reapxdev/zenodo-scraper huggingface dataset:
Multimodal AI Agents in Clinical Decision Support: Integrating Imaging, Genomics, and EHR Data
Authors: Acharya, Vivek
Type: Journal
Published: 2025-07-30

<p>The integration of diverse healthcare data—medical imaging, genomics, and electronic health records (EHRs)—presents a transformative opportunity for advancing clinical decision support through multimodal artificial intelligence (AI) agents. This article explores how AI systems capable of synthesizing heterogeneous data sources are redefining diagnostic accuracy, personalized treatment, and predictive modeling in modern medicine. Focusing on real-world applications in oncology, cardiology, neurology, and rare disease diagnostics, the paper examines fusion strategies, infrastructure requirements, and emerging standards that enable effective data interoperability. It highlights notable case studies and platforms that demonstrate tangible improvements in clinical workflows and patient outcomes. Additionally, the article addresses key challenges including data harmonization, model interpretability, and ethical considerations, while outlining future directions such as foundation models, digital twins, and the regulatory landscape. Through a comprehensive review, this work underscores the critical role of multimodal AI agents in achieving the goals of precision medicine and intelligent, data-driven healthcare delivery.</p>
AdeyinkaNew12/ai-basin-hydrology: Hydrographic Characteristics of AI Data Center Siting in the Contiguous United States
Authors: Adeyinka Olaseinde, servis
Type: Software
Published: 2026-08-03

<p>This release provides the updated AI Basin Hydrology workflow with the finalized repository structure.</p>
<p>The repository contains reproducible Python workflows for evaluating hydrographic and hydrologic characteristics of AI data-center siting across the contiguous United States.</p>
<p>The workflow integrates AI facility locations with HydroBASINS, HydroRIVERS, HydroLAKES, Aqueduct 4.0 water-stress indicators, aquifer datasets, and NOAA National Water Model hydrologic metrics.</p>
<p>Included analyses:</p>
<ul>
<li>Major river proximity analysis</li>
<li>Water-feature distance ECDF analysis</li>
<li>HUC2 facility distribution mapping</li>
<li>National Water Model hydro-regime analysis</li>
<li>Water-stress siting analysis</li>
<li>Integrated water-source pathway assessment</li>
</ul>
NRC0: Preregistered analysis plan — Nature Recovery Cycle (ISGDS)
Authors: Oh, Seokhoon
Type: Preprint
Published: 2026-08-03

<p>SHA-256 <code class="bg-text-200/5 border border-0.5 border-border-300 text-danger-000 whitespace-pre-wrap rounded-[0.4rem] px-1 py-px text-[0.9rem]">6b861aacf1c57292d0246ed5359be21d5c2a448860d1c4ac0a8ab3caefe60753</code></p>
Ambiente e sociedade no Sul Global: perspectivas críticas para um futuro sustentável, justo e plural
Authors: Silva, Viviane Farias, Torres, Robinson Karol Salinas, Maracajá, Kettrin Farias Bem, Araújo, Maria Sallydelândia de F., Ribeiro, George do Nascimento, Bittencourt, Matheus Augusto, Silva, Janaina Barbosa da, Ramos, Gilsijane Vieira, Brandão, Thiego Barros de A., Ramos, Jailton Garcia
Type: Book
Published: 2026-08-03
Keywords: Fatores específicos que afetam a ecologia / queimadas / objetos não biodegradáveis, Ambiente e sociedade no Sul Global

<div>Com entusiasmo apresentamos "Ambiente e Sociedade no Sul Global", uma coletânea que reúne reflexões, análises e estudos voltados para os desafios socioambientais que marcam diferentes territórios do Sul Global, com especial atenção ao contexto brasileiro.</div>
<div>A ideia central da coletânea é compor um diálogo interdisciplinar entre pesquisadores que investigam as interações entre sociedade, natureza e desenvolvimento, destacando questões como mudanças climáticas, gestão de recursos naturais, riscos ambientais e estratégias de sustentabilidade. Os capítulos apresentam abordagens diversas, que vão desde estudos de caso e análises territoriais até revisões bibliográficas e investigações preditivas, demonstrando a pluralidade de perspectivas que compõem o debate ambiental no Sul Global.</div>
<div>O livro foi organizado em oito capítulos, cada um trazendo contribuições específicas para a compreensão das relações entre ambiente e sociedade. </div>
<div>
<div>Diante de um cenário global marcado por intensas transformações ambientais, pressões sobre os recursos naturais e desafios para o desenvolvimento sustentável, “Ambiente e Sociedade no Sul Global” apresenta-se como uma contribuição relevante para pesquisadores, estudantes e profissionais das áreas de Ciências Ambientais, Geografia, Planejamento Territorial e áreas afins.</div>
<div>Esperamos que os debates e reflexões reunidos nesta obra possam estimular novas pesquisas, ampliar o diálogo entre diferentes áreas do conhecimento e inspirar iniciativas voltadas para a construção de sociedades mais sustentáveis e resilientes. Que esta coletânea contribua para fortalecer a compreensão crítica sobre os desafios ambientais contemporâneos e para fomentar ações que promovam uma relação mais equilibrada entre sociedade e natureza.</div>
</div>
TEXNALOGIYA RIVOJLANGAN DAVRDA MAKTABLARDA ADABIYOT O'QITISH METODIKASI
Authors: Tolipova Jannat Xasan qizi
Type: Dataset
Published: 2026-08-03
Keywords: Texnalogiya, metodika, stereotip, interaktiv usullar, sun'iy intelekt, innovatsion pedagogika, raqamli texnalogiya.

