pwc-archive/papers-with-abstracts huggingface dataset:
IDCIA: Immunocytochemistry Dataset for Cellular Image Analysis
Authors: Abdurahman Ali Mohammed, Catherine Fonder, Donald S. Sakaguchi, Wallapak Tavanapong, Surya K. Mallapragada, Azeez Idris
Date: 2024-11-13 00:00:00
Tasks: Articles

We present a new annotated microscopic cellular image dataset to improve the effectiveness of machine learning methods for cellular image analysis. Cell counting is an important step in cell analysis. Typically, domain experts manually count cells in a microscopic image. Automated cell counting can potentially eliminate this tedious, time-consuming process. However, a good, labeled dataset is required for training an accurate machine learning model. Our dataset includes microscopic images of cells, and for each image, the cell count and the location of individual cells. The data were collected as part of an ongoing study investigating the potential of electrical stimulation to modulate stem cell differentiation and possible applications for neural repair. Compared to existing publicly available datasets, our dataset has more images of cells stained with more variety of antibodies (protein components of immune responses against invaders) typically used for cell analysis. The experimental results on this dataset indicate that none of the five existing models under this study are able to achieve sufficiently accurate count to replace the manual methods. The dataset is available at https://figshare.com/articles/dataset/Dataset/21970604.
Reliability, Resilience and Human Factors Engineering for Trustworthy AI Systems
Authors: Saurabh Mishra, Anand Rao, Ramayya Krishnan, Bilal Ayyub, Amin Aria, Enrico Zio
Date: 2024-11-13 00:00:00

As AI systems become integral to critical operations across industries and services, ensuring their reliability and safety is essential. We offer a framework that integrates established reliability and resilience engineering principles into AI systems. By applying traditional metrics such as failure rate and Mean Time Between Failures (MTBF) along with resilience engineering and human reliability analysis, we propose an integrate framework to manage AI system performance, and prevent or efficiently recover from failures. Our work adapts classical engineering methods to AI systems and outlines a research agenda for future technical studies. We apply our framework to a real-world AI system, using system status data from platforms such as openAI, to demonstrate its practical applicability. This framework aligns with emerging global standards and regulatory frameworks, providing a methodology to enhance the trustworthiness of AI systems. Our aim is to guide policy, regulation, and the development of reliable, safe, and adaptable AI technologies capable of consistent performance in real-world environments.
CoCoP: Enhancing Text Classification with LLM through Code Completion Prompt
Authors: Mohammad Mahdi Mohajeri, Mohammad Javad Dousti, Majid Nili Ahmadabadi
Date: 2024-11-13 00:00:00
Tasks: Classification, Code Completion, Few-Shot Learning, text-classification, Text Classification

Text classification is a fundamental task in natural language processing (NLP), and large language models (LLMs) have demonstrated their capability to perform this task across various domains. However, the performance of LLMs heavily depends on the quality of their input prompts. Recent studies have also shown that LLMs exhibit remarkable results in code-related tasks. To leverage the capabilities of LLMs in text classification, we propose the Code Completion Prompt (CoCoP) method, which transforms the text classification problem into a code completion task. CoCoP significantly improves text classification performance across diverse datasets by utilizing LLMs' code-completion capability. For instance, CoCoP enhances the accuracy of the SST2 dataset by more than 20%. Moreover, when CoCoP integrated with LLMs specifically designed for code-related tasks (code models), such as CodeLLaMA, this method demonstrates better or comparable performance to few-shot learning techniques while using only one-tenth of the model size. The source code of our proposed method will be available to the public upon the acceptance of the paper.
Fluoroformer: Scaling multiple instance learning to multiplexed images via attention-based channel fusion
Authors: Marc Harary, Eliezer M. Van Allen, William Lotter
Date: 2024-11-13 00:00:00
Tasks: Multiple Instance Learning, whole slide images

