pwc-archive/papers-with-abstracts huggingface dataset:
Topics as Entity Clusters: Entity-based Topics from Large Language Models and Graph Neural Networks
Authors: Manuel V. Loureiro, Steven Derby, Tri Kurniawan Wijaya
Date: 2023-01-06 00:00:00
Tasks: Graph Neural Network, Language Modelling, Topic Models

Topic models aim to reveal latent structures within a corpus of text, typically through the use of term-frequency statistics over bag-of-words representations from documents. In recent years, conceptual entities -- interpretable, language-independent features linked to external knowledge resources -- have been used in place of word-level tokens, as words typically require extensive language processing with a minimal assurance of interpretability. However, current literature is limited when it comes to exploring purely entity-driven neural topic modeling. For instance, despite the advantages of using entities for eliciting thematic structure, it is unclear whether current techniques are compatible with these sparsely organised, information-dense conceptual units. In this work, we explore entity-based neural topic modeling and propose a novel topic clustering approach using bimodal vector representations of entities. Concretely, we extract these latent representations from large language models and graph neural networks trained on a knowledge base of symbolic relations, in order to derive the most salient aspects of these conceptual units. Analysis of coherency metrics confirms that our approach is better suited to working with entities in comparison to state-of-the-art models, particularly when using graph-based embeddings trained on a knowledge base.
Myths and Legends in High-Performance Computing
Authors: Satoshi Matsuoka, Jens Domke, Mohamed Wahib, Aleksandr Drozd, Torsten Hoefler
Date: 2023-01-06 00:00:00
Tasks: Articles, Vocal Bursts Intensity Prediction

In this thought-provoking article, we discuss certain myths and legends that are folklore among members of the high-performance computing community. We gathered these myths from conversations at conferences and meetings, product advertisements, papers, and other communications such as tweets, blogs, and news articles within and beyond our community. We believe they represent the zeitgeist of the current era of massive change, driven by the end of many scaling laws such as Dennard scaling and Moore's law. While some laws end, new directions are emerging, such as algorithmic scaling or novel architecture research. Nevertheless, these myths are rarely based on scientific facts, but rather on some evidence or argumentation. In fact, we believe that this is the very reason for the existence of many myths and why they cannot be answered clearly. While it feels like there should be clear answers for each, some may remain endless philosophical debates, such as whether Beethoven was better than Mozart. We would like to see our collection of myths as a discussion of possible new directions for research and industry investment.
Reversibility of elliptical slice sampling revisited
Authors: Mareike Hasenpflug, Viacheslav Telezhnikov, Daniel Rudolf
Date: 2023-01-06 00:00:00

We extend elliptical slice sampling, a Markov chain transition kernel suggested in Murray, Adams and MacKay 2010, to infinite-dimensional separable Hilbert spaces and discuss its well-definedness. We point to a regularity requirement, provide an alternative proof of the desirable reversibility property and show that it induces a positive semi-definite Markov operator. Crucial within the proof of the formerly mentioned results is the analysis of a shrinkage Markov chain that may be interesting on its own.
Conformal Loss-Controlling Prediction
Authors: Di Wang, Ping Wang, Zhong Ji, Xiaojun Yang, Hongyue Li
Date: 2023-01-06 00:00:00
Tasks: Conformal Prediction, Prediction, Weather Forecasting

Conformal prediction is a learning framework controlling prediction coverage of prediction sets, which can be built on any learning algorithm for point prediction. This work proposes a learning framework named conformal loss-controlling prediction, which extends conformal prediction to the situation where the value of a loss function needs to be controlled. Different from existing works about risk-controlling prediction sets and conformal risk control with the purpose of controlling the expected values of loss functions, the proposed approach in this paper focuses on the loss for any test object, which is an extension of conformal prediction from miscoverage loss to some general loss. The controlling guarantee is proved under the assumption of exchangeability of data in finite-sample cases and the framework is tested empirically for classification with a class-varying loss and statistical postprocessing of numerical weather forecasting applications, which are introduced as point-wise classification and point-wise regression problems. All theoretical analysis and experimental results confirm the effectiveness of our loss-controlling approach.
Learning Personalized Brain Functional Connectivity of MDD Patients from Multiple Sites via Federated Bayesian Networks
Authors: Shuai Liu, Xiao Guo, Shun Qi, Huaning Wang, Xiangyu Chang
Date: 2023-01-06 00:00:00
Tasks: Federated Learning, Functional Connectivity

