reapxdev/zenodo-scraper huggingface dataset:
Analytical Routines and Statistical Code for "Thermokarsts accelerate methane emissions from the Alaskan tundra, but spring hydrologic conditions determine the magnitude"
Authors: Dengel, Sigrid, Chafe, Oriana, Riggs, Jeffrey, Krassovski, Misha, Torn, Margaret
Type: Software
Published: 2026-08-03
Keywords: methane fluxes, tundra

<p>This repository contains the R analysis scripts accompanying the manuscript <strong>"Thermokarsts accelerate methane emissions from the Alaskan tundra, but spring hydrologic conditions determine the magnitude"</strong>. The code includes statistical workflows for non-parametric bootstrapping, Kolmogorov–Smirnov (K-S) environmental sampling bias evaluations, Classification and Regression Tree (CART) modeling, Linear Mixed-Effects Models, and lag analyses evaluating tundra methane flux dynamics.</p>
<p>All packages used are cited in the file</p>
pgualda/collatz-mersenne-atractores: Un Punto de Confluencia Determinista en Trayectorias de Collatz para números de Mersenne con exponentes k ≡ 30 (mód 64)
Authors: norberto daniel gualda
Type: Software
Published: 2026-08-03

<p>Demostramos que para todo $k \equiv 30 \pmod{64}$, las secuencias de Collatz generadas por los números de Mersenne adyacentes $M_k = 2^k - 1$ y $M_{k+1} = 2^{k+1} - 1$ colisionan de forma determinista, alcanzando un nodo común expresado en forma cerrada por $N(k) = \frac{3^{k+3} + 125}{128}$.</p>
老式国际音标编码的知识迁移与数字保存
Authors: Sheng, Jinbiao
Type: Software
Published: 2026-08-03

<p class="FirstParagraph">20 世纪末至 21 世纪初,中国语言学界在方言学、历史音韵学和民族语言调查中大量使用自定义国际音标字体。此类字体把普通字符、扩展字符或私用区码位重新绘制为国际音标字形,曾有效解决 Word 时代复杂音标录入和排版问题,却在 Unicode 普及后形成新的数字保存风险:文本一旦脱离原字体,就会变成难以解释的乱码。本文以三类旧式国际音标字体的转换复原为个案,讨论 IpaPanAdd / IpaPanNew、Ipajadd SILDoulos 与 IPA93cnD 三条编码路径的识别、分流、映射校验和 Unicode 转换方法。研究表明,旧国际音标字体不能因同属 SIL / IPA 传统或字形相似而合并为一张通用码表;同一码位在不同字体中可能对应完全不同的音标。可靠的迁移流程应当按字体和材料来源分别建表,结合转换宏、字体轮廓、Word 实际显示和语词上下文进行校验,并保留未覆盖字符报告。本文认为,老式国际音标工具并非单纯的“乱码来源”,而是中国语言学数字化早期阶段的重要基础设施;对其进行 Unicode 转换,既是文献抢救,也是学术工具史和数据再利用能力的整理。</p>
FTreeKG: File Tree Knowledge Graph
Authors: Suchanek, Eric G., PhD
Type: Software
Published: 2026-08-03
Keywords: knowledge-graph, file-tree, semantic-search, mcp, kgrag

FTreeKG is a KGModule that builds a semantic knowledge graph from file tree structures. It indexes directories, files, and their relationships, enabling semantic search, structural navigation, and MCP-based AI integration over file system hierarchies.
adrianstier/coral-cafi-density-experiment: v1.0.5 - Final Resubmission Snapshot
Authors: Adrian Stier
Type: Software
Published: 2026-08-03

