rudyvdbrink/CitationDatabase huggingface dataset:
Surgical management of a thoracic extradural arachnoid cyst with communication to subarachnoid space through nerve root: a case report.
British journal of neurosurgery, 2021

Spinal extradural cysts are uncommon and may cause cord and nerve root compression. The cysts usually appear in thoracic spine. We report a 29-year-old man with an extradural arachnoid cyst from T4 to T6. The cyst was communicated to the subarachnoid space through a fistula at the left T6 nerve root. To access the fistula, we had to unroof the foramen of left T6 nerve root which could lead to spinal instability. We decided to save the bony and soft tissue elements of the foramen at the mentioned thoracic spine level. Therefore, the cyst walls were excised and then the ostia of the cyst at the cystic side of the fistula was tightly closed.
Modelling and mathematical analysis of the M$_{2}$ receptor-dependent joint signalling and secondary messenger network in CHO cells.
Mathematical medicine and biology : a journal of the IMA, 2018

The muscarinic M$_{2}$ receptor is a prominent member of the GPCR family and strongly involved in heart diseases. Recently published experimental work explored the cellular response to iperoxo-induced M$_{2}$ receptor stimulation in Chinese hamster ovary (CHO) cells. To better understand these responses, we modelled and analysed the muscarinic M$_{2}$ receptor-dependent signalling pathway combined with relevant secondary messenger molecules using mass action. In our literature-based joint signalling and secondary messenger model, all binding and phosphorylation events are explicitly taken into account in order to enable subsequent stoichiometric matrix analysis. We propose constraint flux sampling (CFS) as a method to characterize the expected shift of the steady state reaction flux distribution due to the known amount of cAMP production and PDE4 activation. CFS correctly predicts an experimentally observable influence on the cytoskeleton structure (marked by actin and tubulin) and in consequence a change of the optical density of cells. In a second step, we use CFS to simulate the effect of knock-out experiments within our biological system, and thus to rank the influence of individual molecules on the observed change of the optical cell density. In particular, we confirm the relevance of the protein RGS14, which is supported by current literature. A combination of CFS with Elementary Flux Mode analysis enabled us to determine the possible underlying mechanism. Our analysis suggests that mathematical tools developed for metabolic network analysis can also be applied to mixed secondary messenger and signalling models. This could be very helpful to perform model checking with little effort and to generate hypotheses for further research if parameters are not known.
Effectiveness of Adding Antiplatelets to Oral Anticoagulants in Patients with Acute Ischemic Stroke with Atrial Fibrillation and Concomitant Large Artery Steno-Occlusion.
Translational stroke research, 2020

We investigated the effectiveness of adding antiplatelet (AP) to oral anticoagulant (OAC) treatment versus OAC treatment alone in patients with AIS with atrial fibrillation (AF) and significant large artery steno-occlusion (LASO). This study is a retrospective analysis of a nationwide, prospective, multicenter stroke registry between April 2008 and November 2017. Patients with acute (within 48 h of onset) and mild-to-moderate (NIHSS score ≤ 15) stroke with AF and concomitant LASO were identified. Antithrombotic regimens at discharge were categorized into OAC alone or OAC + AP. The primary outcome event was a composite of recurrent stroke, myocardial infarction, and all-cause mortality within 3 months of stroke. Among the 2553 patients (age, 73 ± 10 years; men, 50.4%), 78.8% were treated with OAC alone, and 21.2% were treated with OAC + AP. The primary outcome events were significantly more common in the OAC + AP group (6.7%) than the OAC alone group (4.3%) (p = 0.02). Weighted Cox proportional hazard analysis showed that OAC + AP increased the risk of 3-month primary outcome events compared with OAC alone (HR, 1.62 [1.06 to 2.46]). A potential interaction between the type of LASO and discharge antithrombotics was suggested (P
"The developmental and functional logic of neuronal circuits": commentary on the Kavli Prize in Neuroscience.
Neuroscience, 2009

