pwc-archive/papers-with-abstracts huggingface dataset:
Cheap Lunch for Medical Image Segmentation by Fine-tuning SAM on Few Exemplars
Authors: Weijia Feng, Lingting Zhu, Lequan Yu
Date: 2023-08-27 00:00:00
Tasks: Brain Tumor Segmentation, Image Segmentation, Medical Image Segmentation, Segmentation, Semantic Segmentation, Tumor Segmentation, Zero-shot Generalization

The Segment Anything Model (SAM) has demonstrated remarkable capabilities of scaled-up segmentation models, enabling zero-shot generalization across a variety of domains. By leveraging large-scale foundational models as pre-trained models, it is a natural progression to fine-tune SAM for specific domains to further enhance performances. However, the adoption of foundational models in the medical domain presents a challenge due to the difficulty and expense of labeling sufficient data for adaptation within hospital systems. In this paper, we introduce an efficient and practical approach for fine-tuning SAM using a limited number of exemplars, making it suitable for such scenarios. Our approach combines two established techniques from the literature: an exemplar-guided synthesis module and the widely recognized Low-Rank Adaptation (LoRA) fine-tuning strategy, serving as data-level and model-level attempts respectively. Interestingly, our empirical findings suggest that SAM can be effectively aligned within the medical domain even with few labeled data. We validate our approach through experiments on brain tumor segmentation (BraTS) and multi-organ CT segmentation (Synapse). The comprehensive results underscore the feasibility and effectiveness of such an approach, paving the way for the practical application of SAM in the medical domain.
Detecting Language Model Attacks with Perplexity
Authors: Gabriel Alon, Michael Kamfonas
Date: 2023-08-27 00:00:00
Tasks: Language Modeling, Language Modelling, model

A novel hack involving Large Language Models (LLMs) has emerged, exploiting adversarial suffixes to deceive models into generating perilous responses. Such jailbreaks can trick LLMs into providing intricate instructions to a malicious user for creating explosives, orchestrating a bank heist, or facilitating the creation of offensive content. By evaluating the perplexity of queries with adversarial suffixes using an open-source LLM (GPT-2), we found that they have exceedingly high perplexity values. As we explored a broad range of regular (non-adversarial) prompt varieties, we concluded that false positives are a significant challenge for plain perplexity filtering. A Light-GBM trained on perplexity and token length resolved the false positives and correctly detected most adversarial attacks in the test set.
Large Language Models Streamline Automated Machine Learning for Clinical Studies
Authors: Soroosh Tayebi Arasteh, Tianyu Han, Mahshad Lotfinia, Christiane Kuhl, Jakob Nikolas Kather, Daniel Truhn, Sven Nebelung
Date: 2023-08-27 00:00:00

A knowledge gap persists between machine learning (ML) developers (e.g., data scientists) and practitioners (e.g., clinicians), hampering the full utilization of ML for clinical data analysis. We investigated the potential of the ChatGPT Advanced Data Analysis (ADA), an extension of GPT-4, to bridge this gap and perform ML analyses efficiently. Real-world clinical datasets and study details from large trials across various medical specialties were presented to ChatGPT ADA without specific guidance. ChatGPT ADA autonomously developed state-of-the-art ML models based on the original study's training data to predict clinical outcomes such as cancer development, cancer progression, disease complications, or biomarkers such as pathogenic gene sequences. Following the re-implementation and optimization of the published models, the head-to-head comparison of the ChatGPT ADA-crafted ML models and their respective manually crafted counterparts revealed no significant differences in traditional performance metrics (P>0.071). Strikingly, the ChatGPT ADA-crafted ML models often outperformed their counterparts. In conclusion, ChatGPT ADA offers a promising avenue to democratize ML in medicine by simplifying complex data analyses, yet should enhance, not replace, specialized training and resources, to promote broader applications in medical research and practice.
MARL for Decentralized Electric Vehicle Charging Coordination with V2V Energy Exchange
Authors: Jiarong Fan, Hao Wang, Ariel Liebman
Date: 2023-08-27 00:00:00
Tasks: energy management, Fairness, Management, Multi-agent Reinforcement Learning

