pwc-archive/papers-with-abstracts huggingface dataset:
FreeSeed: Frequency-band-aware and Self-guided Network for Sparse-view CT Reconstruction
Authors: Chenglong Ma, Zilong Li, Junping Zhang, Yi Zhang, Hongming Shan
Date: 2023-07-12 00:00:00
Tasks: Computed Tomography (CT), CT Reconstruction

Sparse-view computed tomography (CT) is a promising solution for expediting the scanning process and mitigating radiation exposure to patients, the reconstructed images, however, contain severe streak artifacts, compromising subsequent screening and diagnosis. Recently, deep learning-based image post-processing methods along with their dual-domain counterparts have shown promising results. However, existing methods usually produce over-smoothed images with loss of details due to (1) the difficulty in accurately modeling the artifact patterns in the image domain, and (2) the equal treatment of each pixel in the loss function. To address these issues, we concentrate on the image post-processing and propose a simple yet effective FREquency-band-awarE and SElf-guidED network, termed FreeSeed, which can effectively remove artifact and recover missing detail from the contaminated sparse-view CT images. Specifically, we first propose a frequency-band-aware artifact modeling network (FreeNet), which learns artifact-related frequency-band attention in Fourier domain for better modeling the globally distributed streak artifact on the sparse-view CT images. We then introduce a self-guided artifact refinement network (SeedNet), which leverages the predicted artifact to assist FreeNet in continuing to refine the severely corrupted details. Extensive experiments demonstrate the superior performance of FreeSeed and its dual-domain counterpart over the state-of-the-art sparse-view CT reconstruction methods. Source code is made available at https://github.com/Masaaki-75/freeseed.
Rethinking Mitosis Detection: Towards Diverse Data and Feature Representation
Authors: Hao Wang, Jiatai Lin, Danyi Li, Jing Wang, Bingchao Zhao, Zhenwei Shi, Xipeng Pan, Huadeng Wang, Bingbing Li, Changhong Liang, Guoqiang Han, Li Liang, Chu Han, Zaiyi Liu
Date: 2023-07-12 00:00:00
Tasks: Diversity, Mitosis Detection

Mitosis detection is one of the fundamental tasks in computational pathology, which is extremely challenging due to the heterogeneity of mitotic cell. Most of the current studies solve the heterogeneity in the technical aspect by increasing the model complexity. However, lacking consideration of the biological knowledge and the complex model design may lead to the overfitting problem while limited the generalizability of the detection model. In this paper, we systematically study the morphological appearances in different mitotic phases as well as the ambiguous non-mitotic cells and identify that balancing the data and feature diversity can achieve better generalizability. Based on this observation, we propose a novel generalizable framework (MitDet) for mitosis detection. The data diversity is considered by the proposed diversity-guided sample balancing (DGSB). And the feature diversity is preserved by inter- and intra- class feature diversity-preserved module (InCDP). Stain enhancement (SE) module is introduced to enhance the domain-relevant diversity of both data and features simultaneously. Extensive experiments have demonstrated that our proposed model outperforms all the SOTA approaches in several popular mitosis detection datasets in both internal and external test sets using minimal annotation efforts with point annotations only. Comprehensive ablation studies have also proven the effectiveness of the rethinking of data and feature diversity balancing. By analyzing the results quantitatively and qualitatively, we believe that our proposed model not only achieves SOTA performance but also might inspire the future studies in new perspectives. Source code is at https://github.com/Onehour0108/MitDet.
Multi-Object Tracking as Attention Mechanism
Authors: Hiroshi Fukui, Taiki Miyagawa, Yusuke Morishita
Date: 2023-07-12 00:00:00
Tasks: Multi-Object Tracking, Object, Object Tracking

