pwc-archive/papers-with-abstracts huggingface dataset:
MOSAIC: A Multi-View 2.5D Organ Slice Selector with Cross-Attentional Reasoning for Anatomically-Aware CT Localization in Medical Organ Segmentation
Authors: Hania Ghouse, Muzammil Behzad
Date: 2025-05-15 00:00:00
Tasks: Medical Image Analysis, Organ Segmentation, Segmentation

Efficient and accurate multi-organ segmentation from abdominal CT volumes is a fundamental challenge in medical image analysis. Existing 3D segmentation approaches are computationally and memory intensive, often processing entire volumes that contain many anatomically irrelevant slices. Meanwhile, 2D methods suffer from class imbalance and lack cross-view contextual awareness. To address these limitations, we propose a novel, anatomically-aware slice selector pipeline that reduces input volume prior to segmentation. Our unified framework introduces a vision-language model (VLM) for cross-view organ presence detection using fused tri-slice (2.5D) representations from axial, sagittal, and coronal planes. Our proposed model acts as an "expert" in anatomical localization, reasoning over multi-view representations to selectively retain slices with high structural relevance. This enables spatially consistent filtering across orientations while preserving contextual cues. More importantly, since standard segmentation metrics such as Dice or IoU fail to measure the spatial precision of such slice selection, we introduce a novel metric, Slice Localization Concordance (SLC), which jointly captures anatomical coverage and spatial alignment with organ-centric reference slices. Unlike segmentation-specific metrics, SLC provides a model-agnostic evaluation of localization fidelity. Our model offers substantial improvement gains against several baselines across all organs, demonstrating both accurate and reliable organ-focused slice filtering. These results show that our method enables efficient and spatially consistent organ filtering, thereby significantly reducing downstream segmentation cost while maintaining high anatomical fidelity.
ROIsGAN: A Region Guided Generative Adversarial Framework for Murine Hippocampal Subregion Segmentation
Authors: Sayed Mehedi Azim, Brian Corbett, Iman Dehzangi
Date: 2025-05-15 00:00:00
Tasks: Generative Adversarial Network, Hippocampus, Segmentation

The hippocampus, a critical brain structure involved in memory processing and various neurodegenerative and psychiatric disorders, comprises three key subregions: the dentate gyrus (DG), Cornu Ammonis 1 (CA1), and Cornu Ammonis 3 (CA3). Accurate segmentation of these subregions from histological tissue images is essential for advancing our understanding of disease mechanisms, developmental dynamics, and therapeutic interventions. However, no existing methods address the automated segmentation of hippocampal subregions from tissue images, particularly from immunohistochemistry (IHC) images. To bridge this gap, we introduce a novel set of four comprehensive murine hippocampal IHC datasets featuring distinct staining modalities: cFos, NeuN, and multiplexed stains combining cFos, NeuN, and either {\Delta}FosB or GAD67, capturing structural, neuronal activity, and plasticity associated information. Additionally, we propose ROIsGAN, a region-guided U-Net-based generative adversarial network tailored for hippocampal subregion segmentation. By leveraging adversarial learning, ROIsGAN enhances boundary delineation and structural detail refinement through a novel region-guided discriminator loss combining Dice and binary cross-entropy loss. Evaluated across DG, CA1, and CA3 subregions, ROIsGAN consistently outperforms conventional segmentation models, achieving performance gains ranging from 1-10% in Dice score and up to 11% in Intersection over Union (IoU), particularly under challenging staining conditions. Our work establishes foundational datasets and methods for automated hippocampal segmentation, enabling scalable, high-precision analysis of tissue images in neuroscience research. Our generated datasets, proposed model as a standalone tool, and its corresponding source code are publicly available at: https://github.com/MehediAzim/ROIsGAN
A probabilistic framework for dynamic quantization
Authors: Gabriele Santini, Francesco Paissan, Elisabetta Farella
Date: 2025-05-15 00:00:00
Tasks: Quantization

