pwc-archive/papers-with-abstracts huggingface dataset:
Functional Classification of Spiking Signal Data Using Artificial Intelligence Techniques: A Review
Authors: Danial Sharifrazi, Nouman Javed, Javad Hassannataj Joloudari, Roohallah Alizadehsani, Prasad N. Paradkar, Ru-San Tan, U. Rajendra Acharya, Asim Bhatti
Date: 2024-09-26 00:00:00
Tasks: Classification, EEG

Human brain neuron activities are incredibly significant nowadays. Neuronal behavior is assessed by analyzing signal data such as electroencephalography (EEG), which can offer scientists valuable information about diseases and human-computer interaction. One of the difficulties researchers confront while evaluating these signals is the existence of large volumes of spike data. Spikes are some considerable parts of signal data that can happen as a consequence of vital biomarkers or physical issues such as electrode movements. Hence, distinguishing types of spikes is important. From this spot, the spike classification concept commences. Previously, researchers classified spikes manually. The manual classification was not precise enough as it involves extensive analysis. Consequently, Artificial Intelligence (AI) was introduced into neuroscience to assist clinicians in classifying spikes correctly. This review discusses the importance and use of AI in spike classification, focusing on the recognition of neural activity noises. The task is divided into three main components: preprocessing, classification, and evaluation. Existing methods are introduced and their importance is determined. The review also highlights the need for more efficient algorithms. The primary goal is to provide a perspective on spike classification for future research and provide a comprehensive understanding of the methodologies and issues involved. The review organizes materials in the spike classification field for future studies. In this work, numerous studies were extracted from different databases. The PRISMA-related research guidelines were then used to choose papers. Then, research studies based on spike classification using machine learning and deep learning approaches with effective preprocessing were selected.
From News to Forecast: Integrating Event Analysis in LLM-Based Time Series Forecasting with Reflection
Authors: Xinlei Wang, Maike Feng, Jing Qiu, Jinjin Gu, Junhua Zhao
Date: 2024-09-26 00:00:00
Tasks: Time Series, Time Series Forecasting

This paper introduces a novel approach that leverages Large Language Models (LLMs) and Generative Agents to enhance time series forecasting by reasoning across both text and time series data. With language as a medium, our method adaptively integrates social events into forecasting models, aligning news content with time series fluctuations to provide richer insights. Specifically, we utilize LLM-based agents to iteratively filter out irrelevant news and employ human-like reasoning to evaluate predictions. This enables the model to analyze complex events, such as unexpected incidents and shifts in social behavior, and continuously refine the selection logic of news and the robustness of the agent's output. By integrating selected news events with time series data, we fine-tune a pre-trained LLM to predict sequences of digits in time series. The results demonstrate significant improvements in forecasting accuracy, suggesting a potential paradigm shift in time series forecasting through the effective utilization of unstructured news data.
NeuroPath: A Neural Pathway Transformer for Joining the Dots of Human Connectomes
Authors: Ziquan Wei, Tingting Dan, Jiaqi Ding, Guorong Wu
Date: 2024-09-26 00:00:00
Tasks: 2-task Classification, 4-task Classification, Alzheimer's Detection, Functional Connectivity, Graph Classification, Graph Representation Learning, Representation Learning, Zero-Shot Learning

Although modern imaging technologies allow us to study connectivity between two distinct brain regions in-vivo, an in-depth understanding of how anatomical structure supports brain function and how spontaneous functional fluctuations emerge remarkable cognition is still elusive. Meanwhile, tremendous efforts have been made in the realm of machine learning to establish the nonlinear mapping between neuroimaging data and phenotypic traits. However, the absence of neuroscience insight in the current approaches poses significant challenges in understanding cognitive behavior from transient neural activities. To address this challenge, we put the spotlight on the coupling mechanism of structural connectivity (SC) and functional connectivity (FC) by formulating such network neuroscience question into an expressive graph representation learning problem for high-order topology. Specifically, we introduce the concept of topological detour to characterize how a ubiquitous instance of FC (direct link) is supported by neural pathways (detour) physically wired by SC, which forms a cyclic loop interacted by brain structure and function. In the clich\'e of machine learning, the multi-hop detour pathway underlying SC-FC coupling allows us to devise a novel multi-head self-attention mechanism within Transformer to capture multi-modal feature representation from paired graphs of SC and FC. Taken together, we propose a biological-inspired deep model, coined as NeuroPath, to find putative connectomic feature representations from the unprecedented amount of neuroimages, which can be plugged into various downstream applications such as task recognition and disease diagnosis. We have evaluated NeuroPath on large-scale public datasets including HCP and UK Biobank under supervised and zero-shot learning, where the state-of-the-art performance by our NeuroPath indicates great potential in network neuroscience.
Uni-Med: A Unified Medical Generalist Foundation Model For Multi-Task Learning Via Connector-MoE
Authors: Xun Zhu, Ying Hu, Fanbin Mo, Miao Li, Ji Wu
Date: 2024-09-26 00:00:00
Tasks: image-classification, Image Classification, Mixture-of-Experts, Multi-Task Learning, Question Answering, Referring Expression, Referring Expression Comprehension, Referring expression generation, Visual Question Answering