Though multiple instance learning (MIL) has been a foundational strategy in computational pathology for processing whole slide images (WSIs), current approaches are designed for traditional hematoxylin and eosin (H&E) slides rather than emerging multiplexed technologies. Here, we present an MIL strategy, the Fluoroformer module, that is specifically tailored to multiplexed WSIs by leveraging scaled dot-product attention (SDPA) to interpretably fuse information across disparate channels. On a cohort of 434 non-small cell lung cancer (NSCLC) samples, we show that the Fluoroformer both obtains strong prognostic performance and recapitulates immuno-oncological hallmarks of NSCLC. Our technique thereby provides a path for adapting state-of-the-art AI techniques to emerging spatial biology assays.
Confidence-aware Denoised Fine-tuning of Off-the-shelf Models for Certified Robustness
Authors: Suhyeok Jang, Seojin Kim, Jinwoo Shin, Jongheon Jeong
Date: 2024-11-13 00:00:00
Tasks: Adversarial Robustness, Denoising, Hallucination

The remarkable advances in deep learning have led to the emergence of many off-the-shelf classifiers, e.g., large pre-trained models. However, since they are typically trained on clean data, they remain vulnerable to adversarial attacks. Despite this vulnerability, their superior performance and transferability make off-the-shelf classifiers still valuable in practice, demanding further work to provide adversarial robustness for them in a post-hoc manner. A recently proposed method, denoised smoothing, leverages a denoiser model in front of the classifier to obtain provable robustness without additional training. However, the denoiser often creates hallucination, i.e., images that have lost the semantics of their originally assigned class, leading to a drop in robustness. Furthermore, its noise-and-denoise procedure introduces a significant distribution shift from the original distribution, causing the denoised smoothing framework to achieve sub-optimal robustness. In this paper, we introduce Fine-Tuning with Confidence-Aware Denoised Image Selection (FT-CADIS), a novel fine-tuning scheme to enhance the certified robustness of off-the-shelf classifiers. FT-CADIS is inspired by the observation that the confidence of off-the-shelf classifiers can effectively identify hallucinated images during denoised smoothing. Based on this, we develop a confidence-aware training objective to handle such hallucinated images and improve the stability of fine-tuning from denoised images. In this way, the classifier can be fine-tuned using only images that are beneficial for adversarial robustness. We also find that such a fine-tuning can be done by updating a small fraction of parameters of the classifier. Extensive experiments demonstrate that FT-CADIS has established the state-of-the-art certified robustness among denoised smoothing methods across all $\ell_2$-adversary radius in various benchmarks.
Retrieval of sun-induced plant fluorescence in the O$_2$-A absorption band from DESIS imagery
Authors: Jim Buffat, Miguel Pato, Kevin Alonso, Stefan Auer, Emiliano Carmona, Stefan Maier, Rupert Müller, Patrick Rademske, Uwe Rascher, Hanno Scharr
Date: 2024-11-12 00:00:00
Tasks: Retrieval

We provide the first method allowing to retrieve spaceborne SIF maps at 30 m ground resolution with a strong correlation ($r^2=0.6$) to high-quality airborne estimates of sun-induced fluorescence (SIF). SIF estimates can provide explanatory information for many tasks related to agricultural management and physiological studies. While SIF products from airborne platforms are accurate and spatially well resolved, the data acquisition of such products remains science-oriented and limited to temporally constrained campaigns. Spaceborne SIF products on the other hand are available globally with often sufficient revisit times. However, the spatial resolution of spaceborne SIF products is too small for agricultural applications. In view of ESA's upcoming FLEX mission we develop a method for SIF retrieval in the O$_2$-A band of hyperspectral DESIS imagery to provide first insights for spaceborne SIF retrieval at high spatial resolution. To this end, we train a simulation-based self-supervised network with a novel perturbation based regularizer and test performance improvements under additional supervised regularization of atmospheric variable prediction. In a validation study with corresponding HyPlant derived SIF estimates at 740 nm we find that our model reaches a mean absolute difference of 0.78 mW / nm / sr / m$^2$.
MagicQuill: An Intelligent Interactive Image Editing System
Authors: Zichen Liu, Yue Yu, Hao Ouyang, Qiuyu Wang, Ka Leong Cheng, Wen Wang, Zhiheng Liu, Qifeng Chen, Yujun Shen
Date: 2024-11-14 00:00:00
Proceeding: CVPR 2025 1
Tasks: Language Modeling, Language Modelling, Large Language Model, Multimodal Large Language Model