We propose a probabilistic framework for dynamic quantization of neural networks that allows for a computationally efficient input-adaptive rescaling of the quantization parameters. Our framework applies a probabilistic model to the network's pre-activations through a lightweight surrogate, enabling the adaptive adjustment of the quantization parameters on a per-input basis without significant memory overhead. We validate our approach on a set of popular computer vision tasks and models, observing only a negligible loss in performance. Our method strikes the best performance and computational overhead tradeoff compared to standard quantization strategies.
Predicting Risk of Pulmonary Fibrosis Formation in PASC Patients
Authors: Wanying Dou, Gorkem Durak, Koushik Biswas, Ziliang Hong, Andrea Mia Bejar, Elif Keles, Kaan Akin, Sukru Mehmet Erturk, Alpay Medetalibeyoglu, Marc Sala, Alexander Misharin, Hatice Savas, Mary Salvatore, Sachin Jambawalikar, Drew Torigian, Jayaram K. Udupa, Ulas Bagci
Date: 2025-05-15 00:00:00

While the acute phase of the COVID-19 pandemic has subsided, its long-term effects persist through Post-Acute Sequelae of COVID-19 (PASC), commonly known as Long COVID. There remains substantial uncertainty regarding both its duration and optimal management strategies. PASC manifests as a diverse array of persistent or newly emerging symptoms--ranging from fatigue, dyspnea, and neurologic impairments (e.g., brain fog), to cardiovascular, pulmonary, and musculoskeletal abnormalities--that extend beyond the acute infection phase. This heterogeneous presentation poses substantial challenges for clinical assessment, diagnosis, and treatment planning. In this paper, we focus on imaging findings that may suggest fibrotic damage in the lungs, a critical manifestation characterized by scarring of lung tissue, which can potentially affect long-term respiratory function in patients with PASC. This study introduces a novel multi-center chest CT analysis framework that combines deep learning and radiomics for fibrosis prediction. Our approach leverages convolutional neural networks (CNNs) and interpretable feature extraction, achieving 82.2% accuracy and 85.5% AUC in classification tasks. We demonstrate the effectiveness of Grad-CAM visualization and radiomics-based feature analysis in providing clinically relevant insights for PASC-related lung fibrosis prediction. Our findings highlight the potential of deep learning-driven computational methods for early detection and risk assessment of PASC-related lung fibrosis--presented for the first time in the literature.
TartanGround: A Large-Scale Dataset for Ground Robot Perception and Navigation
Authors: Manthan Patel, Fan Yang, Yuheng Qiu, Cesar Cadena, Sebastian Scherer, Marco Hutter, Wenshan Wang
Date: 2025-05-15 00:00:00
Tasks: Optical Flow Estimation

We present TartanGround, a large-scale, multi-modal dataset to advance the perception and autonomy of ground robots operating in diverse environments. This dataset, collected in various photorealistic simulation environments includes multiple RGB stereo cameras for 360-degree coverage, along with depth, optical flow, stereo disparity, LiDAR point clouds, ground truth poses, semantic segmented images, and occupancy maps with semantic labels. Data is collected using an integrated automatic pipeline, which generates trajectories mimicking the motion patterns of various ground robot platforms, including wheeled and legged robots. We collect 910 trajectories across 70 environments, resulting in 1.5 million samples. Evaluations on occupancy prediction and SLAM tasks reveal that state-of-the-art methods trained on existing datasets struggle to generalize across diverse scenes. TartanGround can serve as a testbed for training and evaluation of a broad range of learning-based tasks, including occupancy prediction, SLAM, neural scene representation, perception-based navigation, and more, enabling advancements in robotic perception and autonomy towards achieving robust models generalizable to more diverse scenarios. The dataset and codebase for data collection will be made publicly available upon acceptance. Webpage: https://tartanair.org/tartanground
Adaptive Spatial Transcriptomics Interpolation via Cross-modal Cross-slice Modeling
Authors: NingFeng Que, Xiaofei Wang, Jingjing Chen, Yixuan Jiang, Chao Li
Date: 2025-05-15 00:00:00
Tasks: cross-modal alignment

