Holophaga sp.,Geothrix sp. 21YS21S-4,Geothrix sp. PMB-07,Candidatus Chromulinivorax destructor,Candidatus Babela massiliensis,Candidatus Bipolaricaulis anaerobius,Candidatus Mycosynbacter amalyticus,Candidatus Nanosynbacter featherlites,Candidatus Saccharimonas aalborgensis,Candidatus Minimicrobia vallesae,Candidatus Absconditicoccus praedator,Haliovirga abyssi,Ilyobacter polytropus,uncultured Ilyobacter sp.,Cetobacterium somerae,Fusobacterium pseudoperiodonticum,Fusobacterium ulcerans,Fusobacterium varium,Fusobacterium gonidiaformans,Fusobacterium polymorphum,Fusobacterium necrophorum,Fusobacterium vincentii,Fusobacterium nucleatum,Fusobacterium animalis,Fusobacterium hwasookii,Sneathia vaginalis,Pseudoleptotrichia goodfellowii,Streptobacillus moniliformis,Sebaldella termitidis,Leptotrichia hofstadii,Leptotrichia buccalis,Leptotrichia wadei,Leptotrichia trevisanii,Leptotrichia hongkongensis,Leptotrichia sp. oral taxon 498,Leptotrichia sp. oral taxon 221,Leptotrichia sp. oral taxon 212,Leptotrichia sp. oral taxon 847,Leptotrichia shahii,Dissulfurimicrobium hydrothermale,Microvenator marinus,Bradymonas sediminis,Persicimonas caeni,Brachyspira murdochii,Brachyspira hyodysenteriae,Brachyspira pilosicoli,Thermospira aquatica,Turneriella parva,Leptospira tipperaryensis,Leptospira santarosai,Leptospira mayottensis,Leptospira borgpetersenii,Leptospira noguchii,Leptospira interrogans,Leptospira sp. GIMC2001,Leptospira kobayashii,Breznakiella homolactica,Parasphaerochaeta coccoides,uncultured Sphaerochaeta sp.,Sediminispirochaeta smaragdinae,Oceanispirochaeta crateris,Marispirochaeta aestuarii,Marispirochaeta sp.,Salinispira pacifica,Candidatus Haliotispira prima,Entomospira culicis,Thiospirochaeta perfilievii,Spirochaeta thermophila,Spirochaeta africana,Brucepastera parasyntrophica,Treponema primitia,Treponema denticola,Treponema phagedenis,Treponema bryantii,Treponema pedis,Treponema sp. OMZ 791,Treponema brennaborense,Treponema socranskii,Treponema ruminis,Treponema succinifaciens,Treponema vincentii,Treponema peruense,Treponema pallidum,Treponema saccharophilum,Borrelia miyamotoi,Borrelia sp. HM,Borrelia sp. P9F1,Borreliella mayonii,Borreliella sinica,Borreliella tanukii,Borreliella bissettiae,Borreliella kurtenbachii,Borreliella lusitaniae,Borreliella afzelii,Borreliella carolinensis,Borreliella andersonii,Borreliella garinii,Candidatus Velamenicoccus archaeovorus,Simkania negevensis,Candidatus Neptunochlamydia sp. REUL1,Candidatus Rhabdochlamydia porcellionis,Parachlamydia acanthamoebae,Candidatus Protochlamydia amoebophila,Candidatus Protochlamydia naegleriophila,Chlamydia abortus,Chlamydia psittaci,Chlamydia suis,Chlamydia pecorum,Methylacidimicrobium sp. B4,Candidatus Xiphinematobacter sp. Idaho Grape,Candidatus Pelagisphaera phototrophica,Rubellicoccus peritrichatus,Coraliomargarita algicola,Coraliomargarita akajimensis,Opitutus terrae,Lacunisphaera limnophila,Actomonas aquatica,Termitidicoccus mucosus,Synoicihabitans lomoniglobus,Akkermansia glycaniphila,Roseimicrobium sp. ORNL1,Luteolibacter luteus,Luteolibacter sp. SL250,Verrucomicrobium sp. GAS474,Verrucomicrobium spinosum,Sulfuriroseicoccus oceanibius,Fontisphaera persica,Candidatus Kuenenia stuttgartiensis,Candidatus Uabimicrobium amorphum,Humisphaera borealis,Mucisphaera calidilacus,Poriferisphaera corsica,Phycisphaera mikurensis,Limihaloglobus sulfuriphilus,Sedimentisphaera cyanobacteriorum,Sedimentisphaera salicampi,Anaerohalosphaera lusitana,Tautonia plasticadhaerens,Singulisphaera acidiphila,Aquisphaera giovannonii,Paludisphaera borealis,Isosphaera pallida,Telmatocola sphagniphila,Urbifossiella limnaea,Frigoriglobus tundricola,Limnoglobus roseus,Tuwongella immobilis,Gemmata massiliana,Gemmata obscuriglobus,Thermogutta terrifontis,Aeoliella mucimassa,Bythopirellula goksoeyrii,Pirellulimonas nuda,Botrimarina mediterranea,Lacipirellula parvula,Lacipirellula limnantheis,Adhaeretor mobilis,Rosistilla ulvae,Lignipirellula cremea,Blastopirellula sp. J2-11,Anatilimnocola aggregata,Aureliella helgolandensis,Mariniblastus fucicola,Rubripirellula lacrimiformis,Stieleria maiorica,Stieleria varia,Pirellula sp. SH-Sr6A,Planctoellipticum variicoloris,Stratiformator vulcanicus,Thalassoglobus polymorphus,Polystyrenella longa,Planctomyces sp. SH-PL14,Planctomyces sp. SH-PL62,Caulifigura coniformis,Rubinisphaera brasiliensis,Calycomorphotria hydatis,Symmachiella dynata,Alienimonas californiensis,Fuerstiella marisgermanici,Gimesia chilikensis,Gimesia fumaroli,Gimesia maris,Gimesia alba,Candidatus Desulfofervidus auxilii,Desulfomonile