semvec/pypi-packages huggingface dataset:
itaxotools-taxi2 2.2.2
Calculation and analysis of pairwise sequence distances
Requires Python: <4,>=3.10.2

# TaxI2

[![PyPI - Version](https://img.shields.io/pypi/v/itaxotools-taxi2?color=tomato)](
    https://pypi.org/project/itaxotools-taxi2)
[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/itaxotools-taxi2)](
    https://pypi.org/project/itaxotools-taxi2)
[![GitHub - Tests](https://img.shields.io/github/actions/workflow/status/iTaxoTools/TaxI2/test.yml?label=tests)](
    https://github.com/iTaxoTools/TaxI2/actions/workflows/test.yml)

Calculate genetic differences between DNA sequences,

This is a computational backend. For the GUI application, please visit
[TaxIGui](https://github.com/iTaxoTools/TaxIGui).


## Installation

TaxI2 is available on PyPI. You can install it through `pip`:

```
pip install itaxotools-taxi2
```

## Executables

Download and run the standalone executables without installing Python from [the latest TaxIGui release page](
    https://github.com/iTaxoTools/TaxIGui/releases/latest).

For users seeking the legacy application (v2.0.0), you may find it [here](
    https://github.com/iTaxoTools/TaxI2/releases/tag/v2.0.0).

[![Release](https://img.shields.io/badge/release-taxi_2.2.1-tomato?style=for-the-badge)](
    https://github.com/iTaxoTools/TaxIGui/releases/v0.2.4)
[![Windows](https://img.shields.io/badge/Windows-blue.svg?style=for-the-badge&logo=data:image/svg+xml;base64,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)](
    https://github.com/iTaxoTools/TaxIGui/releases/download/v0.2.4/TaxI2.2.1-windows-x64.exe)
[![MacOS](https://img.shields.io/badge/macOS-slategray.svg?style=for-the-badge&logo=apple)](
    https://github.com/iTaxoTools/TaxIGui/releases/download/v0.2.4/TaxI2.2.1-macos-universal2.dmg)

## Python API
A new API is exposed with the latest backend. See [scripts](scripts) and [tests](tests) for some examples.
itaxotools-common 0.3.5
Common resources for iTaxoTools
Requires Python: <4,>=3.10.2

# iTaxoTools common resources

[![PyPI - Version](https://img.shields.io/pypi/v/itaxotools-common)](
    https://pypi.org/project/itaxotools-common)
[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/itaxotools-common)](
    https://pypi.org/project/itaxotools-common)
[![PyPI - License](https://img.shields.io/pypi/l/itaxotools-common)](
    https://pypi.org/project/itaxotools-common)
[![GitHub - Tests](https://img.shields.io/github/actions/workflow/status/iTaxoTools/itt-common/test.yml?label=tests)](
    https://github.com/iTaxoTools/itt-common/actions/workflows/test.yml)

This package contains common modules and resources for use by other iTaxoTools projects:

- Logos and icon resources, including import machinery
- Custom binding interface for PySide6 properties
- Multi-processing utilities for PySide6
- PyInstaller hook directory definition
gpg-keyring 0.1.1
Simple keyring backend using the file system and GPG to store credentials

GPG Keyring
===========

Simple keyring implementation using `gpg` to store encrypted credentials on the file system.

# Setup

1. Install this package (f.e. into a virtual environment)
2. Create the file as specified by `keyring diagnose`. The output should look similar to this:

        config path: <HOME-FOLDER>/.config/python_keyring/keyringrc.cfg
        data root: <HOME-FOLDER>/.local/share/python_keyring

3. Use this snippet to configure this keyring backend as default:

        [backend]
        default-keyring=gpg_keyring.GpgKeyring

4. Configure your e-mail address in the file `~/.gpg_keyring/gpg_keyring.conf`:


        [settings]
        email = john.doe@domain.com

Now you should be able to use the `gpg_keyring` backend using commands like this:

- `keyring set <service> <username>` to set a password
- `keyring get <service> <username>` to retrieve the password
- `keyring del <service> <username>` to delete an entry

# Internals

Credentials and local settings are all stored in your home directory in the directory  `~/.gpg_keyring/`:

- `gpg_keyring.conf`: configuration file for this plugin
- `<SHA256-hash>`: credentials for the service. The service name is turned into a SAH-256 hash and used to as the name of the file containing the credentials.

The content of the credentials files is a base64 encoded cipher text of the following json structure:

        {
            "username": "<username>",
            "password": "<password>"
        }

... the user name `<username>` and the password `<password>` previously set via `keyring set <service> <username>` with the password `<password>` provided via `stdin`.