Multi-modal large language models (MLLMs) have shown impressive capabilities as a general-purpose interface for various visual and linguistic tasks. However, building a unified MLLM for multi-task learning in the medical field remains a thorny challenge. To mitigate the tug-of-war problem of multi-modal multi-task optimization in MLLMs, recent advances primarily focus on improving the LLM components, while neglecting the connector that bridges the gap between modalities. In this paper, we introduce Uni-Med, a novel medical generalist foundation model which consists of a universal visual feature extraction module, a connector mixture-of-experts (CMoE) module, and an LLM. Benefiting from the proposed CMoE that leverages a well-designed router with a mixture of projection experts at the connector, Uni-Med achieves efficient solution to the tug-of-war problem and can perform six different medical tasks including question answering, visual question answering, report generation, referring expression comprehension, referring expression generation and image classification. To the best of our knowledge, Uni-Med is the first effort to tackle multi-task interference at the connector in MLLMs. Extensive ablation experiments validate the effectiveness of introducing CMoE under any configuration, with up to an average 8% performance gains. We further provide interpretation analysis of the tug-of-war problem from the perspective of gradient optimization and parameter statistics. Compared to previous state-of-the-art medical MLLMs, Uni-Med achieves competitive or superior evaluation metrics on diverse tasks. Code and resources are available at https://github.com/tsinghua-msiip/Uni-Med.
GLinSAT: The General Linear Satisfiability Neural Network Layer By Accelerated Gradient Descent
Authors: Hongtai Zeng, Chao Yang, Yanzhen Zhou, Cheng Yang, Qinglai Guo
Date: 2024-09-26 00:00:00
Tasks: Decision Making, Graph Matching

Ensuring that the outputs of neural networks satisfy specific constraints is crucial for applying neural networks to real-life decision-making problems. In this paper, we consider making a batch of neural network outputs satisfy bounded and general linear constraints. We first reformulate the neural network output projection problem as an entropy-regularized linear programming problem. We show that such a problem can be equivalently transformed into an unconstrained convex optimization problem with Lipschitz continuous gradient according to the duality theorem. Then, based on an accelerated gradient descent algorithm with numerical performance enhancement, we present our architecture, GLinSAT, to solve the problem. To the best of our knowledge, this is the first general linear satisfiability layer in which all the operations are differentiable and matrix-factorization-free. Despite the fact that we can explicitly perform backpropagation based on automatic differentiation mechanism, we also provide an alternative approach in GLinSAT to calculate the derivatives based on implicit differentiation of the optimality condition. Experimental results on constrained traveling salesman problems, partial graph matching with outliers, predictive portfolio allocation and power system unit commitment demonstrate the advantages of GLinSAT over existing satisfiability layers. Our implementation is available at \url{https://github.com/HunterTracer/GLinSAT}.
Human Mobility Modeling with Limited Information via Large Language Models
Authors: Yifan Liu, Xishun Liao, Haoxuan Ma, Brian Yueshuai He, Chris Stanford, Jiaqi Ma
Date: 2024-09-26 00:00:00
Tasks: Language Modeling, Language Modelling, Large Language Model