tiedjei,Desulfobacca acetoxidans,Desulfoglaeba alkanexedens,Syntrophobacter fumaroxidans,Desulfarculus baarsii,Desulfoferula mesophilus,Desulfatibacillum aliphaticivorans,Desulfoluna limicola,Desulfosarcina ovata,Desulfosarcina sp. BuS5,Desulfosarcina alkanivorans,Desulfococcus multivorans,Desulfonema magnum,Desulfonema limicola,Desulfosudis oleivorans,Desulfobacula toluolica,Desulfobacter hydrogenophilus,uncultured Desulfobacter sp.,Desulforapulum autotrophicum,Syntrophus aciditrophicus,Thermodesulfatator indicus,Caldimicrobium thiodismutans,Thermosulfurimonas marina,Thermodesulfobacterium geofontis,Thermosulfuriphilus ammonigenes,Geotalea uraniireducens,Citrifermentans bemidjiense,Trichlorobacter lovleyi,Geomonas sp. RF6,Geobacter pickeringii,Geobacter sp. FeAm09,Geoalkalibacter halelectricus,Geoalkalibacter subterraneus,uncultured Desulfuromusa sp.,Pelobacter propionicus,uncultured Desulfuromonas sp.,Desulfuromonas versatilis,Desulfuromonas sp. DDH964,Desulfuromonas sp. AOP6,Desulfuromonas thiophila,Syntrophotalea acetylenica,Syntrophotalea carbinolica,Syntrophotalea acetylenivorans,Desulfogranum marinum,Desulfurivibrio alkaliphilus,Desulfolithobacter dissulfuricans,Candidatus Electrothrix sp. GW3-4,Desulfobulbus oligotrophicus,Desulfobulbus oralis,Desulfobulbus propionicus,uncultured Desulfobulbus sp.,Desulfofustis limnaeus,Desulfopila sp. IMCC35008,Desulfotalea psychrophila,Desulfosediminicola flagellatus,Desulfosediminicola ganghwensis,Desulfohalobium retbaense,Desulfomicrobium orale,Thermodesulfomicrobium sp. WS,Desulfolutivibrio sulfoxidireducens,Oleidesulfovibrio alaskensis,Oceanidesulfovibrio marinus,uncultured Mailhella sp.,Salidesulfovibrio onnuriiensis,Nitratidesulfovibrio vulgaris,Maridesulfovibrio sp.,Desulfocurvibacter africanus,Lawsonia intracellularis,Megalodesulfovibrio gigas,uncultured Pseudodesulfovibrio sp.,Pseudodesulfovibrio mercurii,Pseudodesulfovibrio sp. zrk46,Pseudodesulfovibrio tunisiensis,Pseudodesulfovibrio profundus,Pseudodesulfovibrio portus,Pseudodesulfovibrio piezophilus,Pseudodesulfovibrio sp. 5S69,Pseudodesulfovibrio cashew,Pseudodesulfovibrio aespoeensis,Taurinivorans muris,Desulfovibrio piger,Desulfovibrio ferrophilus,Desulfovibrio sp. G11,Solidesulfovibrio carbinolicus,Hippea maritima,Nautilia sp. PV-1,Caminibacter mediatlanticus,Caminibacter pacificus,Nitratiruptor sp. YY09-18,Nitrosophilus labii,Nitratifractor salsuginis,Sulfurovum mangrovi,Sulfurovum indicum,Poseidonibacter lekithochrous,Malaciobacter pacificus,Malaciobacter halophilus,Arcobacter acticola,Aliarcobacter lanthieri,Aliarcobacter cibarius,Aliarcobacter cryaerophilus,Aliarcobacter skirrowii,Halarcobacter bivalviorum,Halarcobacter ebronensis,Halarcobacter anaerophilus,Sulfurimonas aquatica,Sulfurimonas lithotrophica,Sulfurimonas paralvinellae,Sulfurimonas hydrogeniphila,Sulfurimonas sp. HSL-3221,Sulfurimonas sp.,Sulfurimonas marina,Hydrogenimonas urashimensis,Hydrogenimonas cancrithermarum,Sulfurospirillum cavolei,Sulfurospirillum sp. 1612,Sulfurospirillum multivorans,Sulfurospirillum diekertiae,Wolinella succinogenes,Helicobacter apodemus,Helicobacter acinonychis,Helicobacter mastomyrinus,Helicobacter enhydrae,Helicobacter suis,Helicobacter felis,Helicobacter heilmannii,Helicobacter hepaticus,Helicobacter himalayensis,Helicobacter mustelae,Helicobacter canis,Helicobacter bizzozeronii,Helicobacter sp. NHP19-003,Helicobacter cinaedi,Helicobacter pylori,Campylobacter sp. RM12651,Campylobacter blaseri,Campylobacter novaezeelandiae,Campylobacter sp. RM5004,Campylobacter sputorum,Campylobacter sp. RM6137,Campylobacter pinnipediorum,Campylobacter hominis,Candidatus Campylobacter infans,Campylobacter gracilis,Campylobacter concisus,Campylobacter canadensis,Campylobacter geochelonis,Campylobacter avium,Campylobacter lari,Campylobacter cuniculorum,Campylobacter coli,Campylobacter jejuni,unidentified bacterial endosymbiont,Candidatus Cloacimonas acidaminovorans,Fibrobacter succinogenes,Gemmatirosa kalamazoonensis,Gemmatimonas phototrophica,Gemmatimonas groenlandica,Cyclonatronum proteinivorum,Salinibacter ruber,Rhodothermus marinus,Rhodocaloribacter litoris,Melioribacter roseus,Ignavibacterium sp.,Chloroherpeton thalassium,Pelodictyon phaeoclathratiforme,Chlorobium phaeobacteroides,Chlorobium limicola,Prosthecochloris sp. SCSIO W1103,Candidatus Sulfidibacterium hydrothermale,Haliscomenobacter hydrossis,Aureispira sp. CCB-E,Aureispira anguillae,Saprospira sp. CCB-QB6,Panacibacter ginsenosidivorans,Ferruginibacter lapsinanis,Arachidicoccus sp. BS20,Arachidicoccus ginsenosidivorans,Niabella