pwc-archive/papers-with-abstracts huggingface dataset:
Calculation of Femur Caput Collum Diaphyseal angle for X-Rays images using Semantic Segmentation
Authors: Muhammad Abdullah, Anne Querfurth, Deepak Bhatia, Mahdi Mantash
Date: 2024-04-25 00:00:00
Tasks: Deep Learning, Semantic Segmentation

This paper investigates the use of deep learning approaches to estimate the femur caput-collum-diaphyseal (CCD) angle from X-ray images. The CCD angle is an important measurement in the diagnosis of hip problems, and correct prediction can help in the planning of surgical procedures. Manual measurement of this angle, on the other hand, can be time-intensive and vulnerable to inter-observer variability. In this paper, we present a deep-learning algorithm that can reliably estimate the femur CCD angle from X-ray images. To train and test the performance of our model, we employed an X-ray image dataset with associated femur CCD angle measurements. Furthermore, we built a prototype to display the resulting predictions and to allow the user to interact with the predictions. As this is happening in a sterile setting during surgery, we expanded our interface to the possibility of being used only by voice commands. Our results show that our deep learning model predicts the femur CCD angle on X-ray images with great accuracy, with a mean absolute error of 4.3 degrees on the left femur and 4.9 degrees on the right femur on the test dataset. Our results suggest that deep learning has the potential to give a more efficient and accurate technique for predicting the femur CCD angle, which might have substantial therapeutic implications for the diagnosis and management of hip problems.
Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques
Authors: Ziliang Hong, Debesh Jha, Koushik Biswas, Zheyuan Zhang, Yury Velichko, Cemal Yazici, Temel Tirkes, Amir Borhani, Baris Turkbey, Alpay Medetalibeyoglu, Gorkem Durak, Ulas Bagci
Date: 2024-04-25 00:00:00
Tasks: Deep Learning, Diagnostic, Pancreas Segmentation, Prognosis

Identifying peri-pancreatic edema is a pivotal indicator for identifying disease progression and prognosis, emphasizing the critical need for accurate detection and assessment in pancreatitis diagnosis and management. This study \textit{introduces a novel CT dataset sourced from 255 patients with pancreatic diseases, featuring annotated pancreas segmentation masks and corresponding diagnostic labels for peri-pancreatic edema condition}. With the novel dataset, we first evaluate the efficacy of the \textit{LinTransUNet} model, a linear Transformer based segmentation algorithm, to segment the pancreas accurately from CT imaging data. Then, we use segmented pancreas regions with two distinctive machine learning classifiers to identify existence of peri-pancreatic edema: deep learning-based models and a radiomics-based eXtreme Gradient Boosting (XGBoost). The LinTransUNet achieved promising results, with a dice coefficient of 80.85\%, and mIoU of 68.73\%. Among the nine benchmarked classification models for peri-pancreatic edema detection, \textit{Swin-Tiny} transformer model demonstrated the highest recall of $98.85 \pm 0.42$ and precision of $98.38\pm 0.17$. Comparatively, the radiomics-based XGBoost model achieved an accuracy of $79.61\pm4.04$ and recall of $91.05\pm3.28$, showcasing its potential as a supplementary diagnostic tool given its rapid processing speed and reduced training time. Our code is available \url{https://github.com/NUBagciLab/Peri-Pancreatic-Edema-Detection}.
WheelPose: Data Synthesis Techniques to Improve Pose Estimation Performance on Wheelchair Users
Authors: William Huang, Sam Ghahremani, Siyou Pei, Yang Zhang
Date: 2024-04-25 00:00:00
Tasks: Diversity, Human Detection, Motion Generation, Pose Estimation, Unity

