semvec/pypi-packages huggingface dataset:
tibanna 6.0.0
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
License: MIT
Requires Python: <3.13,>=3.8
Keywords: tibanna

# Tibanna

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***

Tibanna runs portable pipelines (in CWL/WDL/Snakemake/shell) on the AWS Cloud.

<br>

Install Tibanna.
```bash
pip install tibanna
```

<br>

Use CLI to set up the cloud component and run workflow.
```bash
# Deploy Unicorn to the Cloud (Unicorn = serverless scheduler/resource allocator).
tibanna deploy_unicorn --usergroup=mygroup

# Run CWL/WDL workflow on the Cloud.
tibanna run_workflow --input-json=myrun.json
```

<br>

Alternatively, use Python API.

```python
from tibanna.core import API

# Deploy Unicorn to the Cloud.
API().deploy_unicorn(usergroup='mygroup')

# Run CWL/WDL workflow on the Cloud.
API().run_workflow(input_json='myrun.json')
```

<br>

---
Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.

Note 2: As of Tibanna version `2.0.0`, Python 3.7 (and lower) is no longer supported. Please switch to Python 3.11! Python 3.8 is also supported as a fallback, but please prefer 3.11 if you can.

Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo. 
* Please switch from `invoke <command>` to `tibanna <command>`! 
* We also renovated the Python API as an inheritable class to allow development around tibanna.


For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest).
* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379).
* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3).