yanshanensis,Niabella soli,Phnomibacter ginsenosidimutans,Sediminibacterium sp. TEGAF015,Pseudocnuella soli,Flavisolibacter ginsenosidimutans,Longitalea sp. SCSIO 12813,Rhizosphaericola mali,Filimonas lacunae,Thermoflavifilum sp.,Chitinophaga sp. MD30,Chitinophaga caeni,Chitinophaga niabensis,Chitinophaga sancti,Chitinophaga sp. XS-30,Chitinophaga agri,Aurantibacillus circumpalustris,Olivibacter sp. SDN3,Pseudopedobacter saltans,Anseongella ginsenosidimutans,Solitalea canadensis,Pedobacter heparinus,Pedobacter ginsengisoli,Pedobacter aquae,Pedobacter schmidteae,Pedobacter sp. G11,Pedobacter sp. PACM 27299,Pedobacter mucosus,Pedobacter sp. SL55,Mucilaginibacter robiniae,Mucilaginibacter sp. 14171R-50,Mucilaginibacter mallensis,Mucilaginibacter mali,Mucilaginibacter ginsenosidivorax,Mucilaginibacter rubeus,Mucilaginibacter xinganensis,Mucilaginibacter ginsenosidivorans,Mucilaginibacter ginkgonis,Mucilaginibacter paludis,Mucilaginibacter sp. CSA2-8R,Sphingobacterium psychroaquaticum,Sphingobacterium sp. SRCM116780,Sphingobacterium mizutaii,Sphingobacterium daejeonense,Sphingobacterium sp. E70,Sphingobacterium sp. BN32,Sphingobacterium bambusae,Sphingobacterium sp. PCS056,Sphingobacterium sp. UDSM-2020,Sphingobacterium sp. WM,Sphingobacterium sp. DR205,Sphingobacterium multivorum,Roseivirga spongicola,Reichenbachiella agarivorans,Mangrovivirga cuniculi,Marivirga sp. BDSF4-3,Catalinimonas niigatensis,Tunicatimonas pelagia,Chryseolinea soli,Fulvivirga ulvae,Fulvivirga maritima,Aquirufa lenticrescens,Mongoliitalea daihaiensis,Echinicola soli,Echinicola strongylocentroti,Echinicola marina,Aquiflexum balticum,Belliella baltica,Cyclobacterium marinum,Algoriphagus machipongonensis,Algoriphagus sanaruensis,Fibrella aestuarina,Runella rosea,Larkinella insperata,Tellurirhabdus rosea,Tellurirhabdus bombi,Dyadobacter chenwenxiniae,Dyadobacter sp. NIV53,Dyadobacter fanqingshengii,Dyadobacter fermentans,Dyadobacter chenhuakuii,Leadbetterella byssophila,Marinilongibacter aquaticus,Emticicia oligotrophica,Emticicia sp. 21SJ11W-3,Arcticibacterium luteifluviistationis,Persicobacter psychrovividus,Fulvitalea axinellae,Aureibacter tunicatorum,Cardinium endosymbiont of Encarsia pergandiella,Candidatus Cardinium hertigii,Cardinium endosymbiont of Tipula unca,Candidatus Amoebophilus asiaticus,Adhaeribacter swui,Hymenobacter tibetensis,Hymenobacter volaticus,Hymenobacter canadensis,Hymenobacter sp. DG25A,Hymenobacter oligotrophus,Hymenobacter sp. BRD67,Hymenobacter nivis,Hymenobacter jejuensis,Hymenobacter sedentarius,Hymenobacter sp. YIM 151858-1,Hymenobacter swuensis,Hymenobacter sp. BRD128,Hymenobacter sp. BT18,Pontibacter korlensis,Pontibacter pudoricolor,Pontibacter actiniarum,Pontibacter sp. SGAir0037,Pontibacter sp. G13,Chondrinema litorale,Imperialibacter roseus,Flammeovirga yaeyamensis,Flammeovirga kamogawensis,Flammeovirga pectinis,Rhodocytophaga rosea,Spirosoma sp. SC4-14,Spirosoma montaniterrae,Spirosoma sp. KUDC1026,Spirosoma pollinicola,Spirosoma foliorum,Spirosoma aerolatum,Spirosoma taeanense,Spirosoma oryzicola,Spirosoma radiotolerans,Spirosoma endbachense,Ichthyobacterium seriolicida,Owenweeksia hongkongensis,Parvicella tangerina,Paracrocinitomix mangrovi,Fluviicola taffensis,Candidatus Karelsulcia muelleri,Candidatus Walczuchella endosymbiont of Icerya purchasi,Candidatus Walczuchella monophlebidarum,Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu,Blattabacterium sp. (Mastotermes darwiniensis),Blattabacterium cuenoti,Empedobacter falsenii,Empedobacter brevis,Kaistella antarctica,Candidatus Ornithobacterium hominis,Cruoricaptor ignavus,Chryseobacterium arthrosphaerae,Chryseobacterium bernardetii,Chryseobacterium scophthalmum,Chryseobacterium taklimakanense,Chryseobacterium sp. POL2,Chryseobacterium sp. ZHDP1,Chryseobacterium sp. MEBOG07,Chryseobacterium sp. SG20098,Chryseobacterium indologenes,Chryseobacterium sp. Y16C,Chryseobacterium lactis,Chryseobacterium sp. MYb264,Chryseobacterium piperi,Chryseobacterium shandongense,Chryseobacterium sp. PET-29,Elizabethkingia sp. 2-6,Elizabethkingia anophelis,Apibacter sp. ESL0404,Apibacter raozihei,Bergeyella porcorum,Bergeyella cardium,Riemerella anatipestifer,Weeksella virosa,Faecalibacter sp. LW9,Pukyongia salina,Hwangdonia sp. SCSIO 19198,Oceanihabitans sp. IOP 32,Antarcticibacterium sp. 1MA-6-2,Candidatus Arcticimaribacter forsetii,Lacinutrix venerupis,Aequorivita sp. H23M31,Aegicerativicinus sediminis,Psychroflexus torquis,Sediminicola sp. YIK13,Urechidicola croceus,Flavivirga abyssicola,Tamlana sp. s12,Mesoflavibacter sp. SCSIO 43206,Mariniflexile