semvec/pypi-packages huggingface dataset:
cellflow-tools 0.0.6
Modeling complex perturbations with flow matching at single-cell resolution
Requires Python: >=3.10

<img src="docs/_static/images/cellflow_dark.png" width="500" alt="CellFlow">

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CellFlow - Modeling Complex Perturbations with Flow Matching 
============================================================

CellFlow is a framework for predicting single-cell phenotypes induced by complex perturbations. It is quite flexible and enables researchers to systematically explore how cells respond to a wide range of experimental interventions, including drug treatments, genetic modifications, cytokine stimulation, morphogen pathway modulation or even entire organoid protocols.

Check out the [preprint](https://www.biorxiv.org/content/10.1101/2025.04.11.648220v1.abstract) for details!

## Example Applications

- Modeling the effect of single and combinatorial drug treatments
- Predicting the phenotypic response to genetic perturbations
- Modeling the development of perturbed organisms
- Cell fate engineering
- Optimizing protocols for growing organoids
- ... and more; check out the [documentation](https://cellflow.readthedocs.io) for more information.


Installation
------------
Install **CellFlow** by running::

    pip install cellflow-tools


In order to install **CellFlow** in editable mode, run::

    git clone https://github.com/theislab/cellflow
    cd cellflow
    pip install -e .

For further instructions how to install jax, please refer to https://github.com/google/jax.
flask-simple-deploy 0.0.1
Deployment, for Flask developers with deadlines.
Requires Python: >=3.9
Keywords: flask, deployment

flask-simple-deploy
===

A trimmed-down prototype of [django-simple-deploy](https://github.com/django-simple-deploy/django-simple-deploy/). This is a brief experiment to see if a similar approach to building a plugin-based deployment tool might work in Flask.