The first Kavli Prize in Neuroscience recognizes a confluence of career achievements that together provide a fundamental understanding of how brain and spinal cord circuits are assembled during development and function in the adult. The members of the Kavli Neuroscience Prize Committee have decided to reward three scientists (Sten Grillner, Thomas Jessell, and Pasko Rakic) jointly "for discoveries on the developmental and functional logic of neuronal circuits". Pasko Rakic performed groundbreaking studies of the developing cerebral cortex, including the discovery of how radial glia guide the neuronal migration that establishes cortical layers and for the radial unit hypothesis and its implications for cortical connectivity and evolution. Thomas Jessell discovered molecular principles governing the specification and patterning of different neuron types and the development of their synaptic interconnection into sensorimotor circuits. Sten Grillner elucidated principles of network organization in the vertebrate locomotor central pattern generator, along with its command systems and sensory and higher order control. The discoveries of Rakic, Jessell and Grillner provide a framework for how neurons obtain their identities and ultimate locations, establish appropriate connections with each other, and how the resultant neuronal networks operate. Their work has significantly advanced our understanding of brain development and function and created new opportunities for the treatment of neurological disorders. Each has pioneered an important area of neuroscience research and left a legacy of exceptional scientific achievement, insight, communication, mentoring and leadership.
A glance into psychiatric comorbidity in adolescents with anorexia nervosa.
Minerva pediatrica, 2020

Eating disorders display several psychiatric comorbidities. The aim of this study was to describe these comorbidities in a group of adolescent patients with anorexia nervosa or OSFED (Other Specified Feedind or Eating Disorder). We have evaluated the comorbidity both with a clinical interview (categorical comorbidities) and with a self-report interview (dimensional comorbidities) in order to compare the two profiles.
Left-frontal brain potentials index conceptual implicit memory for words initially viewed subliminally.
Brain research, 2009

Neural correlates of explicit and implicit memory tend to co-occur and are therefore difficult to measure independently, posing problems for understanding the unique nature of different types of memory processing. To circumvent this problem, we developed an experimental design wherein subjects acquired information from words presented in a subliminal manner, such that conscious remembering was minimized. Cross-modal word repetition was used so that perceptual implicit memory would also be limited. Healthy human subjects viewed subliminal words six times each and about 2 min later heard the same words interspersed with new words in a category-verification test. Electrophysiological correlates of word repetition included negative brain potentials over left-frontal locations beginning approximately 500 ms after word onset. Behavioral responses were slower for repeated words than for new words. Differential processing of word meaning in the absence of explicit memory was most likely responsible for differential electrical and behavioral responses to old versus new words. Moreover, these effects were distinct from neural correlates of explicit memory observed in prior experiments, and were observed here in two separate experiments, thus providing a foundation for further investigations of relationships and interactions between different types of memory engaged when words repeat.
Integrated sequencing and array comparative genomic hybridization in familial Parkinson disease.
Neurology. Genetics, 2020

To determine how single nucleotide variants (SNVs) and copy number variants (CNVs) contribute to molecular diagnosis in familial Parkinson disease (PD), we integrated exome sequencing (ES) and genome-wide array-based comparative genomic hybridization (aCGH) and further probed CNV structure to reveal mutational mechanisms.
Social comparison on social networking sites.
Current opinion in psychology, 2020

Because of the rise of social networking sites (SNSs), social comparisons take place at an unprecedented rate and scale. There is a growing concern that these online social comparisons negatively impact people's subjective well-being (SWB). In this paper, we review research on (a) the antecedents of social comparisons on SNSs, (b) the consequences of social comparisons on SNSs for SWB and, (c) social comparison as a mechanism explaining (mediator) or affecting (moderator) the relationship between SNSs and SWB. The occurrence of social comparisons on SNSs depends on who uses the SNS and on how the SNS is being used with passive use in particular resulting in increased levels of social comparison. Moreover, social comparison on SNSs may occasionally result in an increase in SWB but typically negative effects are found as people tend to engage in contrasting upward social comparisons. Finally, several studies show that social comparison is a key mechanism explaining the relationship between use of SNSs and SWB and that users with a tendency to engage in social comparison are especially likely to be negatively impacted by SNSs. The dynamic, cyclical processes that result from this pattern of findings are discussed.
The consequences of stimulus intensity on sensory nerve action potentials.
Journal of neuroscience methods, 2009

