Star Trek 25th Anniversary Game play is broken down into several "episodes" reminiscent of the Star Trek television series (the game is portrayed as "the lost fourth season"). The game contains a copy-protection system that asks the player to consult the game's manual to find out what star system to warp to on the navigation map. At the end of each mission, players received a message from Starfleet Command on how well they have done (100% being perfect and less than 50% is considered a botched mission).