Identifying functional connectivity biomarkers of major depressive disorder (MDD) patients is essential to advance understanding of the disorder mechanisms and early intervention. However, due to the small sample size and the high dimension of available neuroimaging data, the performance of existing methods is often limited. Multi-site data could enhance the statistical power and sample size, while they are often subject to inter-site heterogeneity and data-sharing policies. In this paper, we propose a federated joint estimator, NOTEARS-PFL, for simultaneous learning of multiple Bayesian networks (BNs) with continuous optimization, to identify disease-induced alterations in MDD patients. We incorporate information shared between sites and site-specific information into the proposed federated learning framework to learn personalized BN structures by introducing the group fused lasso penalty. We develop the alternating direction method of multipliers, where in the local update step, the neuroimaging data is processed at each local site. Then the learned network structures are transmitted to the center for the global update. In particular, we derive a closed-form expression for the local update step and use the iterative proximal projection method to deal with the group fused lasso penalty in the global update step. We evaluate the performance of the proposed method on both synthetic and real-world multi-site rs-fMRI datasets. The results suggest that the proposed NOTEARS-PFL yields superior effectiveness and accuracy than the comparable methods.
Provable Reset-free Reinforcement Learning by No-Regret Reduction
Authors: Hoai-An Nguyen, Ching-An Cheng
Date: 2023-01-06 00:00:00
Tasks: reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL)

Reinforcement learning (RL) so far has limited real-world applications. One key challenge is that typical RL algorithms heavily rely on a reset mechanism to sample proper initial states; these reset mechanisms, in practice, are expensive to implement due to the need for human intervention or heavily engineered environments. To make learning more practical, we propose a generic no-regret reduction to systematically design reset-free RL algorithms. Our reduction turns the reset-free RL problem into a two-player game. We show that achieving sublinear regret in this two-player game would imply learning a policy that has both sublinear performance regret and sublinear total number of resets in the original RL problem. This means that the agent eventually learns to perform optimally and avoid resets. To demonstrate the effectiveness of this reduction, we design an instantiation for linear Markov decision processes, which is the first provably correct reset-free RL algorithm.
Multi-Genre Music Transformer -- Composing Full Length Musical Piece
Authors: Abhinav Kaushal Keshari
Date: 2023-01-06 00:00:00
Tasks: Music Generation

In the task of generating music, the art factor plays a big role and is a great challenge for AI. Previous work involving adversarial training to produce new music pieces and modeling the compatibility of variety in music (beats, tempo, musical stems) demonstrated great examples of learning this task. Though this was limited to generating mashups or learning features from tempo and key distributions to produce similar patterns. Compound Word Transformer was able to represent music generation task as a sequence generation challenge involving musical events defined by compound words. These musical events give a more accurate description of notes progression, chord change, harmony and the art factor. The objective of the project is to implement a Multi-Genre Transformer which learns to produce music pieces through more adaptive learning process involving more challenging task where genres or form of the composition is also considered. We built a multi-genre compound word dataset, implemented a linear transformer which was trained on this dataset. We call this Multi-Genre Transformer, which was able to generate full length new musical pieces which is diverse and comparable to original tracks. The model trains 2-5 times faster than other models discussed.
Deep Biological Pathway Informed Pathology-Genomic Multimodal Survival Prediction
Authors: Lin Qiu, Aminollah Khormali, Kai Liu
Date: 2023-01-06 00:00:00
Tasks: Prognosis, Survival Prediction