sp. TRM1-10,Marixanthomonas sp. SCSIO 43207,Christiangramia sp. OXR-203,Christiangramia fulva,Christiangramia flava,Christiangramia oceanisediminis,Algibacter sp. L1A34,Algibacter luteus,Zunongwangia sp. SCSIO 43204,Aestuariibaculum sp. YM273,Olleya sp. HaHaR 3 96,Olleya sp. YS,Olleya sp. Bg11-27,Tenacibaculum finnmarkense,Tenacibaculum pacificus,Tenacibaculum ovolyticum,Tenacibaculum jejuense,Tenacibaculum sp. AHE14PA,Tenacibaculum sp. SZ-18,Euzebyella marina,Robiginitalea biformata,Cellulophaga algicola,Polaribacter vadi,Polaribacter atrinae,Polaribacter sp. HL-MS24,Polaribacter sp. KT25b,Polaribacter haliotis,Imtechella halotolerans,Muricauda sp. SCSIO 65647,Muricauda sp. SCSIO 64092,Abyssalbus ytuae,Croceibacter atlanticus,Siansivirga zeaxanthinifaciens,Wenyingzhuangia fucanilytica,Psychroserpens sp. NJDZ02,Arenibacter algicola,Capnocytophaga sputigena,Capnocytophaga haemolytica,Capnocytophaga stomatis,Capnocytophaga gingivalis,Capnocytophaga canimorsus,Aquimarina sp. AD10,Aquimarina sp. AD1,Aquimarina sp. ERC-38,Lutibacter sp. A80,Lutibacter profundi,Salinimicrobium tongyeongense,Nonlabens dokdonensis,Nonlabens sp. Ci31,Nonlabens ulvanivorans,Nonlabens sp. Hel1 33 55,Aureibaculum algae,Dokdonia sp. 4H-3-7-5,Maribacter halichondriae,Maribacter litopenaei,Maribacter dokdonensis,Flagellimonas maritima,Kordia antarctica,Kordia sp. SMS9,Myroides sp. JBRI-B21084,Myroides albus,Myroides odoratus,Myroides sp. mNGS23 01,Winogradskyella sp. PG-2,Winogradskyella helgolandensis,Winogradskyella forsetii,Flavobacterium galactosidilyticum,Flavobacterium crocinum,Flavobacterium sp. N1736,Flavobacterium bizetiae,Flavobacterium gelatinilyticum,Flavobacterium kingsejongi,Flavobacterium oreochromis,Flavobacterium nitratireducens,Flavobacterium cyclinae,Flavobacterium sp. N2820,Flavobacterium sp. NG2,Flavobacterium limnophilum,uncultured Flavobacterium sp.,Flavobacterium sp. N1994,Flavobacterium agricola,Flavobacterium commune,Flavobacterium johnsoniae,Flavobacterium covae,Flavobacterium channae,Flavobacterium okayamense,Flavobacterium davisii,Flavobacterium sp. I3-2,Flavobacterium sp. M31R6,Flavobacterium sp. IMCC34852,Flavobacterium sp. N3904,Flavobacterium sp. K5-23,Flavobacterium sp. CLA17,Flavobacterium columnare,Flavobacterium psychrophilum,Marinifilum fragile,Labilibaculum sp.,Maribellus comscasis,Mangrovibacterium marinum,uncultured Draconibacterium sp.,uncultured Sunxiuqinia sp.,Aquipluma nitroreducens,Xiashengella succiniciproducens,Alkalitalea saponilacus,uncultured Carboxylicivirga sp.,Salinivirga cyanobacteriivorans,Tenuifilum thalassicum,Paludibacter propionicigenes,Parabacteroides johnsonii,Parabacteroides chongii,Parabacteroides sp. AD58,Parabacteroides goldsteinii,Parabacteroides distasonis,Parabacteroides merdae,Barnesiella viscericola,Coprobacter secundus,Paramuribaculum intestinale,Sodaliphilus pleomorphus,Muribaculum intestinale,Butyricimonas virosa,Odoribacter splanchnicus,uncultured Macellibacteroides sp.,Porphyromonas endodontalis,Porphyromonas pogonae,Porphyromonas asaccharolytica,Porphyromonas sp. oral taxon 275,Porphyromonas crevioricanis,Porphyromonas somerae,Porphyromonas cangingivalis,Porphyromonas gingivalis,uncultured Acetobacteroides sp.,Alistipes communis,Alistipes indistinctus,Alistipes shahii,Alistipes onderdonkii,Alistipes dispar,Alistipes ihumii,Pseudoprevotella muciniphila,Xylanibacter ruminicola,Paraprevotella xylaniphila,Hoylesella enoeca,Hoylesella buccalis,Segatella hominis,Segatella copri,Prevotella sp. E15-22,Prevotella fusca,Prevotella melaninogenica,Prevotella sp. E9-3,Prevotella bivia,Prevotella jejuni,Prevotella communis,Prevotella intermedia,Prevotella denticola,Prevotella herbatica,Prevotella sp. oral taxon 299,Prevotella sp. E13-17,Prevotella sp. Rep29,Prevotella dentalis,Prevotella corporis,Prevotella multiformis,Proteiniphilum saccharofermentans,Petrimonas mucosa,Petrimonas sp.,Dysgonomonas sp. HDW5A,Dysgonomonas capnocytophagoides,Phocaeicola vulgatus,Phocaeicola salanitronis,Phocaeicola dorei,Bacteroides zoogleoformans,Bacteroides luhongzhouii,Bacteroides xylanisolvens,Bacteroides sp. MSB163,uncultured Bacteroides sp.,Bacteroides stercoris,Bacteroides cellulosilyticus,Bacteroides faecis,Bacteroides intestinalis,Bacteroides ovatus,Bacteroides salyersiae,Bacteroides uniformis,Bacteroides sp. DH3716P,Bacteroides thetaiotaomicron,Bacteroides fragilis,Truepera radiovictrix,Deinococcus sp. QL22,Deinococcus psychrotolerans,Deinococcus puniceus,Deinococcus metallilatus,Deinococcus sp. AJ005,Deinococcus aetherius,Deinococcus radiodurans,Deinococcus