rudyvdbrink/CitationDatabase huggingface dataset:
Case Studies in Neuroscience: Sensations elicited and discrimination ability from nerve cuff stimulation in an amputee over time.
Journal of neurophysiology, 2018

The present case study details sensations elicited by electrical stimulation of peripheral nerve axons using an implanted nerve cuff electrode, in a participant with a transhumeral amputation. The participant uses an osseointegrated electromechanical interface, which enables skeletal attachment of the prosthesis and long-term, stable, bidirectional communication between the implanted electrodes and prosthetic arm. We focused on evoking somatosensory percepts, where we tracked and quantified the evolution of perceived sensations in the missing hand, which were evoked from electrical stimulation of the nerve, for over 2 yr. These sensations included small, pointlike areas of either vibration or pushing, to larger sensations over wider areas, indicating the recruitment of a few and many afferents, respectively. Furthermore, we used a two-alternative forced choice paradigm to measure the level of discrimination between trains of brief electrical stimuli, to gauge what the participant could reliably distinguish between. At best, the participant was able to distinguish a 0.5-Hz difference and on average acquired a 3.8-Hz just-noticeable difference at a more stringent psychophysical level. The current work shows the feasibility for long-term sensory feedback in prostheses, via electrical axonal stimulation, where small and relatively stable percepts were felt that may be used to deliver graded sensory feedback. This opens up opportunities for signaling feedback during movements (e.g., for precision grip), but also for conveying more complex cutaneous sensations, such as texture. NEW & NOTEWORTHY We demonstrate the long-term stability and generation of sensations from electrical peripheral nerve stimulation in an amputee, through an osseointegrated implant. We find that perceived tactilelike sensations could be generated for over 2 yr, in the missing hand. This is useful for prosthetic development and the implementation of feedback in artificial body parts.
CB
Brain research bulletin, 2020

Neuropathic pain (NP) is a challenge due to our limited understanding of the mechanisms that initiate and maintain chronic pain. The prelimbic division (PrL) of the medial prefrontal cortex (mPFC) is an important area of the emotional and cognitive components of pain and pharmacological systems can interact into the neocortex to elaborate the chronic pain. This work aimed to investigate the pharmacological cross-talk between synaptic neurotransmission, neuroanatomical approaches and NP conditions. A bidirectional neural tract tracer, the 3000-molecular-weight biodextran (BDA) was microinjected into the PrL cortex. The mechanical withdrawal threshold (MWT) was recorded by a von Frey test, and the effect of prelimbic cortex CB
DOCK8 controls survival of group 3 innate lymphoid cells in the gut through Cdc42 activation.
International immunology, 2021

Innate lymphoid cells (ILCs) are a family of developmentally related leukocytes that rapidly secrete polarized sets of cytokines to combat infection and promote tissue repair at mucosal barriers. Among them, group 3 ILCs (ILC3s) play an important role in maintenance of the gut homeostasis by producing IL-22, and their development and function critically depend on the transcription factor RORγt. Although recent evidence indicates that RORγt+ ILC3s are reduced in the gut in the absence of the Cdc42 activator DOCK8 (dedicator of cytokinesis 8), the underlying mechanism remains unclear. We found that genetic deletion of Dock8 in RORγt+-lineage cells markedly reduced ILC3s in the lamina propria of the small intestine. By analyzing BrdU incorporation, it was revealed that DOCK8 deficiency did not affect the cell proliferation. Furthermore, when lineage marker-negative (Lin-) α4β7+ CD127+ RORγt- fetal liver cells were cultured with OP9 stromal cells in the presence of stem cell factor (SCF) and IL-7 in vitro, RORγt+ ILC3s normally developed irrespective of DOCK8 expression. However, DOCK8-deficient ILC3s exhibited a severe defect in survival of ILC3s under the condition with or without IL-7. Similar defects were observed when we analyzed Dock8VAGR mice having mutations in the catalytic center of DOCK8, thereby failing to activate Cdc42. Thus, DOCK8 acts in cell-autonomous manner to control survival of ILC3s in the gut through Cdc42 activation.
Patient Perceptions in a Nonblinded Randomized Trial of Radiation Therapy Technologies: A Novel Survey Study Exploring Therapeutic Misconception.
International journal of radiation oncology, biology, physics, 2020

Therapeutic misconception is the tendency for a clinical trial participant to overlook the scientific objective of a clinical trial and instead believe that an experimental intervention is intended for personal therapeutic benefit. We sought to evaluate this tendency in the setting of a clinical trial of a new radiation therapy technology.
A novel method for quantifying periodicity and time delay in dynamic neural networks using unstable subaction potential threshold depolarizations.
Journal of neurophysiology, 2020

