reapxdev/zenodo-scraper huggingface dataset:
Data for Large parameter uncertainty persists in soil food web models integrating stoichiometry, respiration and assimilation
Authors: Buchkowski, Robert, Brown, George, Bosello, Francesca, Demetrio, Wilian, Cooper, Miguel, Thébault, Elisa, Barreto, Carlos, Lindo, Zoë, Mathieu, Jerome
Type: Model
Published: 2026-07-31

<h3><strong>Data and Code Description</strong></h3>
<p>This repository contains the data and model code used to replicate the results of a recently accepted paper examining parameter and structural uncertainty in soil food web models.</p>
<h4><strong>Data</strong></h4>
<ul>
<li>The data includes:
<ul>
<li>Macrofauna data</li>
<li>Resource base information</li>
<li>Selected model parameters</li>
</ul>
</li>
<li>To fully replicate the analysis, you will also need:
<ul>
<li>The <strong>StoicLife</strong> database DOI: 10.1038/s41597-025-04852-w</li>
<li>Data from the cited papers by <strong>Lang et al. </strong>DOI: 10.1111/oik.04419</li>
<li>Feeding guide data from <strong>Potapov et al. </strong>DOI: 10.1111/brv.12832</li>
</ul>
</li>
</ul>
<p>However, if you only wish to reproduce the model results without sourcing the original datasets, you can use the provided <code>.RDS</code> files (<code>feedingmats_Itatinga</code> and <code>properties_Itatinga</code>). These files allow you to run scripts 2–4 without rebuilding communities or downloading additional data.</p>
<h4><strong>Code</strong></h4>
<ul>
<li>The scripts include all code for the model analysis. Scripts are numbered in sequence, with letters indicating subroutines or related analyses.</li>
</ul>
<p><strong>Script Overview:</strong></p>
<ol>
<li><strong>Script 1</strong>: Loads data and builds communities for model input.</li>
<li><strong>Script 2</strong>: Performs food web analysis, including parameter draws and data summarization.</li>
<li><strong>Script 3</strong>: Conducts parameter sensitivity analysis by systematically modifying each parameter.</li>
<li><strong>Script 4</strong>: Runs the 13C tracer experiment.</li>
<li><strong>Script 5</strong>: Supplemental question about Coleoptera feeding.</li>
<li><strong>Script 6</strong>: Supplemental question about adding mesofauna.</li>
</ol>