rubellus,Deinococcus deserti,Deinococcus ficus,Deinococcus sp. AB2017081,Deinococcus geothermalis,Deinococcus peraridilitoris,Deinococcus sp. KNUC1210,Deinococcus gobiensis,Deinococcus maricopensis,Deinococcus wulumuqiensis,Deinococcus radiophilus,Marinithermus hydrothermalis,Allomeiothermus silvanus,Oceanithermus profundus,Meiothermus taiwanensis,Thermus thermophilus,Thermus aquaticus,Thermus scotoductus,Sphaerobacter thermophilus,Thermomicrobium roseum,Fimbriimonas ginsengisoli,Chthonomonas calidirosea,Capsulimonas corticalis,Candidatus Promineifilum breve,Caldilinea aerophila,Thermobaculum terrenum,Tepidiforma flava,Tepidiforma bonchosmolovskayae,Thermoflexus hugenholtzii,Ktedonosporobacter rubrisoli,Dehalogenimonas sp. W,Dehalococcoides mccartyi,Candidatus Lucifugimonas marina,Brevefilum fermentans,Anaerolinea thermophila,Pelolinea submarina,Phototrophicus methaneseepsis,Candidatus Chlorohelix allophototropha,Chloroflexus aurantiacus,Chloroflexus aggregans,Roseiflexus castenholzii,Roseiflexus sp. RS-1,cyanobacterium endosymbiont of Epithemia turgida,cyanobacterium endosymbiont of Epithemia clementina EcSB,Acaryochloris sp. 'Moss Beach',Acaryochloris marina,Thermostichus lividus,Chroococcidiopsis sp. CCMEE 29,Allocoleopsis franciscana,Chamaesiphon minutus,Crinalium epipsammum,Pseudanabaena sp. ABRG5-3,Pseudanabaena galeata,Pseudanabaena sp. PCC 7367,Geitlerinema sp. PCC 7407,Gloeobacter violaceus,Gloeobacter morelensis,Gloeobacter kilaueensis,Anthocerotibacter panamensis,Trichocoleus desertorum,Trichothermofontia sichuanensis,Leptothermofonsia sichuanensis,Kovacikia minuta,Leptolyngbya sp. O-77,Leptolyngbya sp. 7M,Leptolyngbya boryana,Leptolyngbya sp. BL0902,Parasynechococcus marenigrum,Cyanobium sp. NS01,Cyanobium sp. NIES-981,Prochlorococcus sp. MIT 1307,Prochlorococcus marinus,Dactylococcopsis salina,Synechococcus sp. CBW1004,Synechococcus sp. PCC 7502,Synechococcus sp. CBW1107,Synechococcus sp. A15-62,Synechococcus sp. SynAce01,Synechococcus sp. PROS-U-1,Synechococcus sp. NB0720 010,Synechococcus sp. JA-3-3Ab,Synechococcus sp. JA-2-3B'a(2-13),Synechococcus sp. PCC 6312,Synechococcus sp. PCC 7336,Synechococcus sp. NOUM97013,Synechococcus elongatus,Stanieria cyanosphaera,Pleurocapsa sp. FMAR1,Pleurocapsa sp. PCC 7327,Nodosilinea sp. E11,[Phormidium] sp. ETS-05,Phormidium yuhuli,Moorena producens,Oscillatoria nigro-viridis,Oscillatoria acuminata,Limnospira indica,Limnospira fusiformis,Oxynema aestuarii,Planktothrix agardhii,Gloeocapsopsis dulcis,Euhalothece natronophila,Halothece sp. PCC 7418,Microcystis sp. MC19,[Leptolyngbya] sp. PCC 7376,Picosynechococcus sp. PCC 7003,Geminocystis sp. NIES-3708,Geminocystis herdmanii,Geminocystis sp. NIES-3709,Rippkaea orientalis,Crocosphaera subtropica,Gloeothece citriformis,Gloeothece verrucosa,Candidatus Atelocyanobacterium thalassa,Anabaenopsis elenkinii,Nodularia sphaerocarpa,Nodularia spumigena,Cylindrospermopsis curvispora,Cylindrospermopsis raciborskii,Rivularia sp. PCC 7116,Calothrix sp. PCC 6303,Calothrix sp. PCC 7507,Calothrix sp. 336/3,Calothrix sp. NIES-3974,Brasilonema sennae,Tolypothrix sp. PCC 7601,Tolypothrix sp. PCC 7910,Trichormus variabilis,Nostoc sp. C057,Nostoc sphaeroides,Nostoc punctiforme,Nostoc sp. TCL26-01,Nostoc edaphicum,Nostoc sp. PCC 7107,Nostoc flagelliforme,Nostoc sp. UHCC 0302,Nostoc sp. TCL240-02,Nostoc sp. CENA543,Anabaena sp. YBS01,Candidatus Xianfuyuplasma coldseepsis,Hujiaoplasma nucleasis,endosymbiont DhMRE of Dentiscutata heterogama,Candidatus Hepatoplasma crinochetorum,Mycoplasma miroungigenitalium,Mycoplasma sp. 1018B,Mycoplasma sp. Ms02,Mycoplasma wenyonii,Mycoplasma crocodyli,Mycoplasma amphoriforme,Mycoplasma miroungirhinis,Mycoplasma haemofelis,Mycoplasma suis,Mycoplasma ovis,Mycoplasma seminis,Candidatus Mycoplasma haematolamae,Mycoplasma sp. 888,Mycoplasma sp. SG1,Mycoplasma mycoides,Mycoplasma iguanae,Mycoplasma anserisalpingitidis,Mycoplasma phocoenae,Mycoplasma feriruminatoris,Mycoplasma capricolum,Mycoplasma sp. (ex Biomphalaria glabrata),Mycoplasma sp. NEAQ87857,Candidatus Mycoplasma mahonii,Williamsoniiplasma somnilux,Williamsoniiplasma luminosum,Mesoplasma florum,Mesoplasma syrphidae,Mesoplasma lactucae,Spiroplasma alleghenense,Spiroplasma syrphidicola,Spiroplasma ixodetis,Spiroplasma kunkelii,Spiroplasma endosymbiont of Nomada ruficornis,Spiroplasma endosymbiont of Poecilobothrus nobilitatus,Spiroplasma taiwanense,Spiroplasma endosymbiont of Aspidapion aeneum,Spiroplasma endosymbiont of Notiophilus biguttatus,Spiroplasma endosymbiont of Agriotes lineatus,Spiroplasma endosymbiont of Nebria