Image editing involves a variety of complex tasks and requires efficient and precise manipulation techniques. In this paper, we present MagicQuill, an integrated image editing system that enables swift actualization of creative ideas. Our system features a streamlined yet functionally robust interface, allowing for the articulation of editing operations (e.g., inserting elements, erasing objects, altering color) with minimal input. These interactions are monitored by a multimodal large language model (MLLM) to anticipate editing intentions in real time, bypassing the need for explicit prompt entry. Finally, we apply a powerful diffusion prior, enhanced by a carefully learned two-branch plug-in module, to process editing requests with precise control. Experimental results demonstrate the effectiveness of MagicQuill in achieving high-quality image edits. Please visit https://magic-quill.github.io to try out our system.
CropCraft: Inverse Procedural Modeling for 3D Reconstruction of Crop Plants
Authors: Albert J. Zhai, Xinlei Wang, Kaiyuan Li, Zhao Jiang, Junxiong Zhou, Sheng Wang, Zhenong Jin, Kaiyu Guan, Shenlong Wang
Date: 2024-11-14 00:00:00
Tasks: 3D Reconstruction, Bayesian Optimization

The ability to automatically build 3D digital twins of plants from images has countless applications in agriculture, environmental science, robotics, and other fields. However, current 3D reconstruction methods fail to recover complete shapes of plants due to heavy occlusion and complex geometries. In this work, we present a novel method for 3D reconstruction of agricultural crops based on optimizing a parametric model of plant morphology via inverse procedural modeling. Our method first estimates depth maps by fitting a neural radiance field and then employs Bayesian optimization to estimate plant morphological parameters that result in consistent depth renderings. The resulting 3D model is complete and biologically plausible. We validate our method on a dataset of real images of agricultural fields, and demonstrate that the reconstructions can be used for a variety of monitoring and simulation applications.
Advancing Fine-Grained Visual Understanding with Multi-Scale Alignment in Multi-Modal Models
Authors: Wei Wang, Zhaowei Li, Qi Xu, Linfeng Li, Yiqing Cai, Botian Jiang, Hang Song, Xingcan Hu, Pengyu Wang, Li Xiao
Date: 2024-11-14 00:00:00

Multi-modal large language models (MLLMs) have achieved remarkable success in fine-grained visual understanding across a range of tasks. However, they often encounter significant challenges due to inadequate alignment for fine-grained knowledge, which restricts their ability to accurately capture local details and attain a comprehensive global perception. While recent advancements have focused on aligning object expressions with grounding information, they typically lack explicit integration of object images, which contain affluent information beyond mere texts or coordinates. To bridge this gap, we introduce a novel fine-grained visual knowledge alignment method that effectively aligns and integrates multi-scale knowledge of objects, including texts, coordinates, and images. This innovative method is underpinned by our multi-scale fine-grained enhancement data synthesis pipeline, which provides over 300K essential training data to enhance alignment and improve overall performance. Furthermore, we present TinyGroundingGPT, a series of compact models optimized for high-level alignments. With a scale of approximately 3B parameters, TinyGroundingGPT achieves outstanding results in grounding tasks while delivering performance comparable to larger MLLMs in complex visual scenarios.
Assessing the Performance of the DINOv2 Self-supervised Learning Vision Transformer Model for the Segmentation of the Left Atrium from MRI Images
Authors: Bipasha Kundu, Bidur Khanal, Richard Simon, Cristian A. Linte
Date: 2024-11-14 00:00:00
Tasks: Anatomy, Few-Shot Learning, Image Segmentation, Medical Image Segmentation, Segmentation, Self-Supervised Learning, Semantic Segmentation, Transfer Learning