<p class="MsoNormal">Ushbu maqolada globallashuv va texnologiyalar jadal rivojlanayotgan davrda o‘quvchilarning tafakkur tarzi hamda adabiyotga bo‘lgan munosabati tubdan o‘zgarayotgani ta’kidlanadi. Darslarni zamonaviy axborot-kommunikatsiya texnologiyalari asosida tashkil etish, asar qahramonlarini o‘rganishda stereotiplardan xoli bo‘lish va yoshlarda mustaqil, tanqidiy fikrlashni shakllantirish masalalari chuqur tahlil qilingan. O‘qituvchilarning tayyor tahlillarni taqdim etishi o‘rniga, o‘quvchilarning o‘zlariga xos individual fikrlarini qo‘llab-quvvatlash va ularni ijodiy izlanishga undashning samarali usullari yoritilgan.</p>
Kompetencje przywódcze kandydatów do służby wojskowej na przykładach wybranych krajów NATO
Authors: Szkudlarek, Iwona
Type: Book chapter
Published: 2018-07-23
Keywords: leadership competences, military service, NATO member states, professionalization of the armed forces, kompetencje przywódcze, służba wojskowa, państwa NATO, profesjonalizacja sił zbrojnych

<p class="font-claude-response-body break-words whitespace-normal"><strong>Summary</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">The article examines the leadership competences required of voluntary military service candidates in three NATO countries: the United States, the Netherlands, and Germany, based on a framework distinguishing base, professional, social, and conceptual competences. In the US Army, recruitment emphasizes candidate age (17–22) along with character traits and social skills, developed through a three-pillar training system. The Dutch Army recruits based on personality traits, learning ability, and communication skills, with little weight given to formal education, using a "leadership compass" as its central model. The Bundeswehr prioritizes professional and social competences within the concept of "Innere Führung" (internal leadership). Despite differing approaches, leadership competences remain a key element of recruitment and selection across all three systems.</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Keywords:</strong> leadership competences, military service, NATO member states, professionalization of the armed forces</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Streszczenie</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">Artykuł analizuje kompetencje przywódcze wymagane od kandydatów do służby wojskowej w trzech krajach NATO: USA, Holandii i Niemczech, w oparciu o klasyfikację kompetencji bazowych, profesjonalnych, społecznych i konceptualnych. W armii amerykańskiej nacisk kładzie się na wiek kandydatów (17–22 lata) oraz cechy charakteru i umiejętności społeczne, kształtowane w trójfilarowym systemie szkolenia. W armii holenderskiej rekrutacja opiera się na cechach osobowości, zdolności uczenia się i komunikacji, przy niewielkim znaczeniu wykształcenia formalnego, a centralnym modelem jest tzw. kompas przywództwa. W Bundeswehrze priorytetem są kompetencje profesjonalne i społeczne, realizowane w ramach koncepcji „wewnętrznego dowodzenia” (Innere Führung). Mimo różnic w podejściu, we wszystkich trzech systemach kompetencje przywódcze stanowią kluczowy element rekrutacji i selekcji przyszłych żołnierzy.</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Słowa kluczowe:</strong> kompetencje przywódcze, służba wojskowa, państwa NATO, profesjonalizacja sił zbrojnych</p>
Cell-Type-Resolved Ligand-Receptor Connectome (CLRC)
Authors: Pak, Veronika, Hong, Joon Hwan, Iturria-Medina, Yasser
Type: Dataset
Published: 2026-08-03