<p>Final resubmission-ready analysis snapshot for Habitat amount reshapes coral-associated communities and host condition.\n\nThis release is minted from the clean public analysis repository after separating manuscript-generation materials into the private companion workspace. Public source documentation uses the Zenodo all-version concept DOI so the archived source remains internally consistent; the version-specific DOI is assigned by Zenodo for this release.\n\nVerification gates passed before release:\n- make qa: 10 PASS / 3 WARN-only optional future gates.\n- Rscript scripts/MRB/validate_pipeline.R: all checks passed.\n- Fresh-clone ./run_all.sh --quick plus validation: all expected outputs present; repository ready.</p>
VHACK-Bench and RQD: A Training-Free Benchmark and Metric for Reward Hacking in Open-Ended Visual Reinforcement Learning (Anonymous Supplementary Artifact)
Authors: Anonymous
Type: Report
Published: 2026-08-03

<p>Anonymous code and benchmark artifact accompanying a double-blind paper submission.<br>Please do not attempt to de-anonymize the authors.</p>
<p>This artifact provides the implementation and released benchmark for RQD<br>(Reward–Quality Divergence), a metric that decomposes the reward–quality gap during<br>open-ended visual reinforcement learning into (i) a static reward-model<br>miscalibration floor at initialization and (ii) a training-time "gaming" component<br>that grows above it. It also releases VHACK-Bench, a training-free probe suite that<br>scores any reward model for hackability, together with the Hack Susceptibility Rate<br>(HSR) metric.</p>
<p>Contents:<br>- vhack/ — source: the RQD metric family, reward models (anchor-oracle, mock<br>  hackable judge, VLM judge, anchor-grounded shaped reward), the HSR harness, the<br>  probe builder, the GRPO training loop, and the evaluation suite.<br>- data/probes/ — the VHACK-Bench hack-probe sets for two domains (chart, scene),<br>  each pairing an exploit-styled but factually wrong "trap" answer against a plainly<br>  correct "gold" answer, plus a datasheet (Gebru et al. format) documenting<br>  provenance, construction, and limitations.<br>- tests/ — CPU unit tests covering the metric, data schema, HSR contract, the<br>  anchor checker, and a regression test for the reward-decoding path.<br>- README.md — quickstart (CPU dry-run), reproduction instructions, and the headline<br>  results as reported in the paper.</p>
<p>Reproducibility: the CPU dry-run path (metric, data, HSR, anchor checks) runs with<br>only numpy/pytest. Full GPU experiments require a SLURM cluster with H200-class GPUs<br>and the commented GPU dependencies in requirements.txt (torch, transformers, trl,<br>vllm). Underlying images are not redistributed here; the datasheet documents how to<br>obtain the source ChartQA and GQA/Visual Genome images (CC BY 4.0).</p>
<p>License: MIT (see LICENSE).</p>
Roadmapping the Future of AI-Enabled AMR Research: A Landscape of Community Priorities
Authors: Cortade, Dana L., Baranowski, Catherine, Reider Apel, Amanda, Kelly, Peter J., Young, Kayla
Type: Report
Published: 2026-07-17

<p>This report presents findings from “Roadmapping the Future of AI-Enabled Antimicrobial Resistance Research”, an initiative carried out by The Align Foundation and funded by Google DeepMind. The project brought together a diverse representation of the antimicrobial resistance (AMR) community to prioritize key challenges and opportunities for the use of AI/ML in helping combat AMR. Through a series of workshops, participants explored a broad range of unmet data and modeling needs in AMR and collaboratively prioritized topics where AI/ML could have the most impact. Following the workshops, working groups were formed and tasked with translating workshop discussions into actionable proposals for dataset ideas and AI/ML models. Here, we summarize the workshop methodology and major themes that emerged from these discussions.</p>
Informe Preliminar-final de la intervención arqueológica preventiva mediante análisis de estructuras emergentes, sondeos y limpieza del Puente Romano de Iznalloz (Granada)
Authors: Toquero-Pérez, Carlos Alberto
Type: Report
Published: 2026-08-03

<p>Actividad arqueológica de análisis de estructuras emergentes y sondeos para analizar el puente y solicitar una declaración BIC del puente </p>
Supercomputers and Superpositions: Making Quantum Accelerators Accessible Within HPC Frameworks
Authors: Rathore, Omer, Basden, Alastair
Type: Report
Published: 2026-08-03