The integration of multi-modal data, such as pathological images and genomic data, is essential for understanding cancer heterogeneity and complexity for personalized treatments, as well as for enhancing survival predictions. Despite the progress made in integrating pathology and genomic data, most existing methods cannot mine the complex inter-modality relations thoroughly. Additionally, identifying explainable features from these models that govern preclinical discovery and clinical prediction is crucial for cancer diagnosis, prognosis, and therapeutic response studies. We propose PONET- a novel biological pathway-informed pathology-genomic deep model that integrates pathological images and genomic data not only to improve survival prediction but also to identify genes and pathways that cause different survival rates in patients. Empirical results on six of The Cancer Genome Atlas (TCGA) datasets show that our proposed method achieves superior predictive performance and reveals meaningful biological interpretations. The proposed method establishes insight into how to train biologically informed deep networks on multimodal biomedical data which will have general applicability for understanding diseases and predicting response and resistance to treatment.
Deep learning for full-field ultrasonic characterization
Authors: Yang Xu, Fatemeh Pourahmadian, Jian Song, Conglin Wang
Date: 2023-01-06 00:00:00
Tasks: Deep Learning, Denoising

This study takes advantage of recent advances in machine learning to establish a physics-based data analytic platform for distributed reconstruction of mechanical properties in layered components from full waveform data. In this vein, two logics, namely the direct inversion and physics-informed neural networks (PINNs), are explored. The direct inversion entails three steps: (i) spectral denoising and differentiation of the full-field data, (ii) building appropriate neural maps to approximate the profile of unknown physical and regularization parameters on their respective domains, and (iii) simultaneous training of the neural networks by minimizing the Tikhonov-regularized PDE loss using data from (i). PINNs furnish efficient surrogate models of complex systems with predictive capabilities via multitask learning where the field variables are modeled by neural maps endowed with (scaler or distributed) auxiliary parameters such as physical unknowns and loss function weights. PINNs are then trained by minimizing a measure of data misfit subject to the underlying physical laws as constraints. In this study, to facilitate learning from ultrasonic data, the PINNs loss adopts (a) wavenumber-dependent Sobolev norms to compute the data misfit, and (b) non-adaptive weights in a specific scaling framework to naturally balance the loss objectives by leveraging the form of PDEs germane to elastic-wave propagation. Both paradigms are examined via synthetic and laboratory test data. In the latter case, the reconstructions are performed at multiple frequencies and the results are verified by a set of complementary experiments highlighting the importance of verification and validation in data-driven modeling.
Centralized Cooperative Exploration Policy for Continuous Control Tasks
Authors: Chao Li, Chen Gong, Qiang He, Xinwen Hou, Yu Liu
Date: 2023-01-06 00:00:00
Tasks: continuous-control, Continuous Control, Deep Reinforcement Learning

The deep reinforcement learning (DRL) algorithm works brilliantly on solving various complex control tasks. This phenomenal success can be partly attributed to DRL encouraging intelligent agents to sufficiently explore the environment and collect diverse experiences during the agent training process. Therefore, exploration plays a significant role in accessing an optimal policy for DRL. Despite recent works making great progress in continuous control tasks, exploration in these tasks has remained insufficiently investigated. To explicitly encourage exploration in continuous control tasks, we propose CCEP (Centralized Cooperative Exploration Policy), which utilizes underestimation and overestimation of value functions to maintain the capacity of exploration. CCEP first keeps two value functions initialized with different parameters, and generates diverse policies with multiple exploration styles from a pair of value functions. In addition, a centralized policy framework ensures that CCEP achieves message delivery between multiple policies, furthermore contributing to exploring the environment cooperatively. Extensive experimental results demonstrate that CCEP achieves higher exploration capacity. Empirical analysis shows diverse exploration styles in the learned policies by CCEP, reaping benefits in more exploration regions. And this exploration capacity of CCEP ensures it outperforms the current state-of-the-art methods across multiple continuous control tasks shown in experiments.
TrojanPuzzle: Covertly Poisoning Code-Suggestion Models
Authors: Hojjat Aghakhani, Wei Dai, Andre Manoel, Xavier Fernandes, Anant Kharkar, Christopher Kruegel, Giovanni Vigna, David Evans, Ben Zorn, Robert Sim
Date: 2023-01-06 00:00:00
Tasks: Data Poisoning