We propose a conceptually simple and thus fast multi-object tracking (MOT) model that does not require any attached modules, such as the Kalman filter, Hungarian algorithm, transformer blocks, or graph networks. Conventional MOT models are built upon the multi-step modules listed above, and thus the computational cost is high. Our proposed end-to-end MOT model, \textit{TicrossNet}, is composed of a base detector and a cross-attention module only. As a result, the overhead of tracking does not increase significantly even when the number of instances ($N_t$) increases. We show that TicrossNet runs \textit{in real-time}; specifically, it achieves 32.6 FPS on MOT17 and 31.0 FPS on MOT20 (Tesla V100), which includes as many as $>$100 instances per frame. We also demonstrate that TicrossNet is robust to $N_t$; thus, it does not have to change the size of the base detector, depending on $N_t$, as is often done by other models for real-time processing.
OG: Equip vision occupancy with instance segmentation and visual grounding
Authors: ZiChao Dong, Hang Ji, Weikun Zhang, Xufeng Huang, Junbo Chen
Date: 2023-07-12 00:00:00
Tasks: Instance Segmentation, Segmentation, Semantic Segmentation, Visual Grounding

Occupancy prediction tasks focus on the inference of both geometry and semantic labels for each voxel, which is an important perception mission. However, it is still a semantic segmentation task without distinguishing various instances. Further, although some existing works, such as Open-Vocabulary Occupancy (OVO), have already solved the problem of open vocabulary detection, visual grounding in occupancy has not been solved to the best of our knowledge. To tackle the above two limitations, this paper proposes Occupancy Grounding (OG), a novel method that equips vanilla occupancy instance segmentation ability and could operate visual grounding in a voxel manner with the help of grounded-SAM. Keys to our approach are (1) affinity field prediction for instance clustering and (2) association strategy for aligning 2D instance masks and 3D occupancy instances. Extensive experiments have been conducted whose visualization results and analysis are shown below. Our code will be publicly released soon.
PIGEON: Predicting Image Geolocations
Authors: Lukas Haas, Michal Skreta, Silas Alberti, Chelsea Finn
Date: 2023-07-11 00:00:00
Proceeding: CVPR 2024 1
Tasks: Photo geolocation estimation

Planet-scale image geolocalization remains a challenging problem due to the diversity of images originating from anywhere in the world. Although approaches based on vision transformers have made significant progress in geolocalization accuracy, success in prior literature is constrained to narrow distributions of images of landmarks, and performance has not generalized to unseen places. We present a new geolocalization system that combines semantic geocell creation, multi-task contrastive pretraining, and a novel loss function. Additionally, our work is the first to perform retrieval over location clusters for guess refinements. We train two models for evaluations on street-level data and general-purpose image geolocalization; the first model, PIGEON, is trained on data from the game of Geoguessr and is capable of placing over 40% of its guesses within 25 kilometers of the target location globally. We also develop a bot and deploy PIGEON in a blind experiment against humans, ranking in the top 0.01% of players. We further challenge one of the world's foremost professional Geoguessr players to a series of six matches with millions of viewers, winning all six games. Our second model, PIGEOTTO, differs in that it is trained on a dataset of images from Flickr and Wikipedia, achieving state-of-the-art results on a wide range of image geolocalization benchmarks, outperforming the previous SOTA by up to 7.7 percentage points on the city accuracy level and up to 38.8 percentage points on the country level. Our findings suggest that PIGEOTTO is the first image geolocalization model that effectively generalizes to unseen places and that our approach can pave the way for highly accurate, planet-scale image geolocalization systems. Our code is available on GitHub.
Improving Segmentation and Detection of Lesions in CT Scans Using Intensity Distribution Supervision
Authors: Seung Yeon Shin, Thomas C. Shen, Ronald M. Summers
Date: 2023-07-11 00:00:00

We propose a method to incorporate the intensity information of a target lesion on CT scans in training segmentation and detection networks. We first build an intensity-based lesion probability (ILP) function from an intensity histogram of the target lesion. It is used to compute the probability of being the lesion for each voxel based on its intensity. Finally, the computed ILP map of each input CT scan is provided as additional supervision for network training, which aims to inform the network about possible lesion locations in terms of intensity values at no additional labeling cost. The method was applied to improve the segmentation of three different lesion types, namely, small bowel carcinoid tumor, kidney tumor, and lung nodule. The effectiveness of the proposed method on a detection task was also investigated. We observed improvements of 41.3% -> 47.8%, 74.2% -> 76.0%, and 26.4% -> 32.7% in segmenting small bowel carcinoid tumor, kidney tumor, and lung nodule, respectively, in terms of per case Dice scores. An improvement of 64.6% -> 75.5% was achieved in detecting kidney tumors in terms of average precision. The results of different usages of the ILP map and the effect of varied amount of training data are also presented.
Differentiable Forward Projector for X-ray Computed Tomography
Authors: Hyojin Kim, Kyle Champley
Date: 2023-07-11 00:00:00
Tasks: CT Reconstruction, Deep Learning, GPU