<p class="font-claude-response-body break-words whitespace-normal">This dataset contains the cell-type-resolved ligand–receptor connectome (CLRC) described in Pak, Hong et al., <em>Cell-Type-Resolved Ligand-Receptor Connectome of the Human Brain and Its Disruption in Alzheimer's Disease</em>. The CLRC maps 1,014 ligand–receptor pairs across 2,133 region–cell-type nodes derived from the Allen Brain Cell (ABC) Atlas, yielding directed communication matrices that characterize cell-type-specific signalling across the human brain.</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Contents</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">clrc_gpu.h5 (119.3 GB, HDF5) — ligand–receptor communication scores computed with NeuronChat.</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Conventions</strong></p>
<ul class="[li_&]:mb-0 [li_&]:mt-1 [li_&]:gap-1 [&:not(:last-child)_ul]:pb-1 [&:not(:last-child)_ol]:pb-1 list-disc flex flex-col gap-1 pl-8 mb-3 print:block print:space-y-1">
<li class="font-claude-response-body whitespace-normal break-words pl-2">Matrices are directed: M[i, j] denotes signalling from node i (ligand-expressing) to node j (receptor-expressing).</li>
<li class="font-claude-response-body whitespace-normal break-words pl-2">Nodes are ordered [describe ordering].</li>
<li class="font-claude-response-body whitespace-normal break-words pl-2">Values are [raw NeuronChat scores / normalized / thresholded].</li>
</ul>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Usage</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">Read slices rather than loading datasets into memory in full:</p>
<div class="relative group/copy bg-bg-000/50 border-0.5 border-border-400 rounded-lg focus:outline-none focus-visible:ring-2 focus-visible:ring-accent-100">
<div class="overflow-x-auto">
<pre class="code-block__code !my-0 !rounded-lg !text-sm !leading-relaxed p-3.5"><code>import h5py
with h5py.File("clrc_gpu.h5", "r") as f:
    print(list(f.keys()))
    mat = f["[dataset name]"][0]</code></pre>
</div>
</div>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Derivation</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">Communication scores were computed with NeuronChat from single-nucleus transcriptomic data in the Allen Brain Cell Atlas. Analysis code: github.com/neuropm-lab/CLRC</p>
<p class="font-claude-response-body break-words whitespace-normal"><strong>Attribution</strong></p>
<p class="font-claude-response-body break-words whitespace-normal">Derived from the Allen Brain Cell Atlas, © Allen Institute for Brain Science, available under CC-BY-4.0. Please cite the original atlas alongside this dataset.</p>
Closure Is a Handoff, Not an Endpoint:  Why closure should be judged by the quality of the handoff, not the completion of construction
Authors: Nelson, Priscilla P.
Type: Working paper
Published: 2026-08-03
Keywords: mine closure, governance handoff, institutional stewardship, stewardship, mine reclamation, long-term liability

<p><span>Mining closure is conventionally treated as an endpoint, a stage at which financial, regulatory, and technical obligations are formally discharged as work concludes. This essay argues that closure is better understood as a governance handoff between institutional regimes rather than a terminus, since the physical facility's risks persist on a timescale independent of any administrative declaration. It proposes that a defensible handoff requires a clearly identified receiving institution, genuine transfer of knowledge rather than documents alone, preserved monitoring and interpretive capability, defined triggers for renewed intervention, funding structured to survive institutional change, and an explicit statement of remaining uncertainty. Reframing closure this way shifts the standard for success from completion of construction to the durability of the institutions that inherit the site.</span></p>
Prevention and Management of Lyme Disease in the United States
Authors: Nicolas Hulscher, MPH, James A. Thorp, MD, Drew Pinsky, MD, Peter Gillooly, MSc, Harvey Risch, MD, PhD, Peter A. McCullough, MD, MPH, Kelly Victory, MD
Type: Preprint
Published: 2026-08-03