Spatial transcriptomics (ST) is a promising technique that characterizes the spatial gene profiling patterns within the tissue context. Comprehensive ST analysis depends on consecutive slices for 3D spatial insights, whereas the missing intermediate tissue sections and high costs limit the practical feasibility of generating multi-slice ST. In this paper, we propose C2-STi, the first attempt for interpolating missing ST slices at arbitrary intermediate positions between adjacent ST slices. Despite intuitive, effective ST interpolation presents significant challenges, including 1) limited continuity across heterogeneous tissue sections, 2) complex intrinsic correlation across genes, and 3) intricate cellular structures and biological semantics within each tissue section. To mitigate these challenges, in C2-STi, we design 1) a distance-aware local structural modulation module to adaptively capture cross-slice deformations and enhance positional correlations between ST slices, 2) a pyramid gene co-expression correlation module to capture multi-scale biological associations among genes, and 3) a cross-modal alignment module that integrates the ST-paired hematoxylin and eosin (H&E)-stained images to filter and align the essential cellular features across ST and H\&E images. Extensive experiments on the public dataset demonstrate our superiority over state-of-the-art approaches on both single-slice and multi-slice ST interpolation. Codes are available at https://github.com/XiaofeiWang2018/C2-STi.
Textured mesh Quality Assessment using Geometry and Color Field Similarity
Authors: Kaifa Yang, Qi Yang, Zhu Li, Yiling Xu
Date: 2025-05-16 00:00:00
Tasks: 3D geometry

Textured mesh quality assessment (TMQA) is critical for various 3D mesh applications. However, existing TMQA methods often struggle to provide accurate and robust evaluations. Motivated by the effectiveness of fields in representing both 3D geometry and color information, we propose a novel point-based TMQA method called field mesh quality metric (FMQM). FMQM utilizes signed distance fields and a newly proposed color field named nearest surface point color field to realize effective mesh feature description. Four features related to visual perception are extracted from the geometry and color fields: geometry similarity, geometry gradient similarity, space color distribution similarity, and space color gradient similarity. Experimental results on three benchmark datasets demonstrate that FMQM outperforms state-of-the-art (SOTA) TMQA metrics. Furthermore, FMQM exhibits low computational complexity, making it a practical and efficient solution for real-world applications in 3D graphics and visualization. Our code is publicly available at: https://github.com/yyyykf/FMQM.
Multimodal Event Detection: Current Approaches and Defining the New Playground through LLMs and VLMs
Authors: Abhishek Dey, Aabha Bothera, Samhita Sarikonda, Rishav Aryan, Sanjay Kumar Podishetty, Akshay Havalgi, Gaurav Singh, Saurabh Srivastava
Date: 2025-05-16 00:00:00
Tasks: Event Detection

In this paper, we study the challenges of detecting events on social media, where traditional unimodal systems struggle due to the rapid and multimodal nature of data dissemination. We employ a range of models, including unimodal ModernBERT and ConvNeXt-V2, multimodal fusion techniques, and advanced generative models like GPT-4o, and LLaVA. Additionally, we also study the effect of providing multimodal generative models (such as GPT-4o) with a single modality to assess their efficacy. Our results indicate that while multimodal approaches notably outperform unimodal counterparts, generative approaches despite having a large number of parameters, lag behind supervised methods in precision. Furthermore, we also found that they lag behind instruction-tuned models because of their inability to generate event classes correctly. During our error analysis, we discovered that common social media issues such as leet speak, text elongation, etc. are effectively handled by generative approaches but are hard to tackle using supervised approaches.
Pretrained hybrid transformer for generalizable cardiac substructures segmentation from contrast and non-contrast CTs in lung and breast cancers
Authors: Aneesh Rangnekar, Nikhil Mankuzhy, Jonas Willmann, Chloe Choi, Abraham Wu, Maria Thor, Andreas Rimner, Harini Veeraraghavan
Date: 2025-05-16 00:00:00
Tasks: Position

AI automated segmentations for radiation treatment planning (RTP) can deteriorate when applied in clinical cases with different characteristics than training dataset. Hence, we refined a pretrained transformer into a hybrid transformer convolutional network (HTN) to segment cardiac substructures lung and breast cancer patients acquired with varying imaging contrasts and patient scan positions. Cohort I, consisting of 56 contrast-enhanced (CECT) and 124 non-contrast CT (NCCT) scans from patients with non-small cell lung cancers acquired in supine position, was used to create oracle with all 180 training cases and balanced (CECT: 32, NCCT: 32 training) HTN models. Models were evaluated on a held-out validation set of 60 cohort I patients and 66 patients with breast cancer from cohort II acquired in supine (n=45) and prone (n=21) positions. Accuracy was measured using DSC, HD95, and dose metrics. Publicly available TotalSegmentator served as the benchmark. The oracle and balanced models were similarly accurate (DSC Cohort I: 0.80 \pm 0.10 versus 0.81 \pm 0.10; Cohort II: 0.77 \pm 0.13 versus 0.80 \pm 0.12), outperforming TotalSegmentator. The balanced model, using half the training cases as oracle, produced similar dose metrics as manual delineations for all cardiac substructures. This model was robust to CT contrast in 6 out of 8 substructures and patient scan position variations in 5 out of 8 substructures and showed low correlations of accuracy to patient size and age. A HTN demonstrated robustly accurate (geometric and dose metrics) cardiac substructures segmentation from CTs with varying imaging and patient characteristics, one key requirement for clinical use. Moreover, the model combining pretraining with balanced distribution of NCCT and CECT scans was able to provide reliably accurate segmentations under varied conditions with far fewer labeled datasets compared to an oracle model.
MultiLink: Multi-class Structure Recovery via Agglomerative Clustering and Model Selection
Authors: Luca Magri, Filippo Leveni, Giacomo Boracchi
Date: 2025-05-16 00:00:00
Proceeding: CVPR 2021 1
Tasks: Model Selection

