pwc-archive/papers-with-abstracts huggingface dataset:
TransformCode: A Contrastive Learning Framework for Code Embedding via Subtree Transformation
Authors: Zixiang Xian, Rubing Huang, Dave Towey, Chunrong Fang, Zhenyu Chen
Date: 2023-11-10 00:00:00
Tasks: Clone Detection, Code Search, Contrastive Learning, Data Augmentation, Method name prediction, Transfer Learning

Artificial intelligence (AI) has revolutionized software engineering (SE) by enhancing software development efficiency. The advent of pre-trained models (PTMs) leveraging transfer learning has significantly advanced AI for SE. However, existing PTMs that operate on individual code tokens suffer from several limitations: They are costly to train and fine-tune; and they rely heavily on labeled data for fine-tuning on task-specific datasets. In this paper, we present TransformCode, a novel framework that learns code embeddings in a contrastive learning manner. Our framework is encoder-agnostic and language-agnostic, which means that it can leverage any encoder model and handle any programming language. We also propose a novel data-augmentation technique called abstract syntax tree (AST) transformation, which applies syntactic and semantic transformations to the original code snippets, to generate more diverse and robust samples for contrastive learning. Our framework has several advantages over existing methods: (1) It is flexible and adaptable, because it can easily be extended to other downstream tasks that require code representation (such as code-clone detection and classification); (2) it is efficient and scalable, because it does not require a large model or a large amount of training data, and it can support any programming language; (3) it is not limited to unsupervised learning, but can also be applied to some supervised learning tasks by incorporating task-specific labels or objectives; and (4) it can also adjust the number of encoder parameters based on computing resources. We evaluate our framework on several code-related tasks, and demonstrate its effectiveness and superiority over the state-of-the-art methods such as SourcererCC, Code2vec, and InferCode.
Hallucination-minimized Data-to-answer Framework for Financial Decision-makers
Authors: Sohini Roychowdhury, Andres Alvarez, Brian Moore, Marko Krema, Maria Paz Gelpi, Federico Martin Rodriguez, Angel Rodriguez, Jose Ramon Cabrejas, Pablo Martinez Serrano, Punit Agrawal, Arijit Mukherjee
Date: 2023-11-09 00:00:00
Tasks: Decision Making, Hallucination, Question Answering, Retrieval

Large Language Models (LLMs) have been applied to build several automation and personalized question-answering prototypes so far. However, scaling such prototypes to robust products with minimized hallucinations or fake responses still remains an open challenge, especially in niche data-table heavy domains such as financial decision making. In this work, we present a novel Langchain-based framework that transforms data tables into hierarchical textual data chunks to enable a wide variety of actionable question answering. First, the user-queries are classified by intention followed by automated retrieval of the most relevant data chunks to generate customized LLM prompts per query. Next, the custom prompts and their responses undergo multi-metric scoring to assess for hallucinations and response confidence. The proposed system is optimized with user-query intention classification, advanced prompting, data scaling capabilities and it achieves over 90% confidence scores for a variety of user-queries responses ranging from {What, Where, Why, How, predict, trend, anomalies, exceptions} that are crucial for financial decision making applications. The proposed data to answers framework can be extended to other analytical domains such as sales and payroll to ensure optimal hallucination control guardrails.
Large Language Models can Strategically Deceive their Users when Put Under Pressure
Authors: Jérémy Scheurer, Mikita Balesni, Marius Hobbhahn
Date: 2023-11-09 00:00:00
Tasks: Management