Understanding human mobility patterns has traditionally been a complex challenge in transportation modeling. Due to the difficulties in obtaining high-quality training datasets across diverse locations, conventional activity-based models and learning-based human mobility modeling algorithms are particularly limited by the availability and quality of datasets. Furthermore, current research mainly focuses on the spatial-temporal travel pattern but lacks an understanding of the semantic information between activities, which is crucial for modeling the interdependence between activities. In this paper, we propose an innovative Large Language Model (LLM) empowered human mobility modeling framework. Our proposed approach significantly reduces the reliance on detailed human mobility statistical data, utilizing basic socio-demographic information of individuals to generate their daily mobility patterns. We have validated our results using the NHTS and SCAG-ABM datasets, demonstrating the effective modeling of mobility patterns and the strong adaptability of our framework across various geographic locations.
Global-Local Medical SAM Adaptor Based on Full Adaption
Authors: Meng Wang, Yarong Feng, Yongwei Tang, Tian Zhang, Yuxin Liang, Chao Lv
Date: 2024-09-26 00:00:00
Tasks: Image Segmentation, Medical Image Segmentation, Segmentation, Semantic Segmentation

Emerging of visual language models, such as the segment anything model (SAM), have made great breakthroughs in the field of universal semantic segmentation and significantly aid the improvements of medical image segmentation, in particular with the help of Medical SAM adaptor (Med-SA). However, Med-SA still can be improved, as it fine-tunes SAM in a partial adaption manner. To resolve this problem, we present a novel global medical SAM adaptor (GMed-SA) with full adaption, which can adapt SAM globally. We further combine GMed-SA and Med-SA to propose a global-local medical SAM adaptor (GLMed-SA) to adapt SAM both globally and locally. Extensive experiments have been performed on the challenging public 2D melanoma segmentation dataset. The results show that GLMed-SA outperforms several state-of-the-art semantic segmentation methods on various evaluation metrics, demonstrating the superiority of our methods.
MaskLLM: Learnable Semi-Structured Sparsity for Large Language Models
Authors: Gongfan Fang, Hongxu Yin, Saurav Muralidharan, Greg Heinrich, Jeff Pool, Jan Kautz, Pavlo Molchanov, Xinchao Wang
Date: 2024-09-26 00:00:00
Tasks: Large Language Model, Model Compression, Network Pruning, Transfer Learning

Large Language Models (LLMs) are distinguished by their massive parameter counts, which typically result in significant redundancy. This work introduces MaskLLM, a learnable pruning method that establishes Semi-structured (or ``N:M'') Sparsity in LLMs, aimed at reducing computational overhead during inference. Instead of developing a new importance criterion, MaskLLM explicitly models N:M patterns as a learnable distribution through Gumbel Softmax sampling. This approach facilitates end-to-end training on large-scale datasets and offers two notable advantages: 1) High-quality Masks - our method effectively scales to large datasets and learns accurate masks; 2) Transferability - the probabilistic modeling of mask distribution enables the transfer learning of sparsity across domains or tasks. We assessed MaskLLM using 2:4 sparsity on various LLMs, including LLaMA-2, Nemotron-4, and GPT-3, with sizes ranging from 843M to 15B parameters, and our empirical results show substantial improvements over state-of-the-art methods. For instance, leading approaches achieve a perplexity (PPL) of 10 or greater on Wikitext compared to the dense model's 5.12 PPL, but MaskLLM achieves a significantly lower 6.72 PPL solely by learning the masks with frozen weights. Furthermore, MaskLLM's learnable nature allows customized masks for lossless application of 2:4 sparsity to downstream tasks or domains. Code is available at https://github.com/NVlabs/MaskLLM.
Autoregressive Multi-trait Essay Scoring via Reinforcement Learning with Scoring-aware Multiple Rewards
Authors: Heejin Do, Sangwon Ryu, Gary Geunbae Lee
Date: 2024-09-26 00:00:00
Tasks: Automated Essay Scoring, reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL)

