Invisible gems – phylogenomics of Tetrastichinae jewel wasps (Hymenoptera: Eulophidae) reveals cryptic taxa and rampant polyphyly
Authors: Kärrnäs, Emma
Type: Dataset
Published: 2026

<p>Supplemantary data for Kärrnäs et al. (2026). Here you can find all the alignment files, partition files, treefiles and concordance factor stats that formed part of the study. Other supplementary material (Supplementary methods, specimen data, UCE bait set etc.) can be found at [link-go-here].</p>
<p> </p>
<h3><strong>Alignments</strong></h3>
<ul>
<li>
<ul>
<li><strong>A1_busco.phy</strong>: 3033 BUSCOs and 163 taxa</li>
<li><strong>A2_uce_50.phy</strong>: 1820 UCEs and 219 taxa (50% taxon coverage dataset)</li>
<li><strong>A3_uce_70.phy</strong>: 1194 UCEs and 219 taxa (70% taxon coverage dataset)</li>
<li><strong>A4_uce_80.phy</strong>: 484 UCEs and 217 taxa (80% taxon coverage dataset)</li>
<li><strong>A5_uce_90.phy</strong>: 129 UCEs and 216 taxa (90% taxon coverage dataset)</li>
<li><strong>A6_mt.fasta</strong>: trimmed mitochondrial alignment with 12 mitochondrial genes and 177 taxa</li>
<li><strong>atp6.fasta</strong>:<strong> </strong>raw alignment of ATP6 with 170 taxa</li>
<li><strong>cox1.fasta</strong>: raw alignment of COI with 178 taxa</li>
<li><strong>cox2.fasta</strong>:<strong> </strong>raw alignment of COII with 178 taxa</li>
<li><strong>cox3.fasta</strong>:<strong> </strong>raw alignment of COIII with 178 taxa</li>
<li><strong>cytb.fasta</strong>:<strong> </strong>raw alignment of CYTB with 178 taxa</li>
<li><strong>nad1.fasta</strong>:<strong> </strong>raw alignment of NAD1 with 177 taxa</li>
<li><strong>nad2.fasta</strong>:<strong> </strong>raw alignment of NAD2 with 111 taxa</li>
<li><strong>nad3.fasta</strong>:<strong> </strong>raw alignment of NAD3 with 167 taxa</li>
<li><strong>nad4.fasta</strong>: raw alignment of NAD4 with 177 taxa</li>
<li><strong>nad5.fasta</strong>: raw alignment of NAD5 with 178 taxa</li>
<li><strong>nad6.fasta</strong>:<strong> </strong>raw alignment of NAD6 with 154 taxa</li>
<li><strong>nad4l.fasta</strong>:<strong> </strong>raw alignment of NAD4L with 118 taxa</li>
</ul>
</li>
</ul>
<p> </p>
<h3><strong>Partition files</strong></h3>
<ul>
<li>
<ul>
<li><strong>busco_part.nex</strong>: partition file for the tree inference of the BUSCO dataset</li>
<li><strong>uce_part_50.nex</strong>: partition file for the tree inference of the 50% taxon coverage UCE dataset</li>
<li><strong>uce_part_70.nex</strong>: partition file for the tree inference of the 70% taxon coverage UCE dataset</li>
<li><strong>uce_part_80.nex</strong>: partition file for the tree inference of the 80% taxon coverage UCE dataset</li>
<li><strong>uce_part_90.nex</strong>: partition file for the tree inference of the 90% taxon coverage UCE dataset</li>
</ul>
</li>
</ul>
<p> </p>
<h3><strong>Raw output trees</strong></h3>
<ul>
<li>
<ul>
<li><strong>tree1_busco.treefile</strong>: IQ-TREE tree for 3033 BUSCOs and 163 taxa – with concordance factors</li>
<li><strong>tree1.2_busco.treefile</strong>: IQ-TREE tree for 3033 BUSCOs and 163 taxa – run 2</li>
<li><strong>tree1.3_busco.treefile</strong>: IQ-TREE tree for 3033 BUSCOs and 163 taxa – run 3</li>
<li><strong>tree1.4_busco.treefile</strong>: IQ-TREE tree for 3033 BUSCOs and 163 taxa – run 4</li>
<li><strong>tree1.5_busco.treefile</strong>: IQ-TREE tree for 3033 BUSCOs and 163 taxa – run 5</li>
<li><strong>tree2_busco_ast.treefile</strong>: wASTRAL tree 3033 BUSCOs and 163 taxa</li>
<li><strong>tree3_uce_50.treefile</strong>: IQ-TREE tree for 1820 UCEs and 219 taxa – with concordance factors (50% taxon coverage dataset)</li>
<li><strong>tree3.2_uce_50.treefile</strong>: IQ-TREE tree for 1820 UCEs and 219 taxa – run 2</li>
<li><strong>tree3.3_uce_50.treefile</strong>: IQ-TREE tree for 1820 UCEs and 219 taxa – run 3</li>
<li><strong>tree3.4_uce_50.treefile</strong>: IQ-TREE tree for 1820 UCEs and 219 taxa – run 4</li>
<li><strong>tree3.5_uce_50.treefile</strong>: IQ-TREE tree for 1820 UCEs and 219 taxa – run 5</li>
<li><strong>tree4_uce_50_ast.treefile</strong>: wASTRAL tree 1820 UCEs and 219 taxa (50% taxon coverage dataset)</li>
<li><strong>tree5_mt.treefile</strong>: IQ-TREE tree 12 mitochondrial genes and 177 taxa</li>
<li><strong>tree6_uce_70.treefile: </strong>IQ-TREE tree for 1 194 UCEs and 219 taxa (70% taxon coverage dataset)</li>
<li><strong>tree7_uce_80.treefile:</strong> IQ-TREE tree for 484 UCEs and 217 taxa (80% taxon coverage dataset)</li>
<li><strong>tree8_uce_90.treefile:</strong> IQ-TREE tree for 129 UCEs and 216 taxa (90% taxon coverage dataset)</li>
</ul>
</li>
</ul>
<p> </p>
<h3><strong>Concordance factor stats</strong></h3>
<ul>
<li>
<ul>
<li><strong>conc1_busco.txt</strong>: concordance factor stats from IQ-TREE tree for 3033 BUSCOs and 163 taxa</li>
<li><strong>conc2_uce.txt</strong>: concordance factor stats from IQ-TREE tree for 1820 UCEs and 219 taxa (50% taxon coverage dataset)</li>
</ul>
</li>
</ul>