Techniques to identify and correlate the propagation of electrical signals (like action potentials) along neural networks are well described, using multisite recordings. In these cases, the waveform of action potentials is usually relatively stable and discriminating relevant electrical signals straightforward. However, problems can arise when attempting to identify and correlate the propagation of signals when their waveforms are unstable (e.g., fluctuations in amplitude or time course). This makes correlation of the degree of synchronization and time lag between propagating electrical events across two or more recording sites problematic. Here, we present novel techniques for the determination of the periodicity of electrical signals at individual sites. When recording from two independent sites, we present novel analytical techniques for joint determination of periodicity and time delay. The techniques presented exploit properties of the cross-correlation function, rather than utilizing the time lag at which the cross-correlation function is maximized. The approach allows determination of directionality of the spread of excitation along a neural network based on measurements of the time delay between recording sites. This new method is particularly applicable to analysis of signals in other biological systems that have unstable characteristics in waveform that show dynamic variability.
Cultures of glial cells from optic nerve of two adult teleost fish: Astatotilapia burtoni and Danio rerio.
Journal of neuroscience methods, 2021

In vitro studies are very useful to increase the knowledge of different cell types and could be the key to understand cell metabolism and function. Fish optic nerves (ON) can recover visual functions by reestablishing its structure and reconnecting the axons of ganglion cells. This is because fish show spontaneous regeneration of the central nervous system which does not occur in mammals. In addition, several studies have indicated that glial cells of ON have different properties in comparison to the glial cells from brain or retina. Consequently, providing an in vitro tool will be highly beneficial to increase the knowledge of these cells.
Wine experts' recognition of wine odors is not verbally mediated.
Journal of experimental psychology. General, 2021

Experts have better memory for items within their domain of expertise. Critically, this does not depend on more efficient use of language. However, this conclusion is based mainly on findings from experts in visual and auditory domains. Olfactory experts constitute an interesting potential counterexample since language has been implicated to be critically involved in odor memory in previous studies. We examined the role language plays in odor recognition memory for wine experts, who typically display better wine odor memory than novices and who are also able to name odors better than lay people. This suggests wine experts' superior recognition memory for odors may be verbally mediated. In 2 experiments, recognition memory for wine odors, wine-related odors, and common odors was tested in wine experts and novices. The use of language was manipulated in Experiment 1 with an overt naming versus no-naming condition, and in Experiment 2, with a verbal interference task inhibiting covert verbalization. Across the two experiments the results showed wine experts have better recognition memory for wines, but not for wine-related or common odors, indicating their memory advantage is expertise specific. Critically, this effect was not verbally mediated, as there was no relationship between experts' ability to name wines and their memory for them. Likewise, directly inhibiting online use of verbalization did not affect memory for wine odors in experts. In sum, once expertise has been acquired, language does not play a causal role in recognition memory for odors. (PsycInfo Database Record (c) 2021 APA, all rights reserved).
Human children, but not great apes, become socially closer by sharing an experience in common ground.
Journal of experimental child psychology, 2020

To create social closeness, humans engage in a variety of social activities centered around shared experiences. Even simply watching the same video side by side creates social closeness in adults and children. However, perhaps surprisingly, a similar psychological mechanism was recently shown in great apes. Here we asked whether the process by which this social closeness is created is the same for children and great apes. Each participant entered a room to see an experimenter (E1) watching a video. In one condition, E1 looked to the participant at the start of the video to establish common ground that they were watching the video together. In another condition, E1 did not look to the participant in this way so that the participant knew they were watching the same video, but the participant did not know whether E1 was aware of this as well, so there was no common ground (E1 looked to the participant later in the procedure). Children, but not great apes, approached the experimenter faster after the common ground condition, suggesting that although both humans and great apes create social closeness by co-attending to something in close proximity, creating social closeness by sharing experiences in common ground may be a uniquely human social-cognitive process.
Diphtheria toxin-mediated transposon-driven poly (A)-trapping efficiently disrupts transcriptionally silent genes in embryonic stem cells.
Genesis (New York, N.Y. : 2000), 2020

Random gene trapping is the application of insertional mutagenesis techniques that are conventionally used to inactivate protein-coding genes in mouse embryonic stem (ES) cells. Transcriptionally silent genes are not effectively targeted by conventional random gene trapping techniques, thus we herein developed an unbiased poly (A) trap (UPATrap) method using a Tol2 transposon, which preferentially integrated into active genes rather than silent genes in ES cells. To achieve efficient trapping at transcriptionally silent genes using random insertional mutagenesis in ES cells, we generated a new diphtheria toxin (DT)-mediated trapping vector, DTrap that removed cells, through the expression of DT that was induced by the promoter activity of the trapped genes, and selected trapped clones using the neomycin-resistance gene of the vector. We found that a double-DT, the dDT vector, dominantly induced the disruption of silent genes, but not active genes, and showed more stable integration in ES cells than the UPATrap vector. The dDT vector disrupted differentiated cell lineage genes, which were silent in ES cells, and labeled trapped clone cells by the expression of EGFP upon differentiation. Thus, the dDT vector provides a systematic approach to disrupt silent genes and examine the cellular functions of trapped genes in the differentiation of target cells and development.
Measuring the actual timing of liquid-reward delivery using a thermistor.
Journal of neuroscience methods, 2014

