semvec/pypi-packages huggingface dataset:
geneblocks 1.2.5
Library to compare DNA sequences (diff, common blocks, etc.)
Keywords: DNA, sequence, blocks, diff, synthetic biology, bioinformatics

GeneBlocks
==========

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    :target: https://github.com/Edinburgh-Genome-Foundry/Geneblocks/actions/workflows/build.yml
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  :target: https://coveralls.io/github/Edinburgh-Genome-Foundry/Geneblocks

GeneBlocks is a Python library for comparing DNA sequences. It can be used to:

- Find common blocks in a group of DNA sequences, to factorize them (e.g. only analyze or synthetize each common block once).
- Highlight differences between sequences (insertions, deletions, mutations).
- Transfer Genbank features from one record to another sharing similar subsequences.

At the Edinburgh Genome Foundry, we use GeneBlocks to optimize sequence assembly, explore sets of non-annotated sequences, or visualize the differences
between different versions of a sequence, and re-annotate records coming from third parties such as DNA manufacturers.


Infos
-----

**PIP installation:**

.. code:: bash

  pip install geneblocks

**Github Page:** `<https://github.com/Edinburgh-Genome-Foundry/geneblocks>`_

**Live demos:**


`Find common sequence blocks <https://cuba.genomefoundry.org/find-common-blocks>`_

`Plot sequence diffs <https://cuba.genomefoundry.org/compare-two-sequences>`_

`Transfer Genbank features between records <https://cuba.genomefoundry.org/transfer-features>`_

**License:** MIT

Copyright 2017 Edinburgh Genome Foundry, University of Edinburgh


More biology software
---------------------

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
  :target: https://edinburgh-genome-foundry.github.io/

GeneBlocks is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.