brevicollis,Spiroplasma endosymbiont of Villa modesta,Spiroplasma culicicola,Spiroplasma clarkii,Spiroplasma endosymbiont of Nephrotoma flavescens,Spiroplasma endosymbiont of Monopis laevigella,Spiroplasma helicoides,Spiroplasma sabaudiense,Spiroplasma turonicum,Spiroplasma chinense,Spiroplasma gladiatoris,Spiroplasma platyhelix,Spiroplasma apis,Spiroplasma endosymbiont of Othius punctulatus,Spiroplasma endosymbiont of Zeiraphera isertana,Spiroplasma endosymbiont of Asaphidion curtum,Spiroplasma endosymbiont of Polydrusus cervinus,Spiroplasma endosymbiont of Colias croceus,Spiroplasma endosymbiont of 'Nebria riversi',Spiroplasma endosymbiont of Tiphia femorata,Spiroplasma endosymbiont of Labia minor,Spiroplasma corruscae,Spiroplasma endosymbiont of Crioceris asparagi,Spiroplasma endosymbiont of Sarcophaga carnaria,Spiroplasma endosymbiont of Lasioglossum villosulum,Paracholeplasma brassicae,Alteracholeplasma palmae,Haploplasma axanthum,Mulberry dwarf phytoplasma,Paulownia witches'-broom phytoplasma,Candidatus Phytoplasma rubi,Phytoplasma sp.,Candidatus Phytoplasma australiense,Candidatus Phytoplasma ziziphi,Candidatus Phytoplasma luffae,Candidatus Phytoplasma mali,Mariniplasma anaerobium,Acholeplasma laidlawii,Acholeplasma hippikon,Ureaplasma diversum,Ureaplasma parvum,Ureaplasma urealyticum,Mycoplasmoides pneumoniae,Mycoplasmoides gallisepticum,Mycoplasmoides fastidiosum,Malacoplasma iowae,Malacoplasma penetrans,[Mycoplasma] phocae,Metamycoplasma salivarium,Metamycoplasma alkalescens,Metamycoplasma arthritidis,[Mycoplasma] gypis,Metamycoplasma hominis,Metamycoplasma subdolum,Metamycoplasma orale,Mesomycoplasma lagogenitalium,Mesomycoplasma hyorhinis,Mesomycoplasma ovipneumoniae,[Mycoplasma] mobile,Mesomycoplasma molare,Mesomycoplasma dispar,Mesomycoplasma conjunctivae,Mesomycoplasma neurolyticum,Mycoplasmopsis californica,Mycoplasmopsis synoviae,Mycoplasmopsis bovirhinis,Mycoplasmopsis canis,Mycoplasmopsis pulmonis,Mycoplasmopsis felifaucium,Mycoplasmopsis arginini,Mycoplasmopsis fermentans,Mycoplasmopsis agalactiae,Mycoplasmopsis verecunda,Mycoplasmopsis cynos,Mycoplasmopsis caviae,Mycoplasmopsis felis,Mycoplasmopsis gallopavonis,Mycoplasmopsis bovis,Mycoplasmopsis meleagridis,Mycoplasmopsis pullorum,Mycoplasmopsis equigenitalium,Mycoplasmopsis columbinasalis,Egibacter rhizosphaerae,Euzebya pacifica,Egicoccus halophilus,Miltoncostaea oceani,Thermoleophilum album,Paraconexibacter antarcticus,Capillimicrobium parvum,Conexibacter sp. S30A1,Conexibacter woesei,Conexibacter sp. SYSU D00693,Rubrobacter tropicus,Rubrobacter marinus,Rubrobacter radiotolerans,Rubrobacter xylanophilus,Acidimicrobium ferrooxidans,Ilumatobacter coccineus,Aquihabitans sp. G128,Dermatobacter hominis,Iamia majanohamensis,Iamia sp. SCSIO 61187,Actinomarinicola tropica,Enorma phocaeensis,Collinsella sp. zg1085,Collinsella stercoris,Collinsella aerofaciens,Coriobacterium glomerans,Thermophilibacter mediterraneus,Fannyhessea vaginae,Parafannyhessea umbonata,Lancefieldella sp. Marseille-Q7238,Lancefieldella parvula,Olsenella timonensis,Olsenella uli,Atopobium sp. oral taxon 416,Parolsenella massiliensis,Parolsenella catena,Denitrobacterium detoxificans,Phoenicibacter congonensis,Berryella wangjianweii,Gordonibacter urolithinfaciens,Gordonibacter pamelaeae,Cryptobacterium curtum,Xiamenia xianingshaonis,Raoultibacter timonensis,Arabiibacter massiliensis,Slackia heliotrinireducens,Eggerthella lenta,Eggerthella sp. YY7918,Epidermidibacterium keratini,Jiangella alkaliphila,Acidothermus cellulolyticus,Catenulispora acidiphila,Nakamurella multipartita,Nakamurella antarctica,Candidatus Protofrankia datiscae,Frankia sp. ArI3,Frankia casuarinae,Frankia alni,Modestobacter sp. L9-4,Blastococcus sp. PRF04-17,Blastococcus brunescens,Natronoglycomyces albus,Stackebrandtia nassauensis,Candidatus Nanopelagicus limnes,Candidatus Planktophila versatilis,Candidatus Planktophila lacus,Actinopolyspora erythraea,Jatrophihabitans cynanchi,Jatrophihabitans telluris,Jatrophihabitans sp. GAS493,Spirillospora sp. NBC 00431,Thermomonospora curvata,Thermomonospora amylolytica,Actinoallomurus sp. NBC 01490,Actinomadura sp. WMMA1423,Actinomadura madurae,Streptosporangium roseum,Nonomuraea sp. NBC 01738,Nonomuraea coxensis,Nonomuraea phyllanthi,Microbispora sp. NBC 01189,Microbispora sp. ZYX-F-249,Microbispora hainanensis,Thermobispora bispora,Streptomonospora litoralis,Spiractinospora alimapuensis,Nocardiopsis alba,Nocardiopsis gilva,Nocardiopsis dassonvillei,Thermobifida alba,Thermobifida fusca,Phytohabitans flavus,Solwaraspora sp. WMMA2056,Couchioplanes