Determining the exact timing of reward delivery is critical in neurophysiological experiments. Despite the importance of this parameter, techniques for precisely measuring the exact delivery time of a liquid reward have been underdeveloped. Although there is always some latency between the computer command and reward delivery, the former has been used routinely to mark reward onset time.
Interoceptive insular cortex participates in sensory processing of gastrointestinal malaise and associated behaviors.
Scientific reports, 2020

The insular cortex plays a central role in the perception and regulation of bodily needs and emotions. Its modular arrangement, corresponding with different sensory modalities, denotes a complex organization, and reveals it to be a hub that is able to coordinate autonomic and behavioral responses to many types of stimuli. Yet, little is known about the dynamics of its electrical activity at the neuronal level. We recorded single neurons in behaving rats from the posterior insula cortex (pIC), a subdivision considered as a primary interoceptive cortex, during gastrointestinal (GI) malaise, a state akin to the emotion of disgust in humans. We found that a large proportion of pIC neurons were modulated during the rodent compensatory behaviors of lying on belly (LOB) and Pica. Furthermore, we demonstrated that LOB was correlated with low-frequency oscillations in the field potentials and spikes at the theta (8 Hz) band, and that low-frequency electrical microstimulation of pIC elicited LOB and Pica. These findings demonstrate that pIC neurons play a critical role in GI malaise perception, and that the pIC influences the expression of behaviors that alleviate GI malaise. Our model provides an accessible approach at the single cell level to study innate emotional behaviors, currently elusive in humans.
Spatiotemporal neural integration for bistable perception in a response-time structure-from-motion task.
IEEE transactions on bio-medical engineering, 2009

The question of how perception arises from neuronal activity in the visual cortex is of fundamental importance to many issues in cognitive neuroscience. To address this question, we adopt a unique experimental paradigm in which bistable stimuli, namely structure from motion (SFM), are employed to dissociate the visual input from perception while monitoring cortical neural activity. In this paper, we analyze the dynamic responses of the multiunit activity, simultaneously collected from multiple channels in the middle temporal visual cortex of awake behaving macaque monkeys, for decoding the bistable percepts of SFM in a response-time (RT) perceptual discrimination task. Our goal is to understand how the perceptual discriminative information of neuronal population activity evolves and accumulates over time to mediate behaviors. Here, we used a discriminative classifier called the logistic regression and contrasted it with two generative classifiers, namely the quadratic discriminant analysis (QDA) and linear discriminant analysis (LDA), to achieve the spatiotemporal integration of neural activity and dynamically decode the perceptual reports on a single-trial basis. We found that the logistic regression outperforms both QDA and LDA in terms of decoding accuracy for both single-channel and multichannel decoding of bistable percepts. Subsequent analysis of the temporal profile of neural population decoding in relation to RT revealed that the amplitude and latency of the decoding accuracy are highly correlated with the RT, thus indicating that the monkeys respond faster when the decoding accuracy is higher and has shorter latency. These findings suggest that enhanced neuronal discrimination ability and shortened neuronal discrimination latency may impact monkeys' behaviors.
Targeting intrusive imagery using a competing task technique: a case study.
Behavioural and cognitive psychotherapy, 2020

Even in cases with complexity, simple techniques can be useful to target a specific symptom. Intrusive mental images are highly disruptive, drive emotion, and contribute to maintaining psychopathology. Cognitive science suggests that we might target intrusive images using competing tasks.
Left posterior parietal theta burst stimulation affects gestural imitation regardless of semantic content.
Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, 2014

Neuro-imaging studies have suggested that the ability to imitate meaningless and meaningful gestures may differentially depend on superior (SPL) and inferior (IPL) parietal lobule. Therefore, we hypothesized that imaging-guided neuro-navigated continuous theta burst stimulation (cTBS) over left SPL mainly affects meaningless and over left IPL predominantly meaningful gestures.
Proline-rich transmembrane protein 2 (PRRT2) regulates the actin cytoskeleton during synaptogenesis.
Cell death & disease, 2020