Although clinical references recommend evoking sensory nerve action potentials (SNAPs) using supramaximal stimulation, many patients and research subjects report that the maximal and supramaximal stimulation is uncomfortable. The purpose of this study was to determine whether using stimulation intensities at maximal and submaximal levels results in differences in SNAP latency or amplitude outcomes relative to SNAPs recorded using supramaximal stimulation. Twenty healthy male and female subjects participated. Antidromic SNAPs were evoked at two separate sites along the course of the median nerve: (1) just proximal to the wrist and (2) just proximal to the antecubital fossa in each subject. All evoked potentials were recorded from the second digit. The stimulation current that resulted in a maximal amplitude SNAP was determined and 10 SNAPs were ensemble averaged using this stimulation level. Ten SNAPs were then evoked at each of four other stimulation intensities (20% and 10% both above and below that which generated a maximal amplitude SNAP) and were ensemble averaged. For each stimulation intensity and stimulation site, SNAP amplitude and latency determined for each ensemble average. SNAP amplitudes and latencies were compared among stimulus levels and between sexes using a repeated measures analyses of variance. The results of this study suggest that stimulus intensities used to generate SNAPs at the median nerve do not need to be supramaximal in order to generate valid and reliable SNAP data, with stimulation intensities as low as 20% below maximal proving to be sufficient, particularly for the measurement of SNAP latency.
Neurologic Melioidosis: Case Report of a Rare Cause of Acute Flaccid Paralysis.
The Journal of pediatrics, 2016

Acute flaccid paralysis is associated with inflammation, infection, or tumors in the spinal cord or peripheral nerves. Melioidosis (Burkholderia pseudomallei infection) can rarely cause this presentation. We describe a case of spinal melioidosis in a 4-year-old boy presenting with flaccid paralysis, and review the literature on this rare disease.
Loss of philological purity: Hybrid vigor or mongrelism?
Clinical anatomy (New York, N.Y.), 2018

Although disparaged by philologists, hybrid words enrich technical and scientific vocabularies. They are common, so, like it or not, they are here to stay. On the other hand, where there are pre-existing purebred compound or affixed words, they should generally be given preference over hybrids. Some adjectives (e.g., laryngeus and sphenoideus) are discussed to illustrate these recommendations. Clin. Anat. 31:771-773, 2018. © 2018 Wiley Periodicals, Inc.
Prototypical pacemaker neurons interact with the resident microbiota.
Proceedings of the National Academy of Sciences of the United States of America, 2020

Pacemaker neurons exert control over neuronal circuit function by their intrinsic ability to generate rhythmic bursts of action potential. Recent work has identified rhythmic gut contractions in human, mice, and hydra to be dependent on both neurons and the resident microbiota. However, little is known about the evolutionary origin of these neurons and their interaction with microbes. In this study, we identified and functionally characterized prototypical ANO/SCN/TRPM ion channel-expressing pacemaker cells in the basal metazoan
Right fronto-parietal white matter disruption contributes to speech impairments in amyotrophic lateral sclerosis.
Brain research bulletin, 2020

Non-linguistic properties of speech are widely heterogeneous and require complex neurological integration. The association between white matter integrity and the severity of dysarthria was investigated in a group of patients diagnosed with amyotrophic lateral sclerosis (ALS).
Much of the variation in breast pathology quality assurance data in the UK can be explained by the random order in which cases arrive at individual centres, but some true outliers do exist.
Histopathology, 2011