With tools like GitHub Copilot, automatic code suggestion is no longer a dream in software engineering. These tools, based on large language models, are typically trained on massive corpora of code mined from unvetted public sources. As a result, these models are susceptible to data poisoning attacks where an adversary manipulates the model's training by injecting malicious data. Poisoning attacks could be designed to influence the model's suggestions at run time for chosen contexts, such as inducing the model into suggesting insecure code payloads. To achieve this, prior attacks explicitly inject the insecure code payload into the training data, making the poison data detectable by static analysis tools that can remove such malicious data from the training set. In this work, we demonstrate two novel attacks, COVERT and TROJANPUZZLE, that can bypass static analysis by planting malicious poison data in out-of-context regions such as docstrings. Our most novel attack, TROJANPUZZLE, goes one step further in generating less suspicious poison data by never explicitly including certain (suspicious) parts of the payload in the poison data, while still inducing a model that suggests the entire payload when completing code (i.e., outside docstrings). This makes TROJANPUZZLE robust against signature-based dataset-cleansing methods that can filter out suspicious sequences from the training data. Our evaluation against models of two sizes demonstrates that both COVERT and TROJANPUZZLE have significant implications for practitioners when selecting code used to train or tune code-suggestion models.
Training trajectories, mini-batch losses and the curious role of the learning rate
Authors: Mark Sandler, Andrey Zhmoginov, Max Vladymyrov, Nolan Miller
Date: 2023-01-05 00:00:00

Stochastic gradient descent plays a fundamental role in nearly all applications of deep learning. However its ability to converge to a global minimum remains shrouded in mystery. In this paper we propose to study the behavior of the loss function on fixed mini-batches along SGD trajectories. We show that the loss function on a fixed batch appears to be remarkably convex-like. In particular for ResNet the loss for any fixed mini-batch can be accurately modeled by a quadratic function and a very low loss value can be reached in just one step of gradient descent with sufficiently large learning rate. We propose a simple model that allows to analyze the relationship between the gradients of stochastic mini-batches and the full batch. Our analysis allows us to discover the equivalency between iterate aggregates and specific learning rate schedules. In particular, for Exponential Moving Average (EMA) and Stochastic Weight Averaging we show that our proposed model matches the observed training trajectories on ImageNet. Our theoretical model predicts that an even simpler averaging technique, averaging just two points a many steps apart, significantly improves accuracy compared to the baseline. We validated our findings on ImageNet and other datasets using ResNet architecture.
Language as a Latent Sequence: deep latent variable models for semi-supervised paraphrase generation
Authors: Jialin Yu, Alexandra I. Cristea, Anoushka Harit, Zhongtian Sun, Olanrewaju Tahir Aduragba, Lei Shi, Noura Al Moubayed
Date: 2023-01-05 00:00:00
Tasks: Paraphrase Generation

This paper explores deep latent variable models for semi-supervised paraphrase generation, where the missing target pair for unlabelled data is modelled as a latent paraphrase sequence. We present a novel unsupervised model named variational sequence auto-encoding reconstruction (VSAR), which performs latent sequence inference given an observed text. To leverage information from text pairs, we additionally introduce a novel supervised model we call dual directional learning (DDL), which is designed to integrate with our proposed VSAR model. Combining VSAR with DDL (DDL+VSAR) enables us to conduct semi-supervised learning. Still, the combined model suffers from a cold-start problem. To further combat this issue, we propose an improved weight initialisation solution, leading to a novel two-stage training scheme we call knowledge-reinforced-learning (KRL). Our empirical evaluations suggest that the combined model yields competitive performance against the state-of-the-art supervised baselines on complete data. Furthermore, in scenarios where only a fraction of the labelled pairs are available, our combined model consistently outperforms the strong supervised model baseline (DDL) by a significant margin (p <.05; Wilcoxon test). Our code is publicly available at "https://github.com/jialin-yu/latent-sequence-paraphrase".
Singing voice synthesis based on frame-level sequence-to-sequence models considering vocal timing deviation
Authors: Miku Nishihara, Yukiya Hono, Kei Hashimoto, Yoshihiko Nankaku, Keiichi Tokuda
Date: 2023-01-05 00:00:00
Tasks: Singing Voice Synthesis