We address the problem of recovering multiple structures of different classes in a dataset contaminated by noise and outliers. In particular, we consider geometric structures defined by a mixture of underlying parametric models (e.g. planes and cylinders, homographies and fundamental matrices), and we tackle the robust fitting problem by preference analysis and clustering. We present a new algorithm, termed MultiLink, that simultaneously deals with multiple classes of models. MultiLink combines on-the-fly model fitting and model selection in a novel linkage scheme that determines whether two clusters are to be merged. The resulting method features many practical advantages with respect to methods based on preference analysis, being faster, less sensitive to the inlier threshold, and able to compensate limitations deriving from hypotheses sampling. Experiments on several public datasets demonstrate that Multi-Link favourably compares with state of the art alternatives, both in multi-class and single-class problems. Code is publicly made available for download.
CTP: A hybrid CNN-Transformer-PINN model for ocean front forecasting
Authors: Yishuo Wang, Feng Zhou, Muping Zhou, Qicheng Meng, Zhijun Hu, Yi Wang
Date: 2025-05-16 00:00:00

This paper proposes CTP, a novel deep learning framework that integrates convolutional neural network(CNN), Transformer architectures, and physics-informed neural network(PINN) for ocean front prediction. Ocean fronts, as dynamic interfaces between distinct water masses, play critical roles in marine biogeochemical and physical processes. Existing methods such as LSTM, ConvLSTM, and AttentionConv often struggle to maintain spatial continuity and physical consistency over multi-step forecasts. CTP addresses these challenges by combining localized spatial encoding, long-range temporal attention, and physical constraint enforcement. Experimental results across south China sea(SCS) and Kuroshio(KUR) regions from 1993 to 2020 demonstrate that CTP achieves state-of-the-art(SOTA) performance in both single-step and multi-step predictions, significantly outperforming baseline models in accuracy, $F_1$ score, and temporal stability.
GrowSplat: Constructing Temporal Digital Twins of Plants with Gaussian Splats
Authors: Simeon Adebola, Shuangyu Xie, Chung Min Kim, Justin Kerr, Bart M. van Marrewijk, Mieke van Vlaardingen, Tim van Daalen, E. N. van Loo, Jose Luis Susa Rincon, Eugen Solowjow, Rick van de Zedde, Ken Goldberg
Date: 2025-05-16 00:00:00
Tasks: Plant Phenotyping

Accurate temporal reconstructions of plant growth are essential for plant phenotyping and breeding, yet remain challenging due to complex geometries, occlusions, and non-rigid deformations of plants. We present a novel framework for building temporal digital twins of plants by combining 3D Gaussian Splatting with a robust sample alignment pipeline. Our method begins by reconstructing Gaussian Splats from multi-view camera data, then leverages a two-stage registration approach: coarse alignment through feature-based matching and Fast Global Registration, followed by fine alignment with Iterative Closest Point. This pipeline yields a consistent 4D model of plant development in discrete time steps. We evaluate the approach on data from the Netherlands Plant Eco-phenotyping Center, demonstrating detailed temporal reconstructions of Sequoia and Quinoa species. Videos and Images can be seen at https://berkeleyautomation.github.io/GrowSplat/
A Survey on the Safety and Security Threats of Computer-Using Agents: JARVIS or Ultron?
Authors: Ada Chen, Yongjiang Wu, Junyuan Zhang, Jingyu Xiao, Shu Yang, Jen-tse Huang, Kun Wang, Wenxuan Wang, Shuai Wang
Date: 2025-05-16 00:00:00

