parquet-converter
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Update parquet files
Browse files- .gitattributes +0 -51
- README.md +0 -34
- dataset_infos.json +0 -1
- data/train-00000-of-00001-e9b227f8c7259c8b.parquet → sagawa--pubchem-10m-canonicalized/parquet-train.parquet +2 -2
- data/validation-00000-of-00001-9368b7243ba1bff8.parquet → sagawa--pubchem-10m-canonicalized/parquet-validation.parquet +2 -2
.gitattributes
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# Audio files - uncompressed
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README.md
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---
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annotations_creators: []
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language: []
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language_creators:
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- expert-generated
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license:
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- apache-2.0
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multilinguality:
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- monolingual
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pretty_name: canonicalized PubChem-10m
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size_categories:
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- 100K<n<1M
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source_datasets:
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- original
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tags:
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- PubChem
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- chemical
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- SMILES
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task_categories: []
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task_ids: []
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---
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### dataset description
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We downloaded PubChem-10m dataset from [here](https://deepchemdata.s3-us-west-1.amazonaws.com/datasets/pubchem_10m.txt.zip) and canonicalized it.
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We used the following function to canonicalize the data and removed some SMILES that cannot be read by RDKit.
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```python:
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from rdkit import Chem
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def canonicalize(mol):
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mol = Chem.MolToSmiles(Chem.MolFromSmiles(mol),True)
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return mol
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```
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We randomly split the preprocessed data into train and validation. The ratio is 9 : 1.
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dataset_infos.json
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{"sagawa--pubchem-10m-canonicalized": {"description": "", "citation": "", "homepage": "", "license": "", "features": {"smiles": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": "csv", "config_name": "default", "version": {"version_str": "0.0.0", "description": null, "major": 0, "minor": 0, "patch": 0}, "splits": {"train": {"name": "train", "num_bytes": 437156944, "num_examples": 8999964, "dataset_name": "pubchem-10m-canonicalized"}, "validation": {"name": "validation", "num_bytes": 48564730, "num_examples": 999996, "dataset_name": "pubchem-10m-canonicalized"}}, "download_checksums": null, "download_size": 262948315, "post_processing_size": null, "dataset_size": 485721674, "size_in_bytes": 748669989}}
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data/train-00000-of-00001-e9b227f8c7259c8b.parquet → sagawa--pubchem-10m-canonicalized/parquet-train.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:f0a87584f54f0a7f37b86b3a3cf7ea4de4dc26727fe616f82cc384cd1d04d81e
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size 237857831
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data/validation-00000-of-00001-9368b7243ba1bff8.parquet → sagawa--pubchem-10m-canonicalized/parquet-validation.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:b27cb987d619fc72b4d2eb267980ce72f618c867e365a17168dba9a223a8de01
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size 26415790
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