To investigate the role of random temporal order of patient arrival at screening centres in the variability seen in rates of node positivity and breast cancer grade between centres in the NHS Breast Screening Programme.
Absolute and relative knowledge of ordinal position on implied lists.
Journal of experimental psychology. Learning, memory, and cognition, 2020

Does serial learning result in specific associations between pairs of items, or does it result in a cognitive map based on relations of all items? In 2 experiments, we trained human participants to learn various lists of photographic images. We then tested the participants on new lists of photographic images. These new lists were constructed by selecting only 1 image from each list learned during training. In Experiment 1, participants were trained to choose the earlier (experimenter defined) item when presented with adjacent pairs of items on each of 5 different 5-item lists. Participants were then tested on derived lists, in which each item retained its original ordinal position, even though each of the presented pairs was novel. Participants performed above chance on all of the derived lists. In Experiment 2, a different group of participants received the same training as those of Experiment 1, but the ordinal positions of items were systematically changed on each derived list. The response accuracy for Experiment 2 varied inversely with the degree to which an item's original ordinal position was changed. These results can be explained by a model in which participants learned to make both positional inferences about the absolute rank of each stimulus, and transitive inferences about the relative ranks of pairs of stimuli. These inferences enhanced response accuracy when ordinal position was maintained, but not when it was changed. Our results demonstrate quantitatively that, in addition to item-item associations that participants acquire while learning a list of arbitrary items, they form a cognitive map that represents both experienced and inferred relationships. (PsycInfo Database Record (c) 2021 APA, all rights reserved).
Synaptic Loss in Multiple Sclerosis Spinal Cord.
Annals of neurology, 2020

Disability in multiple sclerosis (MS) is considered primarily a result of axonal loss. However, correlation with spinal cord cross-sectional area-a predictor of disability-is poor, questioning the unique role of axonal loss. We investigated the degree of synaptic loss in postmortem spinal cords (18 chronic MS, 8 healthy controls) using immunohistochemistry for synaptophysin and synapsin. Substantial (58-96%) loss of synapses throughout the spinal cord was detected, along with moderate (47%) loss of anterior horn neurons, notably in demyelinating MS lesions. We conclude that synaptic loss is significant in chronic MS, likely contributing to disability accrual. ANN NEUROL 2020;88:619-625.
Neuroscience needs behavior: inferring psychophysical strategy trial by trial.
Neuron, 2021

Tools quantifying dynamic behavior are important to understand brain function. In this issue of Neuron, Roy et al. (2021) extended the available repertoire with PsyTrack, which tracks, trial by trial, how subjects performing psychophysical tasks adjust the way they weigh stimuli and task covariates or change their biases.
A dedicated eight-channel receive RF coil array for monkey brain MRI at 9.4 T.
NMR in biomedicine, 2020

The neuroimaging of nonhuman primates (NHPs) realised with magnetic resonance imaging (MRI) plays an important role in understanding brain structures and functions, as well as neurodegenerative diseases and pathological disorders. Theoretically, an ultrahigh field MRI (≥7 T) is capable of providing a higher signal-to-noise ratio (SNR) for better resolution; however, the lack of appropriate radiofrequency (RF) coils for 9.4 T monkey MRI undermines the benefits provided by a higher field strength. In particular, the standard volume birdcage coil at 9.4 T generates typical destructive interferences in the periphery of the brain, which reduces the SNR in the neuroscience-focused cortex region. Also, the standard birdcage coil is not capable of performing parallel imaging. Consequently, extended scan durations may cause unnecessary damage due to overlong anaesthesia. In this work, assisted by numerical simulations, an eight-channel receive RF coil array was specially designed and manufactured for imaging NHPs at 9.4 T. The structure and geometry of the proposed receive array was optimised with numerical simulations, so that the SNR enhancement region was particularly focused on monkey brain. Validated with rhesus monkey and cynomolgus monkey brain images acquired from a 9.4 T MRI scanner, the proposed receive array outperformed standard birdcage coil with higher SNR, mean diffusivity and fractional anisotropy values, as well as providing better capability for parallel imaging.
Occlusive Disease and Upright Activity in Acute Ischemic Stroke.
Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association, 2021

