semvec/pypi-packages huggingface dataset:
mafm 0.0.26
multi-ancestry fine-mapping pipeline.
License: MIT
Requires Python: <3.13,>=3.9

# mafm


[![pypi](https://img.shields.io/pypi/v/mafm.svg)](https://pypi.org/project/mafm/)
[![python](https://img.shields.io/pypi/pyversions/mafm.svg)](https://pypi.org/project/mafm/)
[![Build Status](https://github.com/Jianhua-Wang/mafm/actions/workflows/dev.yml/badge.svg)](https://github.com/Jianhua-Wang/mafm/actions/workflows/dev.yml)
[![codecov](https://codecov.io/gh/Jianhua-Wang/mafm/branch/main/graphs/badge.svg)](https://codecov.io/github/Jianhua-Wang/mafm)
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)



Multi-ancestry fine-mapping pipeline with interactive web visualization.


* Documentation: <https://Jianhua-Wang.github.io/mafm>
* GitHub: <https://github.com/Jianhua-Wang/mafm>
* PyPI: <https://pypi.org/project/mafm/>
* Free software: MIT


## Features

- **Multi-ancestry fine-mapping**: Support for multiple fine-mapping tools (SuSiE, FINEMAP, etc.)
- **Meta-analysis capabilities**: Combine results across populations and cohorts
- **Quality control**: Built-in QC metrics and visualizations
- **Interactive web interface**: Explore results through a modern web dashboard
- **Command-line interface**: Easy-to-use CLI for all operations

## Installation

### Basic Installation
```bash
pip install mafm
```

### With Web Visualization
To use the interactive web interface, install with web dependencies:
```bash
pip install mafm[web]
```

## Quick Start

### Command Line Usage

```bash
# Run complete fine-mapping pipeline
mafm pipeline input_loci.txt output_dir/

# Launch web visualization interface
mafm web /path/to/results --port 8080

# View specific loci files
mafm web /path/to/data \
  --allmeta-loci data/allmeta_loci.txt \
  --popumeta-loci data/popumeta_loci.txt \
  --nometa-loci data/nometa_loci.txt
```

### Web Interface

The web interface provides:
- **Home page**: Overview of all loci with interactive filtering
- **Locus pages**: Detailed views with LocusZoom-style plots
- **Quality control**: Comprehensive QC metrics and visualizations
- **Multi-tool comparison**: Compare results across different fine-mapping methods

Access the web interface at `http://localhost:8080` after running `mafm web`.

## Documentation

For detailed documentation, see <https://Jianhua-Wang.github.io/mafm>

## Web Visualization

The web module (`mafm.web`) provides interactive visualization of fine-mapping results. See [mafm/web/README.md](mafm/web/README.md) for detailed usage instructions.
dbt-sqlserver 1.9.0
A Microsoft SQL Server adapter plugin for dbt
License: MIT

# dbt-sqlserver

[dbt](https://www.getdbt.com) adapter for Microsoft SQL Server and Azure SQL services.

The adapter supports dbt-core 0.14 or newer and follows the same versioning scheme.
E.g. version 1.1.x of the adapter will be compatible with dbt-core 1.1.x.

## Documentation

We've bundled all documentation on the dbt docs site:

* [Profile setup & authentication](https://docs.getdbt.com/reference/warehouse-profiles/mssql-profile)
* [Adapter documentation, usage and important notes](https://docs.getdbt.com/reference/resource-configs/mssql-configs)

Join us on the [dbt Slack](https://getdbt.slack.com/archives/CMRMDDQ9W) to ask questions, get help, or to discuss the project.

## Installation

This adapter requires the Microsoft ODBC driver to be installed:
[Windows](https://docs.microsoft.com/en-us/sql/connect/odbc/download-odbc-driver-for-sql-server?view=sql-server-ver16#download-for-windows) |
[macOS](https://docs.microsoft.com/en-us/sql/connect/odbc/linux-mac/install-microsoft-odbc-driver-sql-server-macos?view=sql-server-ver16) |
[Linux](https://docs.microsoft.com/en-us/sql/connect/odbc/linux-mac/installing-the-microsoft-odbc-driver-for-sql-server?view=sql-server-ver16)

<details><summary>Debian/Ubuntu</summary>
<p>

Make sure to install the ODBC headers as well as the driver linked above:

```shell
sudo apt-get install -y unixodbc-dev
```

</p>
</details>

Latest version: ![PyPI](https://img.shields.io/pypi/v/dbt-sqlserver?label=latest%20stable&logo=pypi)

```shell
pip install -U dbt-sqlserver
```

Latest pre-release: ![GitHub tag (latest SemVer pre-release)](https://img.shields.io/github/v/tag/dbt-msft/dbt-sqlserver?include_prereleases&label=latest%20pre-release&logo=pypi)

```shell
pip install -U --pre dbt-sqlserver
```

## Changelog

See [the changelog](CHANGELOG.md)

## Contributing

[![Unit tests](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/unit-tests.yml/badge.svg)](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/unit-tests.yml)
[![Integration tests on SQL Server](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/integration-tests-sqlserver.yml/badge.svg)](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/integration-tests-sqlserver.yml)
[![Integration tests on Azure](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/integration-tests-azure.yml/badge.svg)](https://github.com/dbt-msft/dbt-sqlserver/actions/workflows/integration-tests-azure.yml)

This adapter is community-maintained.
You are welcome to contribute by creating issues, opening or reviewing pull requests or helping other users in Slack channel.
If you're unsure how to get started, check out our [contributing guide](CONTRIBUTING.md).

## License

[![PyPI - License](https://img.shields.io/pypi/l/dbt-sqlserver)](https://github.com/dbt-msft/dbt-sqlserver/blob/master/LICENSE)

## Code of Conduct

This project and everyone involved is expected to follow the [dbt Code of Conduct](https://community.getdbt.com/code-of-conduct).