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<p>This report presents the outcomes of a four-month project funded through the National Federated Compute Services (NFCS) flexible funding call. The project examined how quantum computing resources could be made more accessible by integrating them within a federated high-performance computing landscape. It reviews current quantum--HPC integration approaches, reports findings from stakeholder and community engagement and sets out recommendations for developing more coordinated efforts across the UK.</p>
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Educause CPPC 2026 RRCoP Workshop Report
Authors: Armour, Damon, Bahr, Hauke, Cheung, Tran, Daher, Louis, Drake, William, Ellis, Carolyn, Groome, Rob, Kurtz, Chris
Type: Report
Published: 2026-07-08
Keywords: cybersecurity, regulated research, culture, higher education, educause

<p class="zfr3Q CDt4Ke "><span class="C9DxTc ">This report summarizes a full-day workshop delivered at EDUCAUSE CPPC ’26 on building collaborative, institution-wide approaches to research cybersecurity. The workshop focused on how institutions can respond to regulatory, sponsor, and mission-driven cybersecurity pressures through shared responsibility, coordinated governance, stakeholder engagement, and practical planning.</span></p>
<p class="zfr3Q CDt4Ke "><span class="C9DxTc ">Through expert panels, facilitated activities, and room-wide discussion, participants identified institutional pressures, mapped key stakeholders, explored strengths and gaps, and developed near-term action steps. The report identifies key themes that emerged throughout the day, including the importance of identifying champions, using stakeholder mapping and engagement to support cohesive planning efforts, and recognizing the needs of institutions early in their compliance journey. The report also contextualizes “Aha!” moments, key insights captured by participants throughout the workshop.</span></p>
<p class="zfr3Q CDt4Ke "><span class="C9DxTc ">The report documents resource needs identified during the workshop and highlights opportunities for RRCoP, Trusted CI, and other community groups to support future resource development. Overall, it emphasizes that sustainable research cybersecurity requires more than isolated technical or compliance efforts. It requires coordinated institutional action that supports the research mission while meeting evolving cybersecurity expectations.</span></p>
RESILIENCE White Paper: Digital Literacy and Researchers in the Study of Religion
Authors: Timpers, Lieneke, Nauwelaers, Nyala Karla, Bosschaert, Dries
Type: Report
Published: 2026-08-03
Keywords: Digital Humanities, Religious Studies, Digital Literacy, AI for Research

<p><em><span>This white paper aims to highlight the impact of the digital turn on the study of religion by</span></em><em><span> shedding light on the challenges researchers face, as well as the very real opportunities present within the digital turn. The paper presents a model for digital literacy for researchers in the study of religion and concludes with a series of recommendations to help researchers navigate the digital turn. It has been made possible thanks to KU Leuven’s contribution to RESILIENCE, as well as research conducted on the digital turn at the Faculty of Theology and Religious Studies.</span></em></p>
First Indigenous and local knowledge dialogue workshop for the IPBES assessment on the sustainable use of wild species
Authors: Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services
Type: Report
Published: 2019-05-07
Keywords: ILK, IPBES, Indigenous and Local Knowledge Systems, Dialogue, Workshop

<p>This report is from the indigenous and local knowledge (ILK) dialogue workshop for the IPBES assessment on the sustainable use of wild species (the “sustainable use assessment”), which was held from 6-7 May 2019, at the UNESCO Headquarters, Paris. The workshop aimed to enhance the participation of indigenous peoples and local communities (IPLCs) in the early stages of the assessment, discussing key themes, questions and approaches for the assessment.</p>
<p>The report aims to be a written record of the dialogue workshop, which can be used by assessment authors to inform their work on the sustainable use assessment, and also by others who may be interested in the subject of sustainable use of wild species and ILK. It can also be used by dialogue participants who may wish to review and contribute to the work of the sustainable use assessment going forward.</p>
<p>The report is not intended to be comprehensive or give final resolution to the many interesting discussions and debates that took place during the workshop. Instead, it is intended as a written record of the discussions, and this conversation will continue to evolve over the coming months. For this reason, clear points of agreement are discussed, but also, if there were diverging views among participants, these are also presented for further attention and discussion.</p>
Report on the Usage of Access Units for HEP Detector R&D
Authors: Mikuž, Marko
Type: Report
Published: 2026-08-03