<p><strong><span>Abstract</span></strong></p>
<p class="MsoNormal">Lyme disease is the most common vector-borne disease in the United States, with approximately 476,000 people diagnosed and treated each year. Most Lyme-associated morbidity is preventable through three sequential, evidence-based decisions in the hours and days after an embedded tick is found. First, the tick should be removed promptly with clean, fine-tipped tweezers grasping at the skin surface and pulling upward with steady, even pressure; because the risk of <em>Borrelia burgdorferi</em> transmission rises with attachment duration and becomes substantial after roughly 36 hours, prompt removal is the single most effective preventive step. Second, single-dose antibiotic prophylaxis (doxycycline 200 mg for adults, or 4.4 mg/kg to a maximum of 200 mg for children, given within 72 hours of removal) is warranted only for high-risk bites, defined by all three factors: an identified <em>Ixodes</em> vector, a highly endemic area, and attachment for at least 36 hours; bites that do not meet all three criteria are monitored for 30 days rather than using the aforementioned prophylaxis. Third, established early Lyme disease, presenting as erythema migrans and diagnosed clinically without serologic testing in endemic areas, is treated with doxycycline 100 mg twice daily for 10 days, or amoxicillin or cefuroxime axetil for 14 days, with randomized evidence favoring the shortest effective course. The disseminated manifestations of Lyme disease—including Lyme arthritis, neuroborreliosis, and carditis—generally respond well to guideline-directed antibiotic therapy. For most patients, a 14- to 28-day course of oral doxycycline is sufficient, while parenteral ceftriaxone is reserved for specific clinical indications. A minority of patients report persistent nonspecific symptoms after treatment; these do not respond to prolonged or repeated antibiotics. Natural compounds have demonstrated promising in vitro activity against persistent forms of <em>Borrelia burgdorferi</em>; however, these findings have not yet been confirmed in clinical studies. These recommendations align with the 2020 Infectious Diseases Society of America, American Academy of Neurology, and American College of Rheumatology guideline and its supporting trials. Prevention rests on personal protective measures, tick checks, and skin repellents. Among plant-based options, oil of lemon eucalyptus and the essential oils of clove, thyme, and cedarwood have the strongest evidence of activity against ticks. Because prophylaxis is frequently prescribed in practice without meeting the high-risk criteria, the greatest opportunity to reduce morbidity lies not in new therapeutics but in the consistent, criteria-based application of existing high-quality evidence.</p>
Introdução ao Setor de Serviços - material didático (Apostila)
Authors: Spolon, Ana Paula Garcia, Santos, Lúcia Oliveira da Silveira
Type: Lesson
Published: 2026-04-02
Keywords: Hospitality

<p><span><span>Apostila desenvolvida para apresentar as funções básicas do setor de serviços, especialmente voltadas para a hotelaria e a restauração, para os cursos do projeto Qualifica Hotelaria, desenvolvido pela Universidade Federal Fluminense em parceria com a Fundação Euclides da Cunha e o Ministério da Igualdade Racial. </span></span></p>
<ul>
<li><span><span>Introdução ao setor de Serviços</span></span></li>
<li><span><span>Estrutura e funcionamento </span></span></li>
<li><span><span>O setor de turismo e hospitalidade</span></span></li>
<li><span><span>Tipos de empresas e formas de organização</span></span></li>
<li><span><span>Hierarquia, cargos e evolução</span></span></li>
<li><span><span>Dinâmicas específicas do setor</span></span></li>
<li><span><span>Prestação de serviços a terceiros</span></span></li>
</ul>
github.com/broadinstitute/warp/scANVI
Authors: broadinstitute
Type: Software
Published: 2026-08-03

<p>Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas using GEX and reference alone.</p>
github.com/broadinstitute/warp/TestscANVI
Authors: broadinstitute
Type: Software
Published: 2026-08-03

<h3>Warp Analysis Research Pipelines</h3>
<p>The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators.</p>
<p>WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like the Human Cell Atlas and the BRAIN Initiative. WARP pipelines are rigorously scientifically validated, high scale, reproducible and open source, released under the <a href="https://github.com/broadinstitute/warp/blob/master/LICENSE">BSD 3-Clause license</a>.</p>
<h3>Pipeline releases</h3>
<p>All pipeline releases are listed on the WARP <a href="https://github.com/broadinstitute/warp/releases">releases page</a>. To discover and search releases, use the WARP command-line tool <a href="https://github.com/broadinstitute/warp/tree/develop/wreleaser">Wreleaser</a>.</p>
<h3>WARP Dockers and custom tools in warp-tools repository</h3>
<p>All Dockers and custom tools used for WARP's WDL Workflows are maintained in a separate repository, <a href="https://github.com/broadinstitute/warp-tools">warp-tools</a>.</p>
<h3>WARP documentation</h3>
<p>Read more about our pipelines and repository on the <a href="https://broadinstitute.github.io/warp/">WARP documentation site</a>.</p>
<p>To contribute to WARP, please read the <a href="https://broadinstitute.github.io/warp/docs/contribution/README">contribution guidelines</a>.</p>
<h3>Citing WARP</h3>
<p>When citing WARP, please use the following:</p>
<p>Degatano, K.; Awdeh, A.; Dingman, W.; Grant, G.; Khajouei, F.; Kiernan, E.; Konwar, K.; Mathews, K.; Palis, K.; Petrillo, N.; Van der Auwera, G.; Wang, C.; Way, J.; Pipelines, W. WDL Analysis Research Pipelines: Cloud-Optimized Workflows for Biological Data Processing and Reproducible Analysis. Preprints 2024, 2024012131. https://doi.org/10.20944/preprints202401.2131.v1</p>
<p><a href="https://github.com/broadinstitute/warp/actions?query=workflow%3A%22Deploy+WARP+Website%22"></a></p>
XORAZM VILOYATINING ISSIQ-QURUQ IQLIM SHAROITIDA SANOATLASHTIRILGAN QURILISH TEXNOLOGIYALARI ASOSIDA O'RTA QAVATLI TURAR-JOY BINOLARINI LOYIHALASH TAMOYILLARI
Authors: Eshchanov Sherzod Alimbayevich
Type: Dataset
Published: 2026-08-03
Keywords: sanoatlashtirilgan qurilish, iqlimga moslashuv, o'rta qavatli uy-joy, issiq quruq iqlim, Xorazm, issiqlik izolyatsiyasi, energiya samaradorligi, oldindan tayyorlangan konstruksiyalar.