We demonstrate a situation in which Large Language Models, trained to be helpful, harmless, and honest, can display misaligned behavior and strategically deceive their users about this behavior without being instructed to do so. Concretely, we deploy GPT-4 as an agent in a realistic, simulated environment, where it assumes the role of an autonomous stock trading agent. Within this environment, the model obtains an insider tip about a lucrative stock trade and acts upon it despite knowing that insider trading is disapproved of by company management. When reporting to its manager, the model consistently hides the genuine reasons behind its trading decision. We perform a brief investigation of how this behavior varies under changes to the setting, such as removing model access to a reasoning scratchpad, attempting to prevent the misaligned behavior by changing system instructions, changing the amount of pressure the model is under, varying the perceived risk of getting caught, and making other simple changes to the environment. To our knowledge, this is the first demonstration of Large Language Models trained to be helpful, harmless, and honest, strategically deceiving their users in a realistic situation without direct instructions or training for deception.
Towards Open-Ended Visual Recognition with Large Language Model
Authors: Qihang Yu, Xiaohui Shen, Liang-Chieh Chen
Date: 2023-11-14 00:00:00
Tasks: Language Modeling, Language Modelling, Large Language Model, Novel Concepts, World Knowledge

Localizing and recognizing objects in the open-ended physical world poses a long-standing challenge within the domain of machine perception. Recent methods have endeavored to address the issue by employing a class-agnostic mask (or box) proposal model, complemented by an open-vocabulary classifier (e.g., CLIP) using pre-extracted text embeddings. However, it is worth noting that these open-vocabulary recognition models still exhibit limitations in practical applications. On one hand, they rely on the provision of class names during testing, where the recognition performance heavily depends on this predefined set of semantic classes by users. On the other hand, when training with multiple datasets, human intervention is required to alleviate the label definition conflict between them. In this paper, we introduce the OmniScient Model (OSM), a novel Large Language Model (LLM) based mask classifier, as a straightforward and effective solution to the aforementioned challenges. Specifically, OSM predicts class labels in a generative manner, thus removing the supply of class names during both training and testing. It also enables cross-dataset training without any human interference, exhibiting robust generalization capabilities due to the world knowledge acquired from the LLM. By combining OSM with an off-the-shelf mask proposal model, we present promising results on various benchmarks, and demonstrate its effectiveness in handling novel concepts. Code/model are available at https://github.com/bytedance/OmniScient-Model.
USLR: an open-source tool for unbiased and smooth longitudinal registration of brain MR
Authors: Adrià Casamitjana, Roser Sala-Llonch, Karim Lekadir, Juan Eugenio Iglesias
Date: 2023-11-14 00:00:00
Tasks: Bayesian Inference, Image Segmentation, Semantic Segmentation, Time Series

We present USLR, a computational framework for longitudinal registration of brain MRI scans to estimate nonlinear image trajectories that are smooth across time, unbiased to any timepoint, and robust to imaging artefacts. It operates on the Lie algebra parameterisation of spatial transforms (which is compatible with rigid transforms and stationary velocity fields for nonlinear deformation) and takes advantage of log-domain properties to solve the problem using Bayesian inference. USRL estimates rigid and nonlinear registrations that: (i) bring all timepoints to an unbiased subject-specific space; and (i) compute a smooth trajectory across the imaging time-series. We capitalise on learning-based registration algorithms and closed-form expressions for fast inference. A use-case Alzheimer's disease study is used to showcase the benefits of the pipeline in multiple fronts, such as time-consistent image segmentation to reduce intra-subject variability, subject-specific prediction or population analysis using tensor-based morphometry. We demonstrate that such approach improves upon cross-sectional methods in identifying group differences, which can be helpful in detecting more subtle atrophy levels or in reducing sample sizes in clinical trials. The code is publicly available in https://github.com/acasamitjana/uslr
Rotation-Agnostic Image Representation Learning for Digital Pathology
Authors: Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran Khan, Areej Alsaafin, Ghazal Alabtah, H. R. Tizhoosh
Date: 2023-11-14 00:00:00
Proceeding: CVPR 2024 1
Tasks: Breast Cancer Histology Image Classification, Medical Image Retrieval, Representation Learning, Self-Supervised Learning