Accurate left atrium (LA) segmentation from pre-operative scans is crucial for diagnosing atrial fibrillation, treatment planning, and supporting surgical interventions. While deep learning models are key in medical image segmentation, they often require extensive manually annotated data. Foundation models trained on larger datasets have reduced this dependency, enhancing generalizability and robustness through transfer learning. We explore DINOv2, a self-supervised learning vision transformer trained on natural images, for LA segmentation using MRI. The challenges for LA's complex anatomy, thin boundaries, and limited annotated data make accurate segmentation difficult before & during the image-guided intervention. We demonstrate DINOv2's ability to provide accurate & consistent segmentation, achieving a mean Dice score of .871 & a Jaccard Index of .792 for end-to-end fine-tuning. Through few-shot learning across various data sizes & patient counts, DINOv2 consistently outperforms baseline models. These results suggest that DINOv2 effectively adapts to MRI with limited data, highlighting its potential as a competitive tool for segmentation & encouraging broader use in medical imaging.
Spider: Any-to-Many Multimodal LLM
Authors: Jinxiang Lai, Jie Zhang, Jun Liu, Jian Li, Xiaocheng Lu, Song Guo
Date: 2024-11-14 00:00:00
Tasks: multimodal interaction

Multimodal LLMs (MLLMs) have emerged as an extension of Large Language Models (LLMs), enabling the integration of various modalities. However, Any-to-Any MLLMs are limited to generating pairwise modalities 'Text + X' within a single response, such as Text + {Image or Audio or Video}. To address this limitation, we introduce Spider, a novel efficient Any-to-Many Modalities Generation (AMMG) framework, which can generate an arbitrary combination of modalities 'Text + Xs', such as Text + {Image and Audio and Video}. To achieve efficient AMMG, our Spider integrates three core components: a Base Model for basic X-to-X (i.e., Any-to-Any) modality processing, a novel Efficient Decoders-Controller for controlling multimodal Decoders to generate Xs (many-modal) contents, and an Any-to-Many Instruction Template designed for producing Xs signal prompts. To train Spider, we constructed a novel Text-formatted Many-Modal (TMM) dataset, which facilitates the learning of the X-to-Xs (i.e., Any-to-Many) capability necessary for AMMG. Ultimately, the well-trained Spider generates a pseudo X-to-Xs dataset, the first-ever X-to-Xs many-modal dataset, enhancing the potential for AMMG task in future research. Overall, this work not only pushes the boundary of multimodal interaction but also provides rich data support for advancing the field.
Dynamic Reconstruction of Hand-Object Interaction with Distributed Force-aware Contact Representation
Authors: Zhenjun Yu, Wenqiang Xu, Pengfei Xie, Yutong Li, Cewu Lu
Date: 2024-11-14 00:00:00
Tasks: Dynamic Reconstruction, Object, Object Reconstruction

We present ViTaM-D, a novel visual-tactile framework for dynamic hand-object interaction reconstruction, integrating distributed tactile sensing for more accurate contact modeling. While existing methods focus primarily on visual inputs, they struggle with capturing detailed contact interactions such as object deformation. Our approach leverages distributed tactile sensors to address this limitation by introducing DF-Field. This distributed force-aware contact representation models both kinetic and potential energy in hand-object interaction. ViTaM-D first reconstructs hand-object interactions using a visual-only network, VDT-Net, and then refines contact details through a force-aware optimization (FO) process, enhancing object deformation modeling. To benchmark our approach, we introduce the HOT dataset, which features 600 sequences of hand-object interactions, including deformable objects, built in a high-precision simulation environment. Extensive experiments on both the DexYCB and HOT datasets demonstrate significant improvements in accuracy over previous state-of-the-art methods such as gSDF and HOTrack. Our results highlight the superior performance of ViTaM-D in both rigid and deformable object reconstruction, as well as the effectiveness of DF-Field in refining hand poses. This work offers a comprehensive solution to dynamic hand-object interaction reconstruction by seamlessly integrating visual and tactile data. Codes, models, and datasets will be available.
VPBSD:Vessel-Pattern-Based Semi-Supervised Distillation for Efficient 3D Microscopic Cerebrovascular Segmentation
Authors: Xi Lin, Shixuan Zhao, Xinxu Wei, Amir Shmuel, YongJie Li
Date: 2024-11-14 00:00:00
Tasks: Brain Segmentation, Knowledge Distillation, Segmentation