Data-driven deep learning has been successfully applied to various computed tomographic reconstruction problems. The deep inference models may outperform existing analytical and iterative algorithms, especially in ill-posed CT reconstruction. However, those methods often predict images that do not agree with the measured projection data. This paper presents an accurate differentiable forward and back projection software library to ensure the consistency between the predicted images and the original measurements. The software library efficiently supports various projection geometry types while minimizing the GPU memory footprint requirement, which facilitates seamless integration with existing deep learning training and inference pipelines. The proposed software is available as open source: https://github.com/LLNL/LEAP.
A Hierarchical Transformer Encoder to Improve Entire Neoplasm Segmentation on Whole Slide Image of Hepatocellular Carcinoma
Authors: Zhuxian Guo, Qitong Wang, Henning Müller, Themis Palpanas, Nicolas Loménie, Camille Kurtz
Date: 2023-07-11 00:00:00
Tasks: Segmentation

In digital histopathology, entire neoplasm segmentation on Whole Slide Image (WSI) of Hepatocellular Carcinoma (HCC) plays an important role, especially as a preprocessing filter to automatically exclude healthy tissue, in histological molecular correlations mining and other downstream histopathological tasks. The segmentation task remains challenging due to HCC's inherent high-heterogeneity and the lack of dependency learning in large field of view. In this article, we propose a novel deep learning architecture with a hierarchical Transformer encoder, HiTrans, to learn the global dependencies within expanded 4096$\times$4096 WSI patches. HiTrans is designed to encode and decode the patches with larger reception fields and the learned global dependencies, compared to the state-of-the-art Fully Convolutional Neural networks (FCNN). Empirical evaluations verified that HiTrans leads to better segmentation performance by taking into account regional and global dependency information.
3D Medical Image Segmentation based on multi-scale MPU-Net
Authors: Zeqiu. Yu, Shuo. Han, Ziheng. Song
Date: 2023-07-11 00:00:00
Tasks: Image Segmentation, Medical Image Segmentation, Organ Segmentation, Segmentation, Semantic Segmentation, Specificity, Tumor Segmentation

The high cure rate of cancer is inextricably linked to physicians' accuracy in diagnosis and treatment, therefore a model that can accomplish high-precision tumor segmentation has become a necessity in many applications of the medical industry. It can effectively lower the rate of misdiagnosis while considerably lessening the burden on clinicians. However, fully automated target organ segmentation is problematic due to the irregular stereo structure of 3D volume organs. As a basic model for this class of real applications, U-Net excels. It can learn certain global and local features, but still lacks the capacity to grasp spatial long-range relationships and contextual information at multiple scales. This paper proposes a tumor segmentation model MPU-Net for patient volume CT images, which is inspired by Transformer with a global attention mechanism. By combining image serialization with the Position Attention Module, the model attempts to comprehend deeper contextual dependencies and accomplish precise positioning. Each layer of the decoder is also equipped with a multi-scale module and a cross-attention mechanism. The capability of feature extraction and integration at different levels has been enhanced, and the hybrid loss function developed in this study can better exploit high-resolution characteristic information. Moreover, the suggested architecture is tested and evaluated on the Liver Tumor Segmentation Challenge 2017 (LiTS 2017) dataset. Compared with the benchmark model U-Net, MPU-Net shows excellent segmentation results. The dice, accuracy, precision, specificity, IOU, and MCC metrics for the best model segmentation results are 92.17%, 99.08%, 91.91%, 99.52%, 85.91%, and 91.74%, respectively. Outstanding indicators in various aspects illustrate the exceptional performance of this framework in automatic medical image segmentation.
Automated Artifact Detection in Ultra-widefield Fundus Photography of Patients with Sickle Cell Disease
Authors: Anqi Feng, Dimitri Johnson, Grace R. Reilly, Loka Thangamathesvaran, Ann Nampomba, Mathias Unberath, Adrienne W. Scott, Craig Jones
Date: 2023-07-11 00:00:00
Tasks: Artifact Detection, Specificity