Existing pose estimation models perform poorly on wheelchair users due to a lack of representation in training data. We present a data synthesis pipeline to address this disparity in data collection and subsequently improve pose estimation performance for wheelchair users. Our configurable pipeline generates synthetic data of wheelchair users using motion capture data and motion generation outputs simulated in the Unity game engine. We validated our pipeline by conducting a human evaluation, investigating perceived realism, diversity, and an AI performance evaluation on a set of synthetic datasets from our pipeline that synthesized different backgrounds, models, and postures. We found our generated datasets were perceived as realistic by human evaluators, had more diversity than existing image datasets, and had improved person detection and pose estimation performance when fine-tuned on existing pose estimation models. Through this work, we hope to create a foothold for future efforts in tackling the inclusiveness of AI in a data-centric and human-centric manner with the data synthesis techniques demonstrated in this work. Finally, for future works to extend upon, we open source all code in this research and provide a fully configurable Unity Environment used to generate our datasets. In the case of any models we are unable to share due to redistribution and licensing policies, we provide detailed instructions on how to source and replace said models.
Nuclei-Location Based Point Set Registration of Multi-Stained Whole Slide Images
Authors: Adith Jeyasangar, Abdullah Alsalemi, Shan E Ahmed Raza
Date: 2024-04-25 00:00:00
Tasks: whole slide images

Whole Slide Images (WSIs) provide exceptional detail for studying tissue architecture at the cell level. To study tumour microenvironment (TME) with the context of various protein biomarkers and cell sub-types, analysis and registration of features using multi-stained WSIs is often required. Multi-stained WSI pairs normally suffer from rigid and non-rigid deformities in addition to slide artefacts and control tissue which present challenges at precise registration. Traditional registration methods mainly focus on global rigid/non-rigid registration but struggle with aligning slides with complex tissue deformations at the nuclei level. However, nuclei level non-rigid registration is essential for downstream tasks such as cell sub-type analysis in the context of protein biomarker signatures. This paper focuses on local level non-rigid registration using a nuclei-location based point set registration approach for aligning multi-stained WSIs. We exploit the spatial distribution of nuclei that is prominent and consistent (to a large level) across different stains to establish a spatial correspondence. We evaluate our approach using the HYRECO dataset consisting of 54 re-stained images of H\&E and PHH3 image pairs. The approach can be extended to other IHC and IF stained WSIs considering a good nuclei detection algorithm is accessible. The performance of the model is tested against established registration algorithms and is shown to outperform the model for nuclei level registration.
Auto-Generating Weak Labels for Real & Synthetic Data to Improve Label-Scarce Medical Image Segmentation
Authors: Tanvi Deshpande, Eva Prakash, Elsie Gyang Ross, Curtis Langlotz, Andrew Ng, Jeya Maria Jose Valanarasu
Date: 2024-04-25 00:00:00
Tasks: Image Segmentation, Medical Image Segmentation, Semantic Segmentation

The high cost of creating pixel-by-pixel gold-standard labels, limited expert availability, and presence of diverse tasks make it challenging to generate segmentation labels to train deep learning models for medical imaging tasks. In this work, we present a new approach to overcome the hurdle of costly medical image labeling by leveraging foundation models like Segment Anything Model (SAM) and its medical alternate MedSAM. Our pipeline has the ability to generate weak labels for any unlabeled medical image and subsequently use it to augment label-scarce datasets. We perform this by leveraging a model trained on a few gold-standard labels and using it to intelligently prompt MedSAM for weak label generation. This automation eliminates the manual prompting step in MedSAM, creating a streamlined process for generating labels for both real and synthetic images, regardless of quantity. We conduct experiments on label-scarce settings for multiple tasks pertaining to modalities ranging from ultrasound, dermatology, and X-rays to demonstrate the usefulness of our pipeline. The code is available at https://github.com/stanfordmlgroup/Auto-Generate-WLs/.
Motor Focus: Fast Ego-Motion Prediction for Assistive Visual Navigation
Authors: Hao Wang, Jiayou Qin, Xiwen Chen, Ashish Bastola, John Suchanek, Zihao Gong, Abolfazl Razi
Date: 2024-04-25 00:00:00
Tasks: Camera Calibration, Motion Compensation, motion prediction, object-detection, Object Detection, Optical Flow Estimation, Visual Navigation