caeruleus,Dactylosporangium sp. AC04546,Natronosporangium hydrolyticum,Actinoplanes sp. NBC 00393,Actinoplanes sp. SE50,Actinoplanes derwentensis,Actinoplanes missouriensis,Plantactinospora sp. BC1,Plantactinospora sp. BB1,Micromonospora maris,Micromonospora chokoriensis,Micromonospora craniellae,Micromonospora sp. WMMC415,Micromonospora sp. WMMD812,Micromonospora sp. NBC 01699,Micromonospora chalcea,Micromonospora sp. LH3U1,Micromonospora ureilytica,Micromonospora sp. HUAS LYJ1,Micromonospora sp. WMMD882,Micromonospora auratinigra,Micromonospora endophytica,Micromonospora terminaliae,Micromonospora carbonacea,Micromonospora sp. NBC 01813,Micromonospora sp. NBC 00330,Micromonospora profundi,Micromonospora coxensis,Micromonospora sp. NBC 01796,Kutzneria sp. CA-103260,Actinoalloteichus hymeniacidonis,Actinomycetospora sp. NBC 00405,Kibdelosporangium phytohabitans,Allokutzneria albata,Actinosynnema mirum,Actinosynnema pretiosum,Pseudonocardia broussonetiae,Pseudonocardia sp. AL041005-10,Pseudonocardia sp. HH130629-09,Pseudonocardia sp. DSM 110487,Pseudonocardia petroleophila,Pseudonocardia sp. HH130630-07,Pseudonocardia sp. EC080625-04,Lentzea sp. NBC 00516,Umezawaea sp. Da 62-37,Saccharopolyspora sp. ID03-671,Saccharopolyspora gregorii,Saccharopolyspora spinosa,Saccharopolyspora rosea,Saccharopolyspora erythraea,Saccharopolyspora sp. SCSIO 74807,Amycolatopsis thermalba,Amycolatopsis roodepoortensis,Amycolatopsis mediterranei,Amycolatopsis sp. CA-230715,Amycolatopsis sp. FBCC-B4732,Amycolatopsis cynarae,Amycolatopsis sp. NBC 01488,Amycolatopsis sp. AA4,Amycolatopsis sp. NBC 01480,Amycolatopsis sp. EV170708-02-1,Amycolatopsis sp. Hca4,Amycolatopsis coloradensis,Amycolatopsis acidiphila,Saccharomonospora azurea,Saccharomonospora cyanea,Saccharomonospora marina,Actinopolymorpha singaporensis,Kribbella flavida,Kribbella sp. NBC 01484,Kribbella sp. NBC 01245,Kribbella sp. NBC 00482,Raineyella fluvialis,Brooklawnia propionicigenes,Propioniciclava coleopterorum,Microlunatus elymi,Microlunatus soli,Microlunatus sp. Gsoil 973,Microlunatus sagamiharensis,Microlunatus phosphovorus,Arachnia rubra,Arachnia propionica,Auraticoccus monumenti,Vaginimicrobium propionicum,Cutibacterium equinum,Cutibacterium granulosum,Cutibacterium avidum,Cutibacterium modestum,Cutibacterium acnes,Acidipropionibacterium acidipropionici,Acidipropionibacterium jensenii,Tessaracoccus timonensis,Tessaracoccus flavescens,Tessaracoccus sp. MC1865,Tessaracoccus defluvii,Propionibacterium freudenreichii,Propionibacterium acidifaciens,Mumia sp. ZJ1417,Solicola gregarius,Pimelobacter simplex,Friedmanniella luteola,Aeromicrobium duanguangcaii,Aeromicrobium marinum,Aeromicrobium choanae,Nocardioides dokdonensis,Nocardioides humi,Nocardioides euryhalodurans,Nocardioides baekrokdamisoli,Nocardioides sp. TF02-7,Nocardioides sp. CF8,Nocardioides sp. S-1144,Nocardioides sp. Arc9.136,Nocardioides sp. cx-173,Nocardioides sp. InS609-2,Nocardioides sp. zg-1228,Nocardioides sp. HDW12B,Nocardioides sp. Kera G14,Nocardioides sp. NBC 00368,Nocardioides ochotonae,Nocardioides okcheonensis,Nocardioides marmotae,Nocardioides panacisoli,Nocardioides cynanchi,Nocardioides aquaticus,Nocardioides rotundus,Nocardioides sp. B-3,Nocardioides aromaticivorans,Nocardioides faecalis,Changpingibacter yushuensis,Pauljensenia hongkongensis,Flaviflexus equikiangi,Flaviflexus ciconiae,Nanchangia anserum,Actinotignum urinale,Winkia neuii,Arcanobacterium haemolyticum,Arcanobacterium pinnipediorum,Actinobaculum sp. 313,Gleimia hominis,Gleimia europaea,Trueperella bialowiezensis,Trueperella pyogenes,Varibaculum prostatecancerukia,Schaalia odontolytica,Schaalia radingae,Schaalia sp. ZJ405,Schaalia turicensis,Schaalia meyeri,Schaalia sp. 19OD2882,Schaalia sp. JY-X169,Actinomyces sp. oral taxon 169,Actinomyces oris,Actinomyces massiliensis,Actinomyces sp. Z16,Actinomyces trachealis,Actinomyces gaoshouyii,Actinomyces lilanjuaniae,Actinomyces israelii,Actinomyces sp. oral taxon 414,Actinomyces sp. zg-332,Actinomyces sp. 432,Xylanimonas allomyrinae,Dermatophilus congolensis,Gephyromycinifex aptenodytis,Austwickia chelonae,Jonesia denitrificans,Dermacoccus nishinomiyaensis,Allobranchiibius sp. GilTou73,Yimella sp. cx-51,Kytococcus sedentarius,Demequina sediminis,Demequina sp. TMPB413,Sanguibacter sp. HDW7,Ruania suaedae,Ornithinimicrobium flavum,Ornithinimicrobium avium,Ornithinimicrobium ciconiae,Serinicoccus marinus,Pedococcus dokdonensis,Arsenicicoccus sp. oral taxon 190,Intrasporangium calvum,Janibacter sp. CX7,Janibacter sp. YB324,Janibacter limosus,Phycicoccus endophyticus,Brevibacterium luteolum,Brevibacterium spongiae,Brevibacterium pigmentatum,Brevibacterium sandarakinum,Brevibacterium siliguriense,Brevibacterium limosum,Brevibacterium sp. 