The impact of out-of-bed upright activity on outcomes in ischemic stroke patients with severe extra- and intracranial stenosis or occlusion is unknown. Using ultrasound findings from a cohort recruited to A Very Early Rehabilitation Trial (AVERT) which compared higher dose very early mobilisation (VEM) to usual care (UC), we aimed to explore the association between occlusive disease and 3-month outcomes and occlusive disease-by-mobilisation treatment interactions. Participants with ischemic stroke, with carotid and transcranial Doppler ultrasounds performed ≤1 week after admission, were included in this single centre substudy in Melbourne, Australia. Reports were retrospectively reviewed to determine the degree of stenosis or presence of occlusion in the relevant arterial territory. Stenosis ≥70% extracranial or ≥50% intracranial were classified as severe or occlusion. Overall, 19% (n = 36/191) had occlusive disease in the affected circulation. About 40% (n = 14/36) with occlusive disease and 51% (n = 79/155) without had a 3-month favourable outcome (mRS 0-2) (adjusted OR0.53, CI0.17-1.67). Fourteen percent (n = 5) with occlusive disease and 4% (n = 6) without died by 3 months (adjusted OR2.52, CI0.6-10.7). Fifty percent (n = 11/22) of UC (adjusted OR0.86, CI0.23-3.2) and 21% (n = 3/14) of VEM participants (adjusted OR0.16, CI0.01-2.7) with occlusive disease had a favourable outcome. Almost 30% (n = 4) VEM participants with occlusive disease died (adjusted OR3.99, CI0.69-22.9) compared to 5% (n = 1) UC participants with occlusive disease (adjusted OR0.45, CI0.02-8.6), however numbers were small. No stenosis-by-treatment interactions were found. High quality prospective studies are needed to help guide decision making about when patients with occlusive disease should commence upright activity in acute stroke.
Feedback-mediated neuronal competition for survival cues regulates innervation of a target tissue.
BioEssays : news and reviews in molecular, cellular and developmental biology, 2008

Proper wiring of the nervous system requires tight control of the number of nerve terminals that innervate a target tissue. Recent work by Deppmann et al., now suggests that this is achieved by feedback-mediated neuronal competition for target-derived survival cues. The authors' model is inspired by the theory for pattern formation based on self-activation and lateral inhibition, proposed by Meinhardt and Gierer more than 30 years ago.
Patch Clamp Recording of Starburst Amacrine Cells in a Flat-mount Preparation of Deafferentated Mouse Retina.
Journal of visualized experiments : JoVE, 2016

The mammalian retina is a layered tissue composed of multiple neuronal types. To understand how visual signals are processed within its intricate synaptic network, electrophysiological recordings are frequently used to study connections among individual neurons. We have optimized a flat-mount preparation for patch clamp recording of genetically marked neurons in both GCL (ganglion cell layer) and INL (inner nuclear layer) of mouse retinas. Recording INL neurons in flat-mounts is favored over slices because both vertical and lateral connections are preserved in the former configuration, allowing retinal circuits with large lateral components to be studied. We have used this procedure to compare responses of mirror-partnered neurons in retinas such as the cholinergic starburst amacrine cells (SACs).
Intravenous infusion of mesenchymal stem cells delays disease progression in the SOD1G93A transgenic amyotrophic lateral sclerosis rat model.
Brain research, 2021

ALS is a devastating neurodegenerative disease with few curative strategies. Both sporadic and familial ALS display common clinical features that show progressive paralysis. The pathogenesis remains unclear, but disruption of the blood-spinal cord barrier (BSCB) may contribute to the degeneration of motor neurons. Thus, restoration of the disrupted BSCB and neuroprotection for degenerating motor neurons could be therapeutic targets. We tested the hypothesis that an intravenous infusion of MSCs would delay disease progression through the preservation of BSCB function and increased expression of a neurotrophic factor, neurturin, in SOD1