Recent advances in automated essay scoring (AES) have shifted towards evaluating multiple traits to provide enriched feedback. Like typical AES systems, multi-trait AES employs the quadratic weighted kappa (QWK) to measure agreement with human raters, aligning closely with the rating schema; however, its non-differentiable nature prevents its direct use in neural network training. In this paper, we propose Scoring-aware Multi-reward Reinforcement Learning (SaMRL), which integrates actual evaluation schemes into the training process by designing QWK-based rewards with a mean-squared error penalty for multi-trait AES. Existing reinforcement learning (RL) applications in AES are limited to classification models despite associated performance degradation, as RL requires probability distributions; instead, we adopt an autoregressive score generation framework to leverage token generation probabilities for robust multi-trait score predictions. Empirical analyses demonstrate that SaMRL facilitates model training, notably enhancing scoring of previously inferior prompts.
Adjusting Regression Models for Conditional Uncertainty Calibration
Authors: Ruijiang Gao, Mingzhang Yin, James McInerney, Nathan Kallus
Date: 2024-09-26 00:00:00
Tasks: Conformal Prediction, Prediction, regression

Conformal Prediction methods have finite-sample distribution-free marginal coverage guarantees. However, they generally do not offer conditional coverage guarantees, which can be important for high-stakes decisions. In this paper, we propose a novel algorithm to train a regression function to improve the conditional coverage after applying the split conformal prediction procedure. We establish an upper bound for the miscoverage gap between the conditional coverage and the nominal coverage rate and propose an end-to-end algorithm to control this upper bound. We demonstrate the efficacy of our method empirically on synthetic and real-world datasets.
CadVLM: Bridging Language and Vision in the Generation of Parametric CAD Sketches
Authors: Sifan Wu, Amir Khasahmadi, Mor Katz, Pradeep Kumar Jayaraman, Yewen Pu, Karl Willis, Bang Liu
Date: 2024-09-26 00:00:00
Tasks: Language Modeling, Language Modelling, Large Language Model, Multimodal Large Language Model

Parametric Computer-Aided Design (CAD) is central to contemporary mechanical design. However, it encounters challenges in achieving precise parametric sketch modeling and lacks practical evaluation metrics suitable for mechanical design. We harness the capabilities of pre-trained foundation models, renowned for their successes in natural language processing and computer vision, to develop generative models specifically for CAD. These models are adept at understanding complex geometries and design reasoning, a crucial advancement in CAD technology. In this paper, we propose CadVLM, an end-to-end vision language model for CAD generation. Our approach involves adapting pre-trained foundation models to manipulate engineering sketches effectively, integrating both sketch primitive sequences and sketch images. Extensive experiments demonstrate superior performance on multiple CAD sketch generation tasks such as CAD autocompletion, CAD autoconstraint, and image conditional generation. To our knowledge, this is the first instance of a multimodal Large Language Model (LLM) being successfully applied to parametric CAD generation, representing a pioneering step in the field of computer-aided mechanical design.
A Time Series is Worth Five Experts: Heterogeneous Mixture of Experts for Traffic Flow Prediction
Authors: Guangyu Wang, Yujie Chen, Ming Gao, Zhiqiao Wu, Jiafu Tang, Jiabi Zhao
Date: 2024-09-26 00:00:00
Tasks: Mixture-of-Experts, Prediction, Time Series, Traffic Prediction

Accurate traffic prediction faces significant challenges, necessitating a deep understanding of both temporal and spatial cues and their complex interactions across multiple variables. Recent advancements in traffic prediction systems are primarily due to the development of complex sequence-centric models. However, existing approaches often embed multiple variables and spatial relationships at each time step, which may hinder effective variable-centric learning, ultimately leading to performance degradation in traditional traffic prediction tasks. To overcome these limitations, we introduce variable-centric and prior knowledge-centric modeling techniques. Specifically, we propose a Heterogeneous Mixture of Experts (TITAN) model for traffic flow prediction. TITAN initially consists of three experts focused on sequence-centric modeling. Then, designed a low-rank adaptive method, TITAN simultaneously enables variable-centric modeling. Furthermore, we supervise the gating process using a prior knowledge-centric modeling strategy to ensure accurate routing. Experiments on two public traffic network datasets, METR-LA and PEMS-BAY, demonstrate that TITAN effectively captures variable-centric dependencies while ensuring accurate routing. Consequently, it achieves improvements in all evaluation metrics, ranging from approximately 4.37\% to 11.53\%, compared to previous state-of-the-art (SOTA) models. The code is open at \href{https://github.com/sqlcow/TITAN}{https://github.com/sqlcow/TITAN}.
HDFlow: Enhancing LLM Complex Problem-Solving with Hybrid Thinking and Dynamic Workflows
Authors: Wenlin Yao, Haitao Mi, Dong Yu
Date: 2024-09-25 00:00:00
Tasks: Computational Efficiency