This paper addresses complex challenges in histopathological image analysis through three key contributions. Firstly, it introduces a fast patch selection method, FPS, for whole-slide image (WSI) analysis, significantly reducing computational cost while maintaining accuracy. Secondly, it presents PathDino, a lightweight histopathology feature extractor with a minimal configuration of five Transformer blocks and only 9 million parameters, markedly fewer than alternatives. Thirdly, it introduces a rotation-agnostic representation learning paradigm using self-supervised learning, effectively mitigating overfitting. We also show that our compact model outperforms existing state-of-the-art histopathology-specific vision transformers on 12 diverse datasets, including both internal datasets spanning four sites (breast, liver, skin, and colorectal) and seven public datasets (PANDA, CAMELYON16, BRACS, DigestPath, Kather, PanNuke, and WSSS4LUAD). Notably, even with a training dataset of 6 million histopathology patches from The Cancer Genome Atlas (TCGA), our approach demonstrates an average 8.5% improvement in patch-level majority vote performance. These contributions provide a robust framework for enhancing image analysis in digital pathology, rigorously validated through extensive evaluation. Project Page: https://kimialabmayo.github.io/PathDino-Page/
Convolutional Neural Networks Exploiting Attributes of Biological Neurons
Authors: Neeraj Kumar Singh, Nikhil R. Pal
Date: 2023-11-14 00:00:00

In this era of artificial intelligence, deep neural networks like Convolutional Neural Networks (CNNs) have emerged as front-runners, often surpassing human capabilities. These deep networks are often perceived as the panacea for all challenges. Unfortunately, a common downside of these networks is their ''black-box'' character, which does not necessarily mirror the operation of biological neural systems. Some even have millions/billions of learnable (tunable) parameters, and their training demands extensive data and time. Here, we integrate the principles of biological neurons in certain layer(s) of CNNs. Specifically, we explore the use of neuro-science-inspired computational models of the Lateral Geniculate Nucleus (LGN) and simple cells of the primary visual cortex. By leveraging such models, we aim to extract image features to use as input to CNNs, hoping to enhance training efficiency and achieve better accuracy. We aspire to enable shallow networks with a Push-Pull Combination of Receptive Fields (PP-CORF) model of simple cells as the foundation layer of CNNs to enhance their learning process and performance. To achieve this, we propose a two-tower CNN, one shallow tower and the other as ResNet 18. Rather than extracting the features blindly, it seeks to mimic how the brain perceives and extracts features. The proposed system exhibits a noticeable improvement in the performance (on an average of $5\%-10\%$) on CIFAR-10, CIFAR-100, and ImageNet-100 datasets compared to ResNet-18. We also check the efficiency of only the Push-Pull tower of the network.
The Heat is On: Thermal Facial Landmark Tracking
Authors: James Baker
Date: 2023-11-14 00:00:00
Tasks: Landmark Tracking

Facial landmark tracking for thermal images requires tracking certain important regions of subjects' faces, using images from thermal images, which omit lighting and shading, but show the temperatures of their subjects. The fluctuations of heat in particular places reflect physiological changes like bloodflow and perspiration, which can be used to remotely gauge things like anxiety and excitement. Past work in this domain has been limited to only a very limited set of architectures and techniques. This work goes further by trying a comprehensive suit of various models with different components, such as residual connections, channel and feature-wise attention, as well as the practice of ensembling components of the network to work in parallel. The best model integrated convolutional and residual layers followed by a channel-wise self-attention layer, requiring less than 100K parameters.
Level Set KSVD
Authors: Omer Sapir, Iftach Klapp, Nir Sochen
Date: 2023-11-14 00:00:00
Tasks: Dictionary Learning, Image Segmentation, Segmentation, Semantic Segmentation

We present a new algorithm for image segmentation - Level-set KSVD. Level-set KSVD merges the methods of sparse dictionary learning for feature extraction and variational level-set method for image segmentation. Specifically, we use a generalization of the Chan-Vese functional with features learned by KSVD. The motivation for this model is agriculture based. Aerial images are taken in order to detect the spread of fungi in various crops. Our model is tested on such images of cotton fields. The results are compared to other methods.
ARTEMIS: Using GANs with Multiple Discriminators to Generate Art
Authors: James Baker
Date: 2023-11-14 00:00:00
Tasks: Decoder, Diversity

