semvec/pypi-packages huggingface dataset:
genedom 0.2.2
Genetic part standardization
Keywords: genetic, DNA, part, standardization, synthetic biology


Genedom
=======

.. image:: https://github.com/Edinburgh-Genome-Foundry/genedom/actions/workflows/build.yml/badge.svg
    :target: https://github.com/Edinburgh-Genome-Foundry/genedom/actions/workflows/build.yml
    :alt: GitHub CI build status

.. image:: https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/genedom/badge.svg?branch=master
   :target: https://coveralls.io/github/Edinburgh-Genome-Foundry/genedom?branch=master

Genedom is a Python package for managing the domestication of genetic parts, which means
modifying their sequences to make them compatible with a given genetic assembly standard.

Info
----

**PIP installation:**

.. code:: bash

  pip install genedom

**Github Page**

`<https://github.com/Edinburgh-Genome-Foundry/genedom>`_


**License:** MIT, Copyright 2018 Edinburgh Genome Foundry, University of Edinburgh


More biology software
---------------------

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
  :target: https://edinburgh-genome-foundry.github.io/

Genedom is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.
pymc-sphinx-theme 0.16.0
A thin sphinx theme to customize pydata-sphinx-theme consistently cross PyMC websites.
Requires Python: >=3.7

# pymc-sphinx-theme

A thin sphinx theme to customize [pydata-sphinx-theme](https://pydata-sphinx-theme.readthedocs.io) (PST) consistently cross PyMC websites.

## Theme customizations

### Custom search page
PyMC docs are organized as subprojects in readthedocs. The custom search page shows two
search bars, one that triggers the readthedocs search function of the parent project
and that allows searching accross subprojects, and the PST one for local search
within that particular project only.

![Search page with two search bars](./screenshots/double_search_bar.png)

![Flyout of the global readthedocs search](./screenshots/global_rtd_search.png)

### Centralize navbar customization
The version indicator by the logo/project name is added as well as the mastodon, twitter,
youtube and discord icon links. If no icon links are provided by the specific project,
an extra link to the GitHub org is added, otherwise the project provided links are extended
with the four mentioned.

### Extra right sidebar elements
An extra "Support PyMC" link to the NumFOCUS donation page is automatically added,
and the template of the "Edit on GitHub" link is modified so it is not shown in API pages that
are generated from a docstring. The logic of this exclusion is extremely simple, as we use
`:toctree: generated/` as autosummary option, pages with "generated" in their path are excluded.
medcalc 0.3.0
MCP server for Medical Calculation
Requires Python: >=3.12

For testing purpose, use the following script. Models can be changed to sonnet, etc. Type can be changed to zero_shot and one_shot_cot
python -m MedCalcBench.evaluation.run --use OpenAI/gpt-3.5-turbo-mcp-true-gpt-4.1 --type direct_answer