<p class="MsoNormal">Ushbu maqolada Xorazm viloyatining issiq va quruq iqlim sharoitlariga moslashtirilgan, sanoatlashtirilgan qurilish texnologiyalari asosida o'rta qavatli uy-joy binolarini loyihalash masalalari ilmiy asosda ko'rib chiqilgan. Tadqiqot doirasida viloyatning iqlim xususiyatlari (o‘rtacha yillik harorat +13,5°C, iyul oyida +32°C gacha, yillik yog‘ingarchilik 90-110 mm) tahlil qilingan hamda zamonaviy sanoat qurilish usullari - oldindan tayyorlangan temir-beton elementlar, strukturaviy panel tizimlar va modular yig‘ma konstruksiyalar - bu sharoit uchun qo‘llanilishi o‘rganilgan. Maqolada issiqlik izolyatsiyasi, quyosh radiatsiyasidan himoya va binoning enersetiqlik samaradorligini oshirishga qaratilgan arxitekturaviy-konstruktiv yechimlar taklif etilgan. Tadqiqot natijalari Xorazm viloyatida qurilayotgan ko‘p qavatli uy-joy majmualariga tatbiq etish uchun amaliy ahamiyat kasb etadi.</p>
github.com/broadinstitute/warp/TestGlimpse2LowPassImputationQC
Authors: broadinstitute
Type: Software
Published: 2026-08-03

<h3>Warp Analysis Research Pipelines</h3>
<p>The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators.</p>
<p>WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like the Human Cell Atlas and the BRAIN Initiative. WARP pipelines are rigorously scientifically validated, high scale, reproducible and open source, released under the <a href="https://github.com/broadinstitute/warp/blob/master/LICENSE">BSD 3-Clause license</a>.</p>
<h3>Pipeline releases</h3>
<p>All pipeline releases are listed on the WARP <a href="https://github.com/broadinstitute/warp/releases">releases page</a>. To discover and search releases, use the WARP command-line tool <a href="https://github.com/broadinstitute/warp/tree/develop/wreleaser">Wreleaser</a>.</p>
<h3>WARP Dockers and custom tools in warp-tools repository</h3>
<p>All Dockers and custom tools used for WARP's WDL Workflows are maintained in a separate repository, <a href="https://github.com/broadinstitute/warp-tools">warp-tools</a>.</p>
<h3>WARP documentation</h3>
<p>Read more about our pipelines and repository on the <a href="https://broadinstitute.github.io/warp/">WARP documentation site</a>.</p>
<p>To contribute to WARP, please read the <a href="https://broadinstitute.github.io/warp/docs/contribution/README">contribution guidelines</a>.</p>
<h3>Citing WARP</h3>
<p>When citing WARP, please use the following:</p>
<p>Degatano, K.; Awdeh, A.; Dingman, W.; Grant, G.; Khajouei, F.; Kiernan, E.; Konwar, K.; Mathews, K.; Palis, K.; Petrillo, N.; Van der Auwera, G.; Wang, C.; Way, J.; Pipelines, W. WDL Analysis Research Pipelines: Cloud-Optimized Workflows for Biological Data Processing and Reproducible Analysis. Preprints 2024, 2024012131. https://doi.org/10.20944/preprints202401.2131.v1</p>
<p><a href="https://github.com/broadinstitute/warp/actions?query=workflow%3A%22Deploy+WARP+Website%22"></a></p>