Assistive visual navigation systems for visually impaired individuals have become increasingly popular thanks to the rise of mobile computing. Most of these devices work by translating visual information into voice commands. In complex scenarios where multiple objects are present, it is imperative to prioritize object detection and provide immediate notifications for key entities in specific directions. This brings the need for identifying the observer's motion direction (ego-motion) by merely processing visual information, which is the key contribution of this paper. Specifically, we introduce Motor Focus, a lightweight image-based framework that predicts the ego-motion - the humans (and humanoid machines) movement intentions based on their visual feeds, while filtering out camera motion without any camera calibration. To this end, we implement an optical flow-based pixel-wise temporal analysis method to compensate for the camera motion with a Gaussian aggregation to smooth out the movement prediction area. Subsequently, to evaluate the performance, we collect a dataset including 50 clips of pedestrian scenes in 5 different scenarios. We tested this framework with classical feature detectors such as SIFT and ORB to show the comparison. Our framework demonstrates its superiority in speed (> 40FPS), accuracy (MAE = 60pixels), and robustness (SNR = 23dB), confirming its potential to enhance the usability of vision-based assistive navigation tools in complex environments.
Dr-SAM: An End-to-End Framework for Vascular Segmentation, Diameter Estimation, and Anomaly Detection on Angiography Images
Authors: Vazgen Zohranyan, Vagner Navasardyan, Hayk Navasardyan, Jan Borggrefe, Shant Navasardyan
Date: 2024-04-25 00:00:00
Tasks: Anomaly Detection, Diagnostic

Recent advancements in AI have significantly transformed medical imaging, particularly in angiography, by enhancing diagnostic precision and patient care. However existing works are limited in analyzing the aorta and iliac arteries, above all for vascular anomaly detection and characterization. To close this gap, we propose Dr-SAM, a comprehensive multi-stage framework for vessel segmentation, diameter estimation, and anomaly analysis aiming to examine the peripheral vessels through angiography images. For segmentation we introduce a customized positive/negative point selection mechanism applied on top of the Segment Anything Model (SAM), specifically for medical (Angiography) images. Then we propose a morphological approach to determine the vessel diameters followed by our histogram-driven anomaly detection approach. Moreover, we introduce a new benchmark dataset for the comprehensive analysis of peripheral vessel angiography images which we hope can boost the upcoming research in this direction leading to enhanced diagnostic precision and ultimately better health outcomes for individuals facing vascular issues.
PLLaVA : Parameter-free LLaVA Extension from Images to Videos for Video Dense Captioning
Authors: Lin Xu, Yilin Zhao, Daquan Zhou, Zhijie Lin, See Kiong Ng, Jiashi Feng
Date: 2024-04-25 00:00:00
Proceeding: arXiv 2024 4
Tasks: Dense Captioning, MVBench, Video-based Generative Performance Benchmarking, Video-based Generative Performance Benchmarking (Consistency), Video-based Generative Performance Benchmarking (Contextual Understanding), Video-based Generative Performance Benchmarking (Correctness of Information), Video-based Generative Performance Benchmarking (Detail Orientation)), Video-based Generative Performance Benchmarking (Temporal Understanding), Video Question Answering, Video Understanding, Zero-Shot Video Question Answer

Vision-language pre-training has significantly elevated performance across a wide range of image-language applications. Yet, the pre-training process for video-related tasks demands exceptionally large computational and data resources, which hinders the progress of video-language models. This paper investigates a straight-forward, highly efficient, and resource-light approach to adapting an existing image-language pre-trained model for dense video understanding. Our preliminary experiments reveal that directly fine-tuning pre-trained image-language models with multiple frames as inputs on video datasets leads to performance saturation or even a drop. Our further investigation reveals that it is largely attributed to the bias of learned high-norm visual features. Motivated by this finding, we propose a simple but effective pooling strategy to smooth the feature distribution along the temporal dimension and thus reduce the dominant impacts from the extreme features. The new model is termed Pooling LLaVA, or PLLaVA in short. PLLaVA achieves new state-of-the-art performance on modern benchmark datasets for both video question-answer and captioning tasks. Notably, on the recent popular VideoChatGPT benchmark, PLLaVA achieves a score of 3.48 out of 5 on average of five evaluated dimensions, exceeding the previous SOTA results from GPT4V (IG-VLM) by 9%. On the latest multi-choice benchmark MVBench, PLLaVA achieves 58.1% accuracy on average across 20 sub-tasks, 14.5% higher than GPT4V (IG-VLM). Code is available at https://pllava.github.io/
CriSp: Leveraging Tread Depth Maps for Enhanced Crime-Scene Shoeprint Matching
Authors: Samia Shafique, Shu Kong, Charless Fowlkes
Date: 2024-04-25 00:00:00
Tasks: Benchmarking, Data Augmentation, Image Retrieval, Retrieval