Despite recent advancements in large language models (LLMs), their performance on complex reasoning problems requiring multi-step thinking and combining various skills is still limited. To address this, we propose a novel framework HDFlow for complex reasoning with LLMs that combines fast and slow thinking modes in an adaptive manner. Our approach consists of two key components: 1) a new approach for slow, deliberate reasoning called Dynamic Workflow, which automatically decomposes complex problems into more manageable sub-tasks and dynamically designs a workflow to assemble specialized LLM or symbolic reasoning tools to solve sub-tasks; 2) Hybrid Thinking, a general framework that dynamically combines fast and slow thinking based on problem complexity. Finally, we propose an easy-to-scale method for automatically synthesizing a large-scale dataset of 27K challenging reasoning problems for complex reasoning and a hybrid thinking tuning method that trains smaller LLMs on this dataset to internalize the fast/slow hybrid reasoning strategies. Experiments on four reasoning benchmark datasets demonstrate that our slow thinking with dynamic workflows significantly outperforms Chain-of-Thought, and hybrid thinking achieves the highest accuracy while providing an effective balance between computational efficiency and performance. Fine-tuning using our hybrid thinking approach also significantly boosts the complex reasoning capabilities of open-source language models. The results showcase the promise of slow thinking, dynamic workflows, and hybrid thinking in expanding the frontier of complex problem-solving with LLMs\footnote{Code and data will be released at \url{https://github.com/wenlinyao/HDFlow}.}.
Exploring the Use of ChatGPT for a Systematic Literature Review: a Design-Based Research
Authors: Qian Huang, Qiyun Wang
Date: 2024-09-25 00:00:00
Tasks: Systematic Literature Review

ChatGPT has been used in several educational contexts,including learning, teaching and research. It also has potential to conduct the systematic literature review (SLR). However, there are limited empirical studies on how to use ChatGPT in conducting a SLR. Based on a SLR published,this study used ChatGPT to conduct a SLR of the same 33 papers in a design-based approach, to see what the differences are by comparing the reviews' results,and to answer: To what extent can ChatGPT conduct SLR? What strategies can human researchers utilize to structure prompts for ChatGPT that enhance the reliability and validity of a SLR? This study found that ChatGPT could conduct a SLR. It needs detailed and accurate prompts to analyze the literature. It also has limitations. Guiding principles are summarized from this study for researchers to follow when they need to conduct SLRs using ChatGPT.
Discovering the Gems in Early Layers: Accelerating Long-Context LLMs with 1000x Input Token Reduction
Authors: Zhenmei Shi, Yifei Ming, Xuan-Phi Nguyen, YIngyu Liang, Shafiq Joty
Date: 2024-09-25 00:00:00
Tasks: GPU, Token Reduction

Large Language Models (LLMs) have demonstrated remarkable capabilities in handling long context inputs, but this comes at the cost of increased computational resources and latency. Our research introduces a novel approach for the long context bottleneck to accelerate LLM inference and reduce GPU memory consumption. Our research demonstrates that LLMs can identify relevant tokens in the early layers before generating answers to a query. Leveraging this insight, we propose an algorithm that uses early layers of an LLM as filters to select and compress input tokens, significantly reducing the context length for subsequent processing. Our method, GemFilter, demonstrates substantial improvements in both speed and memory efficiency compared to existing techniques, such as standard attention and SnapKV/H2O. Notably, it achieves a 2.4$\times$ speedup and 30\% reduction in GPU memory usage compared to SOTA methods. Evaluation on the Needle in a Haystack task shows that GemFilter significantly outperforms standard attention, SnapKV and demonstrates comparable performance on the LongBench challenge. GemFilter is simple, training-free, and broadly applicable across different LLMs. Crucially, it provides interpretability by allowing humans to inspect the selected input sequence. These findings not only offer practical benefits for LLM deployment, but also enhance our understanding of LLM internal mechanisms, paving the way for further optimizations in LLM design and inference. Our code is available at \url{https://github.com/SalesforceAIResearch/GemFilter}.