parquet-converter commited on
Commit
a4f4730
1 Parent(s): f832196

Update parquet files

Browse files
.gitattributes DELETED
@@ -1,51 +0,0 @@
1
- *.7z filter=lfs diff=lfs merge=lfs -text
2
- *.arrow filter=lfs diff=lfs merge=lfs -text
3
- *.bin filter=lfs diff=lfs merge=lfs -text
4
- *.bz2 filter=lfs diff=lfs merge=lfs -text
5
- *.ftz filter=lfs diff=lfs merge=lfs -text
6
- *.gz filter=lfs diff=lfs merge=lfs -text
7
- *.h5 filter=lfs diff=lfs merge=lfs -text
8
- *.joblib filter=lfs diff=lfs merge=lfs -text
9
- *.lfs.* filter=lfs diff=lfs merge=lfs -text
10
- *.lz4 filter=lfs diff=lfs merge=lfs -text
11
- *.model filter=lfs diff=lfs merge=lfs -text
12
- *.msgpack filter=lfs diff=lfs merge=lfs -text
13
- *.npy filter=lfs diff=lfs merge=lfs -text
14
- *.npz filter=lfs diff=lfs merge=lfs -text
15
- *.onnx filter=lfs diff=lfs merge=lfs -text
16
- *.ot filter=lfs diff=lfs merge=lfs -text
17
- *.parquet filter=lfs diff=lfs merge=lfs -text
18
- *.pb filter=lfs diff=lfs merge=lfs -text
19
- *.pickle filter=lfs diff=lfs merge=lfs -text
20
- *.pkl filter=lfs diff=lfs merge=lfs -text
21
- *.pt filter=lfs diff=lfs merge=lfs -text
22
- *.pth filter=lfs diff=lfs merge=lfs -text
23
- *.rar filter=lfs diff=lfs merge=lfs -text
24
- saved_model/**/* filter=lfs diff=lfs merge=lfs -text
25
- *.tar.* filter=lfs diff=lfs merge=lfs -text
26
- *.tflite filter=lfs diff=lfs merge=lfs -text
27
- *.tgz filter=lfs diff=lfs merge=lfs -text
28
- *.wasm filter=lfs diff=lfs merge=lfs -text
29
- *.xz filter=lfs diff=lfs merge=lfs -text
30
- *.zip filter=lfs diff=lfs merge=lfs -text
31
- *.zst filter=lfs diff=lfs merge=lfs -text
32
- *tfevents* filter=lfs diff=lfs merge=lfs -text
33
- # Audio files - uncompressed
34
- *.pcm filter=lfs diff=lfs merge=lfs -text
35
- *.sam filter=lfs diff=lfs merge=lfs -text
36
- *.raw filter=lfs diff=lfs merge=lfs -text
37
- # Audio files - compressed
38
- *.aac filter=lfs diff=lfs merge=lfs -text
39
- *.flac filter=lfs diff=lfs merge=lfs -text
40
- *.mp3 filter=lfs diff=lfs merge=lfs -text
41
- *.ogg filter=lfs diff=lfs merge=lfs -text
42
- *.wav filter=lfs diff=lfs merge=lfs -text
43
- # Image files - uncompressed
44
- *.bmp filter=lfs diff=lfs merge=lfs -text
45
- *.gif filter=lfs diff=lfs merge=lfs -text
46
- *.png filter=lfs diff=lfs merge=lfs -text
47
- *.tiff filter=lfs diff=lfs merge=lfs -text
48
- # Image files - compressed
49
- *.jpg filter=lfs diff=lfs merge=lfs -text
50
- *.jpeg filter=lfs diff=lfs merge=lfs -text
51
- *.webp filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
README.md DELETED
@@ -1,34 +0,0 @@
1
- ---
2
- annotations_creators: []
3
- language: []
4
- language_creators:
5
- - expert-generated
6
- license:
7
- - apache-2.0
8
- multilinguality:
9
- - monolingual
10
- pretty_name: canonicalized PubChem-10m
11
- size_categories:
12
- - 100K<n<1M
13
- source_datasets:
14
- - original
15
- tags:
16
- - PubChem
17
- - chemical
18
- - SMILES
19
- task_categories: []
20
- task_ids: []
21
- ---
22
-
23
- ### dataset description
24
- We downloaded PubChem-10m dataset from [here](https://deepchemdata.s3-us-west-1.amazonaws.com/datasets/pubchem_10m.txt.zip) and canonicalized it.
25
- We used the following function to canonicalize the data and removed some SMILES that cannot be read by RDKit.
26
-
27
- ```python:
28
- from rdkit import Chem
29
- def canonicalize(mol):
30
- mol = Chem.MolToSmiles(Chem.MolFromSmiles(mol),True)
31
- return mol
32
- ```
33
-
34
- We randomly split the preprocessed data into train and validation. The ratio is 9 : 1.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
dataset_infos.json DELETED
@@ -1 +0,0 @@
1
- {"sagawa--pubchem-10m-canonicalized": {"description": "", "citation": "", "homepage": "", "license": "", "features": {"smiles": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": "csv", "config_name": "default", "version": {"version_str": "0.0.0", "description": null, "major": 0, "minor": 0, "patch": 0}, "splits": {"train": {"name": "train", "num_bytes": 437156944, "num_examples": 8999964, "dataset_name": "pubchem-10m-canonicalized"}, "validation": {"name": "validation", "num_bytes": 48564730, "num_examples": 999996, "dataset_name": "pubchem-10m-canonicalized"}}, "download_checksums": null, "download_size": 262948315, "post_processing_size": null, "dataset_size": 485721674, "size_in_bytes": 748669989}}
 
 
data/train-00000-of-00001-e9b227f8c7259c8b.parquet → sagawa--pubchem-10m-canonicalized/parquet-train.parquet RENAMED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:574264d71e366921b7f538612dac7d392870efaeb5cf39e0945f6894b25c9214
3
- size 236668162
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f0a87584f54f0a7f37b86b3a3cf7ea4de4dc26727fe616f82cc384cd1d04d81e
3
+ size 237857831
data/validation-00000-of-00001-9368b7243ba1bff8.parquet → sagawa--pubchem-10m-canonicalized/parquet-validation.parquet RENAMED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:22bb2355bc1f5affd15c56593ad450717aabe5797d555f0b5a7c82be23837b9c
3
- size 26280153
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b27cb987d619fc72b4d2eb267980ce72f618c867e365a17168dba9a223a8de01
3
+ size 26415790