<p><span>WP4 provides Transnational Access for detector R&D at eleven research infrastructures (RIs): three providing Test Beam (Task 4.1) access, two Detector Characterization (Task 4.2) and six Irradiations (Task 4.3).</span></p>
D4 - Report on the setups and algorithms for the measurement of the energy losses of non-conventional AC/DC substations (converters step-up and stepdown transformers) and the charge-discharge efficiency of electric storage systems with an overall on-site target uncertainty of 10 % in the losses. The setups will allow capturing signals from DC to 20 kHz in order to perform Power Quality and transient event analysis.
Authors: Giordano, Domenico
Type: Report
Published: 2026-08-03

<p>Deliverable D4:</p>
<p>Report on the setups and algorithms for the measurement of the energy losses of non-conventional AC/DC substations (converters step-up and stepdown transformers) and the charge-discharge efficiency of electric storage systems with an overall on-site target uncertainty of 10 % in the losses. The setups will allow capturing signals from DC to 20 kHz in order to perform Power Quality and transient event analysis.</p>
Report of the IPBES Indigenous and local knowledge dialogue workshop on scenarios of the future
Authors: Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services
Type: Report
Published: 2025-05-26
Keywords: IPBES, ILK, Workshop, Dialogue, Indigenous and Local Knowledge Systems

<p>This report summarises the proceedings of the Indigenous and local knowledge (ILK) dialogue workshop on scenarios of the future that was organized by the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystems Services (IPBES). The full title of the workshop agreed by the IPBES Plenary was “Workshop to reflect on scenarios and models to better account for different knowledge systems, including Indigenous and local knowledge systems, and Mother Earth-centric scenarios and models.”</p>
<p>The dialogue workshop was held in Subic Bay, the Philippines, from 23 to 26 May 2025. It aimed to provide a platform for discussion between Indigenous Peoples and local communities and members of the IPBES task forces on Indigenous and local knowledge and on scenarios and models, as well as others with experience and expertise in scenarios work.</p>
<p>This report aims to provide a written record of the dialogue workshop, which can inform the future work of the IPBES task forces and can be a resource for all dialogue participants who may wish to review and contribute to the IPBES work at the interface of scenarios and models and Indigenous and local knowledge, as well as others who may be interested in this theme. </p>
<p>The report is not intended to be comprehensive or to provide definitive resolution to the many engaging discussions that emerged during the workshop. Rather, it serves as a written record of those discussions, which will continue to develop and evolve in the months and years ahead. For this reason, clear points of agreement are discussed, but also, if there were diverging views among participants, these are also presented for further attention and discussion.</p>
Sentinel Data at CEDA: A user guide
Authors: Gray, Hayley
Type: Report
Published: 2026-08-03
Keywords: Sentinel, Copernicus, CEDA, Earth Observation, Remote Sensing, User Guide

<div class="n6owBd awi2gc">This user guide provides a comprehensive overview of discovering, accessing, and processing the Copernicus Sentinel satellite data hosted at the Centre for Environmental Data Analysis (CEDA). It is designed to assist researchers and environmental data scientists in navigating the UK-hosted Sentinel archive efficiently.</div>
<div class="n6owBd awi2gc">The documentation covers the following key topics:</div>
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<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Data Discovery:</strong> Guidelines for identifying relevant Sentinel missions (Sentinel-1 SAR, Sentinel-2, Sentinel-3, and Sentinel-5P) and understanding CEDA’s specific archive and rolling retention policies.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Search Methods:</strong> Instructions for using the CEDA Data Catalogue, Archive Directory Browser, Satellite Data Finder map interface, and the programmatic STAC API.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Data Access & Extraction:</strong> Methods for downloading data via direct HTTP/HTTPS, scriptable <code class="KDcb0c">wget</code> or <code class="KDcb0c">curl</code> commands, the CEDA Download API, and processing in place via JASMIN integration.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">File Structure & Tooling:</strong> An explanation of the standard <code class="KDcb0c">.SAFE</code> file container configuration and recommended processing tools, including ESA's SNAP toolbox, QGIS, GDAL, and relevant Python libraries (<code class="KDcb0c">rasterio</code>, <code class="KDcb0c">xarray</code>).</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Practical Workflows:</strong> A step-by-step example workflow for Sentinel-2 data discovery, NDVI computation, and spatial grid adjustments for multi-dimensional data analysis.</span></li>
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Sentinel‑1 SAR User Guide
Authors: Gray, Hayley
Type: Report
Published: 2026-08-03
Keywords: Sentinel-1, SAR, InSAR, SNAP, CEDA, Remote Sensing, Earth Observation, User Guide, Copernicus