Importance: Ultra-widefield fundus photography (UWF-FP) has shown utility in sickle cell retinopathy screening; however, image artifact may diminish quality and gradeability of images. Objective: To create an automated algorithm for UWF-FP artifact classification. Design: A neural network based automated artifact detection algorithm was designed to identify commonly encountered UWF-FP artifacts in a cross section of patient UWF-FP. A pre-trained ResNet-50 neural network was trained on a subset of the images and the classification accuracy, sensitivity, and specificity were quantified on the hold out test set. Setting: The study is based on patients from a tertiary care hospital site. Participants: There were 243 UWF-FP acquired from patients with sickle cell disease (SCD), and artifact labelling in the following categories was performed: Eyelash Present, Lower Eyelid Obstructing, Upper Eyelid Obstructing, Image Too Dark, Dark Artifact, and Image Not Centered. Results: Overall, the accuracy for each class was Eyelash Present at 83.7%, Lower Eyelid Obstructing at 83.7%, Upper Eyelid Obstructing at 98.0%, Image Too Dark at 77.6%, Dark Artifact at 93.9%, and Image Not Centered at 91.8%. Conclusions and Relevance: This automated algorithm shows promise in identifying common imaging artifacts on a subset of Optos UWF-FP in SCD patients. Further refinement is ongoing with the goal of improving efficiency of tele-retinal screening in sickle cell retinopathy (SCR) by providing a photographer real-time feedback as to the types of artifacts present, and the need for image re-acquisition. This algorithm also may have potential future applicability in other retinal diseases by improving quality and efficiency of image acquisition of UWF-FP.
Line Art Colorization of Fakemon using Generative Adversarial Neural Networks
Authors: Erick Oliveira Rodrigues, Esteban Clua, Giovani Bernardes Vitor
Date: 2023-07-11 00:00:00
Tasks: Colorization, Line Art Colorization

This work proposes a complete methodology to colorize images of Fakemon, anime-style monster-like creatures. In addition, we propose algorithms to extract the line art from colorized images as well as to extract color hints. Our work is the first in the literature to use automatic color hint extraction, to train the networks specifically with anime-styled creatures and to combine the Pix2Pix and CycleGAN approaches, two different generative adversarial networks that create a single final result. Visual results of the colorizations are feasible but there is still room for improvement.
MoP-CLIP: A Mixture of Prompt-Tuned CLIP Models for Domain Incremental Learning
Authors: Julien Nicolas, Florent Chiaroni, Imtiaz Ziko, Ola Ahmad, Christian Desrosiers, Jose Dolz
Date: 2023-07-11 00:00:00
Tasks: Incremental Learning

Despite the recent progress in incremental learning, addressing catastrophic forgetting under distributional drift is still an open and important problem. Indeed, while state-of-the-art domain incremental learning (DIL) methods perform satisfactorily within known domains, their performance largely degrades in the presence of novel domains. This limitation hampers their generalizability, and restricts their scalability to more realistic settings where train and test data are drawn from different distributions. To address these limitations, we present a novel DIL approach based on a mixture of prompt-tuned CLIP models (MoP-CLIP), which generalizes the paradigm of S-Prompting to handle both in-distribution and out-of-distribution data at inference. In particular, at the training stage we model the features distribution of every class in each domain, learning individual text and visual prompts to adapt to a given domain. At inference, the learned distributions allow us to identify whether a given test sample belongs to a known domain, selecting the correct prompt for the classification task, or from an unseen domain, leveraging a mixture of the prompt-tuned CLIP models. Our empirical evaluation reveals the poor performance of existing DIL methods under domain shift, and suggests that the proposed MoP-CLIP performs competitively in the standard DIL settings while outperforming state-of-the-art methods in OOD scenarios. These results demonstrate the superiority of MoP-CLIP, offering a robust and general solution to the problem of domain incremental learning.
SepHRNet: Generating High-Resolution Crop Maps from Remote Sensing imagery using HRNet with Separable Convolution
Authors: Priyanka Goyal, Sohan Patnaik, Adway Mitra, Manjira Sinha
Date: 2023-07-11 00:00:00
Tasks: Decoder, Deep Learning, Earth Observation