'Marine',Brevibacterium sp. BRM-1,Brevibacterium sp. JSBI002,Brevibacterium zhoupengii,Brevibacterium sp. CS2,Brevibacterium casei,Brevibacterium aurantiacum,Brevibacterium sp. SMBL HHYL HB1,Tropheryma whipplei,Helcobacillus massiliensis,Dermabacter vaginalis,Dermabacter jinjuensis,Brachybacterium kimchii,Brachybacterium huguangmaarense,Brachybacterium sp. NBEC-018,Brachybacterium sp. SGAir0954,Brachybacterium sp. Z12,Brachybacterium sp. GPGPB12,Brachybacterium halotolerans,Pseudactinotalea sp. HY158,Oerskovia sp. KBS0722,Actinotalea sp. JY-7876,Cellulomonas sp. NS3,Cellulomonas shaoxiangyii,Cellulomonas wangsupingiae,Cellulomonas sp. C5510,Cellulomonas fengjieae,Cellulomonas sp. Y8,Cellulomonas gilvus,Cellulomonas sp. JZ18,Cellulomonas flavigena,Georgenia faecalis,Georgenia sp. TF02-10,Paeniglutamicibacter sp. ZC-3,Psychromicrobium lacuslunae,Sinomonas atrocyanea,Nesterenkonia sp. NBAIMH1,Citricoccus sp. SGAir0253,Pseudoglutamicibacter albus,Auritidibacter ignavus,Pseudarthrobacter sp. L1SW,Pseudarthrobacter sp. NS4,Pseudarthrobacter sulfonivorans,Pseudarthrobacter phenanthrenivorans,Paenarthrobacter sp. JL.01a,Kocuria rhizophila,Kocuria rosea,Kocuria varians,Kocuria palustris,Kocuria indica,Kocuria sp. TGY1127 2,Micrococcus sp. 2A,Micrococcus porci,Micrococcus lylae,Micrococcus terreus,Micrococcus luteus,Glutamicibacter sp. JL.03c,Glutamicibacter sp. ZJUTW,Glutamicibacter halophytocola,Glutamicibacter mishrai,Glutamicibacter creatinolyticus,Glutamicibacter nicotianae,Neomicrococcus aestuarii,Rothia terrae,Rothia amarae,Rothia dentocariosa,Rothia mucilaginosa,Rothia sp. SD9660Na,Rothia kristinae,Rothia aeria,Arthrobacter sp. PAMC25284,Arthrobacter caoxuetaonis,Arthrobacter polaris,Arthrobacter sulfonylureivorans,Arthrobacter koreensis,Arthrobacter woluwensis,Arthrobacter agilis,Arthrobacter zhangbolii,Arthrobacter antioxidans,Arthrobacter sp. FW306-06-A,Arthrobacter sp. StoSoilB22,Arthrobacter jiangjiafuii,Arthrobacter sp. AK-1,Arthrobacter sp. zg-Y1171,Arthrobacter sp. JZ12,Arthrobacter sp. Rue61a,Arthrobacter gengyunqii,Arthrobacter sp. TMP15,Arthrobacter citreus,Arthrobacter alpinus,Arthrobacter crystallopoietes,Arthrobacter sp. StoSoilB13,Arthrobacter sp. ATA002,Arthrobacter sp. Helios,Pontimonas salivibrio,Antiquaquibacter oligotrophicus,Lysinibacter sp. HNR,Agromyces sp. LHK192,Clavibacter sepedonicus,Gulosibacter sediminis,Microterricola viridarii,Microcella humidisoli,Microcella alkaliphila,Rhodoluna lacicola,Cryobacterium sp. 10S3,Glaciihabitans sp. INWT7,Salinibacterium hongtaonis,Salinibacterium sp. M195,Salinibacterium sp. dk2585,Frigoribacterium sp. NBH87,Homoserinibacter sp. YIM 151385,Aquiluna sp. KACHI24,Rathayibacter sp. VKM Ac-2804,Rathayibacter toxicus,Leifsonia sp. PS1209,Leifsonia shinshuensis,Leifsonia sp. ZF2019,Leucobacter tenebrionis,Leucobacter aridicollis,Leucobacter sp. Psy1,Leucobacter triazinivorans,Leucobacter denitrificans,Agrococcus sp. SCSIO52902,Agrococcus carbonis,Agrococcus sp. Marseille-Q4369,Agrococcus jejuensis,Agrococcus beijingensis,Herbiconiux sp. L3-i23,Microbacterium hydrocarbonoxydans,Microbacterium oryzae,Microbacterium testaceum,Microbacterium chengjingii,Microbacterium sp. CGR1,Microbacterium sp. AB,Microbacterium sp. cx-55,Microbacterium sp. str. 'China',Microbacterium limosum,Microbacterium abyssi,Microbacterium lemovicicum,Microbacterium oxydans,Microbacterium schleiferi,Microbacterium amylolyticum,Microbacterium sp. zg-B185,Microbacterium sp. H1-D42,Microbacterium sp. LWO13-1.2,Microbacterium sediminis,Microbacterium esteraromaticum,Microbacterium hominis,Microbacterium resistens,Microbacterium sp. ABRD28,Microbacterium galbinum,Aurantimicrobium photophilum,Curtobacterium sp. MCBA15 004,Curtobacterium sp. Csp1,Curtobacterium sp. MCSS17 015,Curtobacterium sp. MCJR17 020,Curtobacterium sp. MCBA15 012,Curtobacterium sp. 9128,Curtobacterium sp. Csp2,Scardovia inopinata,Gardnerella vaginalis,Parascardovia denticolens,Bifidobacterium sp. ESL0798,Bifidobacterium thermophilum,Bifidobacterium sp. ESL0682,Bifidobacterium pseudocatenulatum,Bifidobacterium dentium,Bifidobacterium breve,Bifidobacterium asteroides,Bifidobacterium sp. ESL0690,Bifidobacterium animalis,Bifidobacterium adolescentis,Bifidobacterium longum,Bifidobacterium pseudolongum,Actinacidiphila glaucinigra,Actinacidiphila bryophytorum,Streptantibioticus cattleyicolor,Yinghuangia sp. ASG 101,Kitas