<div class="n6owBd awi2gc">This user guide provides comprehensive instructions on how to download, process, and analyse Sentinel-1 Synthetic Aperture Radar (SAR) data for Interferometric SAR (InSAR) applications. It focuses on utilising European Space Agency (ESA) toolbox software to calculate real physical land displacement from multi-temporal satellite tracks.</div>
<div class="n6owBd awi2gc">The documentation covers the following technical steps and workflows:</div>
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<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">SAR Data Fundamentals:</strong> Overview of Sentinel-1 radar product types (SLC, GRD, OCN) and explicit constraints required for interferometry workflows.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Acquisition Pathways:</strong> Step-by-step download instructions for extracting radar data through the CEDA Satellite Data Finder, the CEDA Archive Browser directory paths, and the Copernicus Data Space Ecosystem (CDSE).</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">The .SAFE File Anatomy:</strong> Structural breakdown of the <code class="KDcb0c">.SAFE</code> container files, including the roles of the master manifest, subswath annotation metadata XML files, and complex I/Q measurement datasets.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">SNAP Graph Builder Co-Registration:</strong> Automated workflow design to accurately align multi-date master and slave image burst pairs using TOPSAR-Split, precise orbit correction files, geometric Back-Geocoding, and Enhanced Spectral Diversity (ESD).</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Interferogram Generation:</strong> Instructions for calculating wrapped phase values, evaluating surface coherence windows, and running continuous image debursting.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Subswath Merging & Noise Filtering:</strong> Techniques for combining IW1, IW2, and IW3 subswaths alongside topographic phase removal, pixel multi-looking, and Goldstein phase filtering.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Phase Unwrapping via SNAPHU:</strong> Terminal instructions for exporting wrapped arrays, running statistical network-flow unwrapping algorithms, and re-importing continuous phase data into the desktop suite.</span></li>
<li class="Z1qcYe"><span class="iNqyIf"><strong class="rQesXe MPyX">Displacement Mapping & Georeferencing:</strong> Conversion calculations into Line-of-Sight (LOS) displacement variables, Range-Doppler terrain corrections utilizing digital elevation models (DEM), low-coherence masking via Band Maths, and exporting clean GeoTIFF packages for standard GIS environments.</span></li>
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Report of the indigenous and local knowledge dialogue workshop on scenarios and the Nature Futures Framework
Authors: Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services
Type: Report
Published: 2021-09-30
Keywords: IPBES, ILK, Indigenous and Local Knowledge Systems, Dialogue, Workshop

<p>This is the report on the indigenous and local knowledge (ILK) dialogue workshop on scenarios and the Nature Futures Framework (NFF). The dialogue was held online due to COVID-19, with three regional sessions over 28-30 September 2021 and a final plenary session on 19 October 2021. The report aims to provide a written record of the dialogue workshop, which can be used to inform the further development of the NFF and its methodological guidance.</p>
<p>The report also aims to be a resource for all dialogue participants and others who are interested in working with ILK and scenarios. The report is not intended to be comprehensive or give final resolution to the many interesting discussions and debates that took place during the workshop. Instead, it is intended as a written record of the discussions, and this conversation will continue to evolve over the coming months. For this reason, clear points of agreement are discussed, but also, if there were diverging views among participants, these are also presented for further attention and discussion.</p>