semvec/pypi-packages huggingface dataset:
rnftools 0.4.0.0
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
License: MIT
Keywords: Bioinformatics, Computational Biology, Next-Generation Sequencing, Read Simulation, Mappers Evaluation

RNFtools
========

.. image:: https://github.com/karel-brinda/rnftools/actions/workflows/ci.yml/badge.svg?branch=master
	:target: https://github.com/karel-brinda/rnftools/actions/workflows/ci.yml

.. image:: https://readthedocs.org/projects/rnftools/badge/?version=latest
	:target: http://rnftools.rtfd.org

.. image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square
	:target: https://anaconda.org/bioconda/rnftools

.. image:: https://badge.fury.io/py/RNFtools.svg
	:target: https://badge.fury.io/py/RNFtools

.. image:: https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbtv524-brightgreen.svg
	:target: http://dx.doi.org/10.1093/bioinformatics/btv524

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1066626.svg
	:target: https://doi.org/10.5281/zenodo.1066626

**Read Naming Format** is a generic format for assigning
read names with encoded information about original positions.
**RNFtools** is an associated
software package which can:

* simulate RNF-compliant reads using a wide class of integrated read simulators (Art, DwgSim, Mason, WgSim, etc.), either from a single genome (i.e., a whole genome sequencing) or multiple genomes (i.e., a metagenomic simulation);
* evaluate mappers using RNF reads;
* convert non-RNF simulated reads to RNF (e.g., from SAM format);
* transform genomic coordinates of RNF reads between different coordinate systems (using chain LiftOver format).

Links
-----

**Web of the project:** http://karel-brinda.github.io/rnftools/

**RNF specification:** http://karel-brinda.github.io/rnf-spec/

**Documentation:** http://rnftools.rtfd.org

**Installation:** http://rnftools.readthedocs.org/en/latest/tutorial/00_installation.html

**Examples of usage:** http://github.com/karel-brinda/rnftools/tree/master/examples/01_tutorial

**Publication:** http://dx.doi.org/10.1093/bioinformatics/btv524
SciFiReaders 0.12.4
Tools for extracting data and metadata from scientific data files
License: MIT
Requires Python: >=3.9
Keywords: imaging, spectra, multidimensional, scientific

SciFiReaders
============

.. image:: https://github.com/pycroscopy/SciFiReaders/workflows/build/badge.svg?branch=main
    :target: https://github.com/pycroscopy/SciFiReaders/actions?query=workflow%3Abuild
    :alt: GitHub Actions

.. image:: https://img.shields.io/pypi/v/SciFiReaders.svg
    :target: https://pypi.org/project/SciFiReaders/
    :alt: PyPI
    
.. image:: https://img.shields.io/conda/vn/conda-forge/SciFiReaders.svg
    :target: https://github.com/conda-forge/SciFiReaders-feedstock
    :alt: conda-forge

.. image:: https://img.shields.io/pypi/l/SciFiReaders.svg
    :target: https://pypi.org/project/SciFiReaders/
    :alt: License

.. image:: http://pepy.tech/badge/SciFiReaders
    :target: http://pepy.tech/project/SciFiReaders
    :alt: Downloads
    
.. image:: https://codecov.io/gh/pycroscopy/SciFiReaders/branch/main/graph/badge.svg?token=5511SG1YWE
    :target: https://codecov.io/gh/pycroscopy/SciFiReaders
    :alt: Coverage

Tools for extracting data and metadata from scientific data files.
Extracted information are returned as a dictionary of `sidpy.Dataset <https://pycroscopy.github.io/sidpy/_autosummary/sidpy.sid.dataset.Dataset.html#sidpy.sid.dataset.Dataset>`_ objects.

Please see `SciFiReaders documentation website <https://pycroscopy.github.io/SciFiReaders/index.html>`_ for more information.