3D microscopic cerebrovascular images are characterized by their high resolution, presenting significant annotation challenges, large data volumes, and intricate variations in detail. Together, these factors make achieving high-quality, efficient whole-brain segmentation particularly demanding. In this paper, we propose a novel Vessel-Pattern-Based Semi-Supervised Distillation pipeline (VpbSD) to address the challenges of 3D microscopic cerebrovascular segmentation. This pipeline initially constructs a vessel-pattern codebook that captures diverse vascular structures from unlabeled data during the teacher model's pretraining phase. In the knowledge distillation stage, the codebook facilitates the transfer of rich knowledge from a heterogeneous teacher model to a student model, while the semi-supervised approach further enhances the student model's exposure to diverse learning samples. Experimental results on real-world data, including comparisons with state-of-the-art methods and ablation studies, demonstrate that our pipeline and its individual components effectively address the challenges inherent in microscopic cerebrovascular segmentation.
Adaptive Deviation Learning for Visual Anomaly Detection with Data Contamination
Authors: Anindya Sundar Das, Guansong Pang, Monowar Bhuyan
Date: 2024-11-14 00:00:00
Tasks: Anomaly Detection

Visual anomaly detection targets to detect images that notably differ from normal pattern, and it has found extensive application in identifying defective parts within the manufacturing industry. These anomaly detection paradigms predominantly focus on training detection models using only clean, unlabeled normal samples, assuming an absence of contamination; a condition often unmet in real-world scenarios. The performance of these methods significantly depends on the quality of the data and usually decreases when exposed to noise. We introduce a systematic adaptive method that employs deviation learning to compute anomaly scores end-to-end while addressing data contamination by assigning relative importance to the weights of individual instances. In this approach, the anomaly scores for normal instances are designed to approximate scalar scores obtained from the known prior distribution. Meanwhile, anomaly scores for anomaly examples are adjusted to exhibit statistically significant deviations from these reference scores. Our approach incorporates a constrained optimization problem within the deviation learning framework to update instance weights, resolving this problem for each mini-batch. Comprehensive experiments on the MVTec and VisA benchmark datasets indicate that our proposed method surpasses competing techniques and exhibits both stability and robustness in the presence of data contamination.
Image Processing for Motion Magnification
Authors: Nadaniela Egidi, Josephin Giacomini, Paolo Leonesi, Pierluigi Maponi, Federico Mearelli, Edin Trebovic
Date: 2024-11-14 00:00:00
Tasks: Motion Magnification, Object

Motion Magnification (MM) is a collection of relative recent techniques within the realm of Image Processing. The main motivation of introducing these techniques in to support the human visual system to capture relevant displacements of an object of interest; these motions can be in object color and in object location. In fact, the goal is to opportunely process a video sequence to obtain as output a new video in which motions are magnified and visible to the viewer. We propose a numerical technique using the Phase-Based Motion Magnification which analyses the video sequence in the Fourier Domain and rely on the Fourier Shifting Property. We describe the mathematical foundation of this method and the corresponding implementation in a numerical algorithm. We present preliminary experiments, focusing on some basic test made up using synthetic images.
OOD-SEG: Out-Of-Distribution detection for image SEGmentation with sparse multi-class positive-only annotations
Authors: Junwen Wang, Zhonghao Wang, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
Date: 2024-11-14 00:00:00
Tasks: Image Segmentation, Medical Image Segmentation, Out-of-Distribution Detection, Segmentation, Semantic Segmentation

Despite significant advancements, segmentation based on deep neural networks in medical and surgical imaging faces several challenges, two of which we aim to address in this work. First, acquiring complete pixel-level segmentation labels for medical images is time-consuming and requires domain expertise. Second, typical segmentation pipelines cannot detect out-of-distribution (OOD) pixels, leaving them prone to spurious outputs during deployment. In this work, we propose a novel segmentation approach exploiting OOD detection that learns only from sparsely annotated pixels from multiple positive-only classes. These multi-class positive annotations naturally fall within the in-distribution (ID) set. Unlabelled pixels may contain positive classes but also negative ones, including what is typically referred to as \emph{background} in standard segmentation formulations. Here, we forgo the need for background annotation and consider these together with any other unseen classes as part of the OOD set. Our framework can integrate, at a pixel-level, any OOD detection approaches designed for classification tasks. To address the lack of existing OOD datasets and established evaluation metric for medical image segmentation, we propose a cross-validation strategy that treats held-out labelled classes as OOD. Extensive experiments on both multi-class hyperspectral and RGB surgical imaging datasets demonstrate the robustness and generalisation capability of our proposed framework.