Shoeprints are a common type of evidence found at crime scenes and are used regularly in forensic investigations. However, existing methods cannot effectively employ deep learning techniques to match noisy and occluded crime-scene shoeprints to a shoe database due to a lack of training data. Moreover, all existing methods match crime-scene shoeprints to clean reference prints, yet our analysis shows matching to more informative tread depth maps yields better retrieval results. The matching task is further complicated by the necessity to identify similarities only in corresponding regions (heels, toes, etc) of prints and shoe treads. To overcome these challenges, we leverage shoe tread images from online retailers and utilize an off-the-shelf predictor to estimate depth maps and clean prints. Our method, named CriSp, matches crime-scene shoeprints to tread depth maps by training on this data. CriSp incorporates data augmentation to simulate crime-scene shoeprints, an encoder to learn spatially-aware features, and a masking module to ensure only visible regions of crime-scene prints affect retrieval results. To validate our approach, we introduce two validation sets by reprocessing existing datasets of crime-scene shoeprints and establish a benchmarking protocol for comparison. On this benchmark, CriSp significantly outperforms state-of-the-art methods in both automated shoeprint matching and image retrieval tailored to this task.
Constellation Dataset: Benchmarking High-Altitude Object Detection for an Urban Intersection
Authors: Mehmet Kerem Turkcan, Sanjeev Narasimhan, Chengbo Zang, Gyung Hyun Je, Bo Yu, Mahshid Ghasemi, Javad Ghaderi, Gil Zussman, Zoran Kostic
Date: 2024-04-25 00:00:00
Tasks: Benchmarking, object-detection, Object Detection, Small Object Detection

We introduce Constellation, a dataset of 13K images suitable for research on detection of objects in dense urban streetscapes observed from high-elevation cameras, collected for a variety of temporal conditions. The dataset addresses the need for curated data to explore problems in small object detection exemplified by the limited pixel footprint of pedestrians observed tens of meters from above. It enables the testing of object detection models for variations in lighting, building shadows, weather, and scene dynamics. We evaluate contemporary object detection architectures on the dataset, observing that state-of-the-art methods have lower performance in detecting small pedestrians compared to vehicles, corresponding to a 10% difference in average precision (AP). Using structurally similar datasets for pretraining the models results in an increase of 1.8% mean AP (mAP). We further find that incorporating domain-specific data augmentations helps improve model performance. Using pseudo-labeled data, obtained from inference outcomes of the best-performing models, improves the performance of the models. Finally, comparing the models trained using the data collected in two different time intervals, we find a performance drift in models due to the changes in intersection conditions over time. The best-performing model achieves a pedestrian AP of 92.0% with 11.5 ms inference time on NVIDIA A100 GPUs, and an mAP of 95.4%.
An exactly solvable model for emergence and scaling laws in the multitask sparse parity problem
Authors: Yoonsoo Nam, Nayara Fonseca, Seok Hyeong Lee, Chris Mingard, Ard A. Louis
Date: 2024-04-26 00:00:00

Deep learning models can exhibit what appears to be a sudden ability to solve a new problem as training time, training data, or model size increases, a phenomenon known as emergence. In this paper, we present a framework where each new ability (a skill) is represented as a basis function. We solve a simple multi-linear model in this skill-basis, finding analytic expressions for the emergence of new skills, as well as for scaling laws of the loss with training time, data size, model size, and optimal compute. We compare our detailed calculations to direct simulations of a two-layer neural network trained on multitask sparse parity, where the tasks in the dataset are distributed according to a power-law. Our simple model captures, using a single fit parameter, the sigmoidal emergence of multiple new skills as training time, data size or model size increases in the neural network.
Federated Transfer Component Analysis Towards Effective VNF Profiling
Authors: Xunzheng Zhang, Shadi Moazzeni, Juan Marcelo Parra-Ullauri, Reza Nejabati, Dimitra Simeonidou
Date: 2024-04-26 00:00:00
Tasks: Domain Adaptation, Transfer Learning