We propose a novel method for generating abstract art. First an autoencoder is trained to encode and decode the style representations of images, which are extracted from source images with a pretrained VGG network. Then, the decoder component of the autoencoder is extracted and used as a generator in a GAN. The generator works with an ensemble of discriminators. Each discriminator takes different style representations of the same images, and the generator is trained to create images that create convincing style representations in order to deceive all of the generators. The generator is also trained to maximize a diversity term. The resulting images had a surreal, geometric quality. We call our approach ARTEMIS (ARTistic Encoder- Multi- Discriminators Including Self-Attention), as it uses the self-attention layers and an encoder-decoder architecture.
Defining the boundaries: challenges and advances in identifying cells in microscopy images
Authors: Nodar Gogoberidze, Beth A. Cimini
Date: 2023-11-14 00:00:00
Tasks: Cell Segmentation, Segmentation

Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be made in tools that rely on classical methods for segmentation, deep learning-based tools increasingly dominate advances in the technology. Specialist models such as Cellpose continue to improve in accuracy and user-friendliness, and segmentation challenges such as the Multi-Modality Cell Segmentation Challenge continue to push innovation in accuracy across widely-varying test data as well as efficiency and usability. Increased attention on documentation, sharing, and evaluation standards are leading to increased user-friendliness and acceleration towards the goal of a truly universal method.
TENT: Connect Language Models with IoT Sensors for Zero-Shot Activity Recognition
Authors: Yunjiao Zhou, Jianfei Yang, Han Zou, Lihua Xie
Date: 2023-11-14 00:00:00
Tasks: Activity Recognition, Contrastive Learning, Human Activity Recognition

Recent achievements in language models have showcased their extraordinary capabilities in bridging visual information with semantic language understanding. This leads us to a novel question: can language models connect textual semantics with IoT sensory signals to perform recognition tasks, e.g., Human Activity Recognition (HAR)? If so, an intelligent HAR system with human-like cognition can be built, capable of adapting to new environments and unseen categories. This paper explores its feasibility with an innovative approach, IoT-sEnsors-language alignmEnt pre-Training (TENT), which jointly aligns textual embeddings with IoT sensor signals, including camera video, LiDAR, and mmWave. Through the IoT-language contrastive learning, we derive a unified semantic feature space that aligns multi-modal features with language embeddings, so that the IoT data corresponds to specific words that describe the IoT data. To enhance the connection between textual categories and their IoT data, we propose supplementary descriptions and learnable prompts that bring more semantic information into the joint feature space. TENT can not only recognize actions that have been seen but also ``guess'' the unseen action by the closest textual words from the feature space. We demonstrate TENT achieves state-of-the-art performance on zero-shot HAR tasks using different modalities, improving the best vision-language models by over 12%.
MeLo: Low-rank Adaptation is Better than Fine-tuning for Medical Image Diagnosis
Authors: Yitao Zhu, Zhenrong Shen, Zihao Zhao, Sheng Wang, Xin Wang, Xiangyu Zhao, Dinggang Shen, Qian Wang
Date: 2023-11-14 00:00:00