Mutations in proline-rich transmembrane protein 2 (PRRT2) have been recently identified as the leading cause of a clinically heterogeneous group of neurological disorders sharing a paroxysmal nature, including paroxysmal kinesigenic dyskinesia and benign familial infantile seizures. To date, studies aimed at understanding its physiological functions in neurons have mainly focused on its ability to regulate neurotransmitter release and neuronal excitability. Here, we show that PRRT2 expression in non-neuronal cell lines inhibits cell motility and focal adhesion turnover, increases cell aggregation propensity, and promotes the protrusion of filopodia, all processes impinging on the actin cytoskeleton. In primary hippocampal neurons, PRRT2 silencing affects the synaptic content of filamentous actin and perturbs actin dynamics. This is accompanied by defects in the density and maturation of dendritic spines. We identified cofilin, an actin-binding protein abundantly expressed at the synaptic level, as the ultimate effector of PRRT2. Indeed, PRRT2 silencing unbalances cofilin activity leading to the formation of cofilin-actin rods along neurites. The expression of a cofilin phospho-mimetic mutant (cof-S3E) is able to rescue PRRT2-dependent defects in synapse density, spine number and morphology, but not the alterations observed in neurotransmitter release. Our data support a novel function of PRRT2 in the regulation of the synaptic actin cytoskeleton and in the formation of synaptic contacts.
Visual neuroscience: a binocular advantage for word processing during reading.
Current biology : CB, 2014

A recent study using a novel saccade-contingent display-change technique to control the presentation of text to each eye shows a binocular advantage for both foveal and parafoveal processing of words during natural reading.
Prebiotic and probiotic supplementation and the tryptophan-kynurenine pathway: A systematic review and meta analysis.
Neuroscience and biobehavioral reviews, 2021

This systematic review aimed to synthesise the results from studies investigating the effects of prebiotics and probiotics on kynurenine pathway metabolism. Thirteen studies were identified for inclusion, comprising 12 probiotic and two prebiotic arms. Participants included healthy individuals and individuals with various clinical conditions. Twelve metabolites were examined across the studies, using a range of biological samples. Across all interventions, 11 reported an effect on ≤ metabolite. Although limited by clinical and methodological heterogeneity, pooled analysis (n = 253) found probiotics to significantly affect serum kynurenine (g = 0.315, CI = 0.070 to 0.560, p = 0.012, 4 studies, I
Unilateral wrist extension training after stroke improves strength and neural plasticity in both arms.
Experimental brain research, 2018

Stroke induces bilateral neurological impairment and muscle weakness yielding neurologically more (MA; paretic) and less affected (LA; non-paretic) sides. "Cross-education" refers to training one side of the body to increase strength in the same muscles on the untrained side. Past work showed dorsiflexion training of the LA side produced bilateral strength increases after stroke. The current study explored the presence and extent of cross-education after arm strength training in chronic stroke. Twenty-four chronic stroke participants completed 5 weeks of maximal wrist extension training using their LA arm. Maximal voluntary contraction force, arm motor impairment and functional performance were measured before and after training. Both spinal cord plasticity (n = 12: reciprocal inhibition and cutaneous reflexes, University of Victoria) and cortical plasticity (n = 12: cortical silent period, short-interval intracortical inhibition, intracortical facilitation and transcallosal inhibition, University of British Columbia) were assessed. Five weeks after training, 20 participants completed a follow-up maximal wrist extension retention test. LA wrist extension force increased 42% and MA by 35%. Strength gains were maintained in the follow-up test. Clinically meaningful increases in Fugl-Meyer scores were noted in four participants. Muscle activation was correlated with cutaneous reflex amplitudes after training in the MA arm. LA cortical silent period and transcallosal inhibition from both hemispheres significantly decreased after training. This study shows that high-intensity training with the neurologically less affected "non-paretic" arm can improve strength bilaterally and alter both spinal and cortical plasticity. The extent to which this plasticity can be enhanced or functionally exploited remains to be examined.
Choosing Wisely Neurology: Recommendations for the Canadian Neurological Society.
The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques, 2021

Choosing Wisely Canada (CWC) is a national branch of a global campaign advocating for fewer unnecessary tests and for optimizing patient care. Professional societies representing physicians, pharmacists, and nurses participate by generating lists of recommendations meant to reduce patient harm and resource mismanagement in healthcare. The Canadian Neurological Society (CNS) plays an important role in advocating for quality patient care demonstrated by deriving specific recommendations. This process is described.
Appearance of a double bubble in achalasia cardia: a case report.
Journal of medical case reports, 2008

Achalasia cardia is characterized by failure of the lower esophageal sphincter to relax in response to swallowing and by an absence of peristalsis in the esophageal body. Absence of a gastric air bubble is a well known radiological finding. Pneumatic balloon dilatation results in reappearance of the gastric bubble.