The increasing concerns of knowledge transfer and data privacy challenge the traditional gather-and-analyse paradigm in networks. Specifically, the intelligent orchestration of Virtual Network Functions (VNFs) requires understanding and profiling the resource consumption. However, profiling all kinds of VNFs is time-consuming. It is important to consider transferring the well-profiled VNF knowledge to other lack-profiled VNF types while keeping data private. To this end, this paper proposes a Federated Transfer Component Analysis (FTCA) method between the source and target VNFs. FTCA first trains Generative Adversarial Networks (GANs) based on the source VNF profiling data, and the trained GANs model is sent to the target VNF domain. Then, FTCA realizes federated domain adaptation by using the generated source VNF data and less target VNF profiling data, while keeping the raw data locally. Experiments show that the proposed FTCA can effectively predict the required resources for the target VNF. Specifically, the RMSE index of the regression model decreases by 38.5% and the R-squared metric advances up to 68.6%.
A Semi-Automatic Approach to Create Large Gender- and Age-Balanced Speaker Corpora: Usefulness of Speaker Diarization & Identification
Authors: Rémi Uro, David Doukhan, Albert Rilliard, Laëtitia Larcher, Anissa-Claire Adgharouamane, Marie Tahon, Antoine Laurent
Date: 2024-04-26 00:00:00
Tasks: speaker-diarization, Speaker Diarization

This paper presents a semi-automatic approach to create a diachronic corpus of voices balanced for speaker's age, gender, and recording period, according to 32 categories (2 genders, 4 age ranges and 4 recording periods). Corpora were selected at French National Institute of Audiovisual (INA) to obtain at least 30 speakers per category (a total of 960 speakers; only 874 have be found yet). For each speaker, speech excerpts were extracted from audiovisual documents using an automatic pipeline consisting of speech detection, background music and overlapped speech removal and speaker diarization, used to present clean speaker segments to human annotators identifying target speakers. This pipeline proved highly effective, cutting down manual processing by a factor of ten. Evaluation of the quality of the automatic processing and of the final output is provided. It shows the automatic processing compare to up-to-date process, and that the output provides high quality speech for most of the selected excerpts. This method shows promise for creating large corpora of known target speakers.
Bridging the Fairness Divide: Achieving Group and Individual Fairness in Graph Neural Networks
Authors: Duna Zhan, Dongliang Guo, Pengsheng Ji, Sheng Li
Date: 2024-04-26 00:00:00
Tasks: Drug Discovery, Fairness, Graph Learning, Graph Neural Network, Recommendation Systems

Graph neural networks (GNNs) have emerged as a powerful tool for analyzing and learning from complex data structured as graphs, demonstrating remarkable effectiveness in various applications, such as social network analysis, recommendation systems, and drug discovery. However, despite their impressive performance, the fairness problem has increasingly gained attention as a crucial aspect to consider. Existing research in graph learning focuses on either group fairness or individual fairness. However, since each concept provides unique insights into fairness from distinct perspectives, integrating them into a fair graph neural network system is crucial. To the best of our knowledge, no study has yet to comprehensively tackle both individual and group fairness simultaneously. In this paper, we propose a new concept of individual fairness within groups and a novel framework named Fairness for Group and Individual (FairGI), which considers both group fairness and individual fairness within groups in the context of graph learning. FairGI employs the similarity matrix of individuals to achieve individual fairness within groups, while leveraging adversarial learning to address group fairness in terms of both Equal Opportunity and Statistical Parity. The experimental results demonstrate that our approach not only outperforms other state-of-the-art models in terms of group fairness and individual fairness within groups, but also exhibits excellent performance in population-level individual fairness, while maintaining comparable prediction accuracy.
Constrained Neural Networks for Interpretable Heuristic Creation to Optimise Computer Algebra Systems
Authors: Dorian Florescu, Matthew England
Date: 2024-04-26 00:00:00

We present a new methodology for utilising machine learning technology in symbolic computation research. We explain how a well known human-designed heuristic to make the choice of variable ordering in cylindrical algebraic decomposition may be represented as a constrained neural network. This allows us to then use machine learning methods to further optimise the heuristic, leading to new networks of similar size, representing new heuristics of similar complexity as the original human-designed one. We present this as a form of ante-hoc explainability for use in computer algebra development.