Recently, AI-driven interactions with computing devices have advanced from basic prototype tools to sophisticated, LLM-based systems that emulate human-like operations in graphical user interfaces. We are now witnessing the emergence of \emph{Computer-Using Agents} (CUAs), capable of autonomously performing tasks such as navigating desktop applications, web pages, and mobile apps. However, as these agents grow in capability, they also introduce novel safety and security risks. Vulnerabilities in LLM-driven reasoning, with the added complexity of integrating multiple software components and multimodal inputs, further complicate the security landscape. In this paper, we present a systematization of knowledge on the safety and security threats of CUAs. We conduct a comprehensive literature review and distill our findings along four research objectives: \textit{\textbf{(i)}} define the CUA that suits safety analysis; \textit{\textbf{(ii)} } categorize current safety threats among CUAs; \textit{\textbf{(iii)}} propose a comprehensive taxonomy of existing defensive strategies; \textit{\textbf{(iv)}} summarize prevailing benchmarks, datasets, and evaluation metrics used to assess the safety and performance of CUAs. Building on these insights, our work provides future researchers with a structured foundation for exploring unexplored vulnerabilities and offers practitioners actionable guidance in designing and deploying secure Computer-Using Agents.
Generative Models in Computational Pathology: A Comprehensive Survey on Methods, Applications, and Challenges
Authors: Yuan Zhang, Xinfeng Zhang, Xiaoming Qi Xinyu Wu, Feng Chen, Guanyu Yang, Huazhu Fu
Date: 2025-05-16 00:00:00
Tasks: Data Augmentation, Diagnostic, Image Generation, Text Generation, whole slide images

Generative modeling has emerged as a promising direction in computational pathology, offering capabilities such as data-efficient learning, synthetic data augmentation, and multimodal representation across diverse diagnostic tasks. This review provides a comprehensive synthesis of recent progress in the field, organized into four key domains: image generation, text generation, multimodal image-text generation, and other generative applications, including spatial simulation and molecular inference. By analyzing over 150 representative studies, we trace the evolution of generative architectures from early generative adversarial networks to recent advances in diffusion models and foundation models with generative capabilities. We further examine the datasets and evaluation protocols commonly used in this domain and highlight ongoing limitations, including challenges in generating high-fidelity whole slide images, clinical interpretability, and concerns related to the ethical and legal implications of synthetic data. The review concludes with a discussion of open challenges and prospective research directions, with an emphasis on developing unified, multimodal, and clinically deployable generative systems. This work aims to provide a foundational reference for researchers and practitioners developing and applying generative models in computational pathology.
DexGarmentLab: Dexterous Garment Manipulation Environment with Generalizable Policy
Authors: Yuran Wang, Ruihai Wu, Yue Chen, Jiarui Wang, Jiaqi Liang, Ziyu Zhu, Haoran Geng, Jitendra Malik, Pieter Abbeel, Hao Dong
Date: 2025-05-16 00:00:00
Tasks: Reinforcement Learning (RL)

Garment manipulation is a critical challenge due to the diversity in garment categories, geometries, and deformations. Despite this, humans can effortlessly handle garments, thanks to the dexterity of our hands. However, existing research in the field has struggled to replicate this level of dexterity, primarily hindered by the lack of realistic simulations of dexterous garment manipulation. Therefore, we propose DexGarmentLab, the first environment specifically designed for dexterous (especially bimanual) garment manipulation, which features large-scale high-quality 3D assets for 15 task scenarios, and refines simulation techniques tailored for garment modeling to reduce the sim-to-real gap. Previous data collection typically relies on teleoperation or training expert reinforcement learning (RL) policies, which are labor-intensive and inefficient. In this paper, we leverage garment structural correspondence to automatically generate a dataset with diverse trajectories using only a single expert demonstration, significantly reducing manual intervention. However, even extensive demonstrations cannot cover the infinite states of garments, which necessitates the exploration of new algorithms. To improve generalization across diverse garment shapes and deformations, we propose a Hierarchical gArment-manipuLation pOlicy (HALO). It first identifies transferable affordance points to accurately locate the manipulation area, then generates generalizable trajectories to complete the task. Through extensive experiments and detailed analysis of our method and baseline, we demonstrate that HALO consistently outperforms existing methods, successfully generalizing to previously unseen instances even with significant variations in shape and deformation where others fail. Our project page is available at: https://wayrise.github.io/DexGarmentLab/.