The accurate mapping of crop production is crucial for ensuring food security, effective resource management, and sustainable agricultural practices. One way to achieve this is by analyzing high-resolution satellite imagery. Deep Learning has been successful in analyzing images, including remote sensing imagery. However, capturing intricate crop patterns is challenging due to their complexity and variability. In this paper, we propose a novel Deep learning approach that integrates HRNet with Separable Convolutional layers to capture spatial patterns and Self-attention to capture temporal patterns of the data. The HRNet model acts as a backbone and extracts high-resolution features from crop images. Spatially separable convolution in the shallow layers of the HRNet model captures intricate crop patterns more effectively while reducing the computational cost. The multi-head attention mechanism captures long-term temporal dependencies from the encoded vector representation of the images. Finally, a CNN decoder generates a crop map from the aggregated representation. Adaboost is used on top of this to further improve accuracy. The proposed algorithm achieves a high classification accuracy of 97.5\% and IoU of 55.2\% in generating crop maps. We evaluate the performance of our pipeline on the Zuericrop dataset and demonstrate that our results outperform state-of-the-art models such as U-Net++, ResNet50, VGG19, InceptionV3, DenseNet, and EfficientNet. This research showcases the potential of Deep Learning for Earth Observation Systems.
Evidence-based Hand Hygiene. Can You Trust the Fluorescent-based Assessment Methods?
Authors: Száva Bánsághi, Viola Sári, Péter Szerémy, Ákos Lehotsky, Bence Takács, Brigitta K. Tóth, Tamás Haidegger
Date: 2023-07-11 00:00:00

Healthcare-Associated Infections present a major threat to patient safety globally. According to studies, more than 50% of HAI could be prevented by proper hand hygiene. Effectiveness of hand hygiene is regularly evaluated with the fluorescent method: performing hand hygiene with a handrub containing an ultra violet (UV) fluorescent marker. Typically, human experts evaluate the hands under UV-A light, and decide whether the applied handrub covered the whole hand surface. The aim of this study was to investigate how different experts judge the same UV-pattern, and compare that to microbiology for objective validation. Hands of volunteer participants were contaminated with high concentration of a Staphylococcus epidermidis suspension. Hands were incompletely disinfected with UV-labeled handrub. Four different UV-box type devices were used to take CCD pictures of the hands under UV light. Size of inadequately disinfected areas on the hands were determined in two different ways. First, based on microbiology; the areas where colonies were grown were measured. Second, four independent senior infection control specialists were asked to mark the missed areas on printed image, captured under UV light. 8 hands of healthy volunteers were examined. Expert evaluations were highly uncorrelated (regarding interrater reliability) and inconsistent. Microbiology results weakly correlated with the expert evaluations. In half of the cases, there were more than 10% difference in the size of properly disinfected area, as measured by microbiology versus human experts. Considering the result of the expert evaluations, variability was disconcertingly high. Evaluating the fluorescent method is challenging, even for highly experienced professionals. A patient safety quality assurance system cannot be built on these data quality.
Hyperspherical Embedding for Point Cloud Completion
Authors: Junming Zhang, Haomeng Zhang, Ram Vasudevan, Matthew Johnson-Roberson
Date: 2023-07-11 00:00:00
Proceeding: CVPR 2023 1
Tasks: Decoder, Multi-Task Learning, Point Cloud Completion

Most real-world 3D measurements from depth sensors are incomplete, and to address this issue the point cloud completion task aims to predict the complete shapes of objects from partial observations. Previous works often adapt an encoder-decoder architecture, where the encoder is trained to extract embeddings that are used as inputs to generate predictions from the decoder. However, the learned embeddings have sparse distribution in the feature space, which leads to worse generalization results during testing. To address these problems, this paper proposes a hyperspherical module, which transforms and normalizes embeddings from the encoder to be on a unit hypersphere. With the proposed module, the magnitude and direction of the output hyperspherical embedding are decoupled and only the directional information is optimized. We theoretically analyze the hyperspherical embedding and show that it enables more stable training with a wider range of learning rates and more compact embedding distributions. Experiment results show consistent improvement of point cloud completion in both single-task and multi-task learning, which demonstrates the effectiveness of the proposed method.