This paper proposes singing voice synthesis (SVS) based on frame-level sequence-to-sequence models considering vocal timing deviation. In SVS, it is essential to synchronize the timing of singing with temporal structures represented by scores, taking into account that there are differences between actual vocal timing and note start timing. In many SVS systems including our previous work, phoneme-level score features are converted into frame-level ones on the basis of phoneme boundaries obtained by external aligners to take into account vocal timing deviations. Therefore, the sound quality is affected by the aligner accuracy in this system. To alleviate this problem, we introduce an attention mechanism with frame-level features. In the proposed system, the attention mechanism absorbs alignment errors in phoneme boundaries. Additionally, we evaluate the system with pseudo-phoneme-boundaries defined by heuristic rules based on musical scores when there is no aligner. The experimental results show the effectiveness of the proposed system.
MSCDA: Multi-level Semantic-guided Contrast Improves Unsupervised Domain Adaptation for Breast MRI Segmentation in Small Datasets
Authors: Sheng Kuang, Henry C. Woodruff, Renee Granzier, Thiemo J. A. van Nijnatten, Marc B. I. Lobbes, Marjolein L. Smidt, Philippe Lambin, Siamak Mehrkanoon
Date: 2023-01-04 00:00:00
Tasks: Contrastive Learning, Domain Adaptation, MRI segmentation, Unsupervised Domain Adaptation

Deep learning (DL) applied to breast tissue segmentation in magnetic resonance imaging (MRI) has received increased attention in the last decade, however, the domain shift which arises from different vendors, acquisition protocols, and biological heterogeneity, remains an important but challenging obstacle on the path towards clinical implementation. In this paper, we propose a novel Multi-level Semantic-guided Contrastive Domain Adaptation (MSCDA) framework to address this issue in an unsupervised manner. Our approach incorporates self-training with contrastive learning to align feature representations between domains. In particular, we extend the contrastive loss by incorporating pixel-to-pixel, pixel-to-centroid, and centroid-to-centroid contrasts to better exploit the underlying semantic information of the image at different levels. To resolve the data imbalance problem, we utilize a category-wise cross-domain sampling strategy to sample anchors from target images and build a hybrid memory bank to store samples from source images. We have validated MSCDA with a challenging task of cross-domain breast MRI segmentation between datasets of healthy volunteers and invasive breast cancer patients. Extensive experiments show that MSCDA effectively improves the model's feature alignment capabilities between domains, outperforming state-of-the-art methods. Furthermore, the framework is shown to be label-efficient, achieving good performance with a smaller source dataset. The code is publicly available at \url{https://github.com/ShengKuangCN/MSCDA}.
Machine Fault Classification using Hamiltonian Neural Networks
Authors: Jeremy Shen, Jawad Chowdhury, Sourav Banerjee, Gabriel Terejanu
Date: 2023-01-04 00:00:00
Tasks: Binary Classification, Classification

A new approach is introduced to classify faults in rotating machinery based on the total energy signature estimated from sensor measurements. The overall goal is to go beyond using black-box models and incorporate additional physical constraints that govern the behavior of mechanical systems. Observational data is used to train Hamiltonian neural networks that describe the conserved energy of the system for normal and various abnormal regimes. The estimated total energy function, in the form of the weights of the Hamiltonian neural network, serves as the new feature vector to discriminate between the faults using off-the-shelf classification models. The experimental results are obtained using the MaFaulDa database, where the proposed model yields a promising area under the curve (AUC) of $0.78$ for the binary classification (normal vs abnormal) and $0.84$ for the multi-class problem (normal, and $5$ different abnormal regimes).