semvec/pypi-packages huggingface dataset:
polyase 1.3.0
A package for analyzing allele-specific expression in polyploid organisms
License: MIT
Requires Python: <3.13,>=3.11
Keywords: bioinformatics, polyploid, allele-specific, expression

<img style="width: 50%;" alt="polyASE_logo" src="https://github.com/user-attachments/assets/4d3dea85-c1a6-4707-a498-0e969a5e6c07" />

# PolyASE

A Python package for analyzing allele-specific expression in polyploid organisms.
This package is part of the [LongPolyASE](https://polyase.readthedocs.io/en/latest/index.html) framework for long-read RNA-seq allele-specific expression analysis in polyploid organisms.
Please see [syntelogfinder](https://github.com/NIB-SI/syntelogfinder) and [longrnaseq](https://github.com/NIB-SI/longrnaseq) for generating the input data for polyase.

<img style="width: 30%;" alt="polyase_analysis" src="https://github.com/user-attachments/assets/a334a3a9-ac6f-403e-8d3e-a2f4b4bbbb6d" />

## Installation

PolyASE is avialble on [PyPI](https://pypi.org/project/polyase/).
You can install polyase using pip:

<pre><code>pip install polyase</code></pre>

Pyranges must be installed manually for reading GTF files.

To create a conda environemnt for running juypter notebook:

<pre><code>conda create -n polyase python=3.12 ipykernel pip && conda activate polyase && pip install polyase && pip install pyranges</code></pre>


## Tutorial

A tutorial for analysis of allele-sepecific gene and isoform expression in tetraploid potato can be found [here](https://polyase.readthedocs.io/en/latest/tutorial_potato.html)

The input data for the tutorial can be found [here](https://zenodo.org/records/17590760/files/polyase_tutorial_atlantic.zip?download=1&preview=1)


## Citation
pepperize.projen-awscdk-app-ts 0.0.796
This project provides a projen project type providing presets for an AWS CDK construct library project
License: MIT
Requires Python: ~=3.9

[![GitHub](https://img.shields.io/github/license/pepperize/projen-awscdk-app-ts?style=flat-square)](https://github.com/pepperize/projen-awscdk-app-ts/blob/main/LICENSE)
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[![GitHub release (latest SemVer)](https://img.shields.io/github/v/release/pepperize/projen-awscdk-app-ts?sort=semver&style=flat-square)](https://github.com/pepperize/projen-awscdk-app-ts/releases)

# Projen awscdk-app-ts

This project provides a projen project type providing presets for an AWS CDK construct library project.

## Getting started

To create a new project, run the following command and follow the instructions:

```shell
mkdir my-project
cd my-project
git init -b main
npx projen new --from @pepperize/projen-awscdk-app-ts
```

*If your git cli doesn't have a `-b` option, either update [git](https://git-scm.com/) or issue `git init && git checkout -b main`.*

## Usage

To init a new project from this module:

```shell
npx projen new --from @pepperize/projen-awscdk-app-ts@latest
```

*Note: the `latest` version will be installed. If you don't specify the `latest` version, it won't be upgraded while running `yarn install`*

## Create a new projen project type

1. Create a new project for the projen external jsii npm module

   ```shell
   mkdir my-project
   cd my-project
   git init -b main
   npx projen new jsii
   ```
2. Your `src/index.ts` should export only one project.