The common practice in developing computer-aided diagnosis (CAD) models based on transformer architectures usually involves fine-tuning from ImageNet pre-trained weights. However, with recent advances in large-scale pre-training and the practice of scaling laws, Vision Transformers (ViT) have become much larger and less accessible to medical imaging communities. Additionally, in real-world scenarios, the deployments of multiple CAD models can be troublesome due to problems such as limited storage space and time-consuming model switching. To address these challenges, we propose a new method MeLo (Medical image Low-rank adaptation), which enables the development of a single CAD model for multiple clinical tasks in a lightweight manner. It adopts low-rank adaptation instead of resource-demanding fine-tuning. By fixing the weight of ViT models and only adding small low-rank plug-ins, we achieve competitive results on various diagnosis tasks across different imaging modalities using only a few trainable parameters. Specifically, our proposed method achieves comparable performance to fully fine-tuned ViT models on four distinct medical imaging datasets using about 0.17% trainable parameters. Moreover, MeLo adds only about 0.5MB of storage space and allows for extremely fast model switching in deployment and inference. Our source code and pre-trained weights are available on our website (https://absterzhu.github.io/melo.github.io/).
Uni-COAL: A Unified Framework for Cross-Modality Synthesis and Super-Resolution of MR Images
Authors: Zhiyun Song, Zengxin Qi, Xin Wang, Xiangyu Zhao, Zhenrong Shen, Sheng Wang, Manman Fei, Zhe Wang, Di Zang, Dongdong Chen, Linlin Yao, Qian Wang, Xuehai Wu, Lichi Zhang
Date: 2023-11-14 00:00:00
Tasks: Attribute, Image Generation, MRI Reconstruction, Super-Resolution

Cross-modality synthesis (CMS), super-resolution (SR), and their combination (CMSR) have been extensively studied for magnetic resonance imaging (MRI). Their primary goals are to enhance the imaging quality by synthesizing the desired modality and reducing the slice thickness. Despite the promising synthetic results, these techniques are often tailored to specific tasks, thereby limiting their adaptability to complex clinical scenarios. Therefore, it is crucial to build a unified network that can handle various image synthesis tasks with arbitrary requirements of modality and resolution settings, so that the resources for training and deploying the models can be greatly reduced. However, none of the previous works is capable of performing CMS, SR, and CMSR using a unified network. Moreover, these MRI reconstruction methods often treat alias frequencies improperly, resulting in suboptimal detail restoration. In this paper, we propose a Unified Co-Modulated Alias-free framework (Uni-COAL) to accomplish the aforementioned tasks with a single network. The co-modulation design of the image-conditioned and stochastic attribute representations ensures the consistency between CMS and SR, while simultaneously accommodating arbitrary combinations of input/output modalities and thickness. The generator of Uni-COAL is also designed to be alias-free based on the Shannon-Nyquist signal processing framework, ensuring effective suppression of alias frequencies. Additionally, we leverage the semantic prior of Segment Anything Model (SAM) to guide Uni-COAL, ensuring a more authentic preservation of anatomical structures during synthesis. Experiments on three datasets demonstrate that Uni-COAL outperforms the alternatives in CMS, SR, and CMSR tasks for MR images, which highlights its generalizability to wide-range applications.
Improving Image Captioning via Predicting Structured Concepts
Authors: Ting Wang, Weidong Chen, Yuanhe Tian, Yan Song, Zhendong Mao
Date: 2023-11-14 00:00:00
Tasks: Image Captioning

Having the difficulty of solving the semantic gap between images and texts for the image captioning task, conventional studies in this area paid some attention to treating semantic concepts as a bridge between the two modalities and improved captioning performance accordingly. Although promising results on concept prediction were obtained, the aforementioned studies normally ignore the relationship among concepts, which relies on not only objects in the image, but also word dependencies in the text, so that offers a considerable potential for improving the process of generating good descriptions. In this paper, we propose a structured concept predictor (SCP) to predict concepts and their structures, then we integrate them into captioning, so as to enhance the contribution of visual signals in this task via concepts and further use their relations to distinguish cross-modal semantics for better description generation. Particularly, we design weighted graph convolutional networks (W-GCN) to depict concept relations driven by word dependencies, and then learns differentiated contributions from these concepts for following decoding process. Therefore, our approach captures potential relations among concepts and discriminatively learns different concepts, so that effectively facilitates image captioning with inherited information across modalities. Extensive experiments and their results demonstrate the effectiveness of our approach as well as each proposed module in this work.