Effective energy management of electric vehicle (EV) charging stations is critical to supporting the transport sector's sustainable energy transition. This paper addresses the EV charging coordination by considering vehicle-to-vehicle (V2V) energy exchange as the flexibility to harness in EV charging stations. Moreover, this paper takes into account EV user experiences, such as charging satisfaction and fairness. We propose a Multi-Agent Reinforcement Learning (MARL) approach to coordinate EV charging with V2V energy exchange while considering uncertainties in the EV arrival time, energy price, and solar energy generation. The exploration capability of MARL is enhanced by introducing parameter noise into MARL's neural network models. Experimental results demonstrate the superior performance and scalability of our proposed method compared to traditional optimization baselines. The decentralized execution of the algorithm enables it to effectively deal with partial system faults in the charging station.
Depth self-supervision for single image novel view synthesis
Authors: Giovanni Minelli, Matteo Poggi, Samuele Salti
Date: 2023-08-27 00:00:00
Tasks: Decoder, Depth Estimation, Novel View Synthesis

In this paper, we tackle the problem of generating a novel image from an arbitrary viewpoint given a single frame as input. While existing methods operating in this setup aim at predicting the target view depth map to guide the synthesis, without explicit supervision over such a task, we jointly optimize our framework for both novel view synthesis and depth estimation to unleash the synergy between the two at its best. Specifically, a shared depth decoder is trained in a self-supervised manner to predict depth maps that are consistent across the source and target views. Our results demonstrate the effectiveness of our approach in addressing the challenges of both tasks allowing for higher-quality generated images, as well as more accurate depth for the target viewpoint.
Unified and Dynamic Graph for Temporal Character Grouping in Long Videos
Authors: Xiujun Shu, Wei Wen, Liangsheng Xu, Ruizhi Qiao, Taian Guo, Hanjun Li, Bei Gan, Xiao Wang, Xing Sun
Date: 2023-08-27 00:00:00
Tasks: Clustering, Graph Clustering

Video temporal character grouping locates appearing moments of major characters within a video according to their identities. To this end, recent works have evolved from unsupervised clustering to graph-based supervised clustering. However, graph methods are built upon the premise of fixed affinity graphs, bringing many inexact connections. Besides, they extract multi-modal features with kinds of models, which are unfriendly to deployment. In this paper, we present a unified and dynamic graph (UniDG) framework for temporal character grouping. This is accomplished firstly by a unified representation network that learns representations of multiple modalities within the same space and still preserves the modality's uniqueness simultaneously. Secondly, we present a dynamic graph clustering where the neighbors of different quantities are dynamically constructed for each node via a cyclic matching strategy, leading to a more reliable affinity graph. Thirdly, a progressive association method is introduced to exploit spatial and temporal contexts among different modalities, allowing multi-modal clustering results to be well fused. As current datasets only provide pre-extracted features, we evaluate our UniDG method on a collected dataset named MTCG, which contains each character's appearing clips of face and body and speaking voice tracks. We also evaluate our key components on existing clustering and retrieval datasets to verify the generalization ability. Experimental results manifest that our method can achieve promising results and outperform several state-of-the-art approaches.
Rethinking Exemplars for Continual Semantic Segmentation in Endoscopy Scenes: Entropy-based Mini-Batch Pseudo-Replay
Authors: Guankun Wang, Long Bai, Yanan Wu, Tong Chen, Hongliang Ren
Date: 2023-08-27 00:00:00
Tasks: Continual Learning, Continual Semantic Segmentation, Image Segmentation, Representation Learning, Semantic Segmentation

Endoscopy is a widely used technique for the early detection of diseases or robotic-assisted minimally invasive surgery (RMIS). Numerous deep learning (DL)-based research works have been developed for automated diagnosis or processing of endoscopic view. However, existing DL models may suffer from catastrophic forgetting. When new target classes are introduced over time or cross institutions, the performance of old classes may suffer severe degradation. More seriously, data privacy and storage issues may lead to the unavailability of old data when updating the model. Therefore, it is necessary to develop a continual learning (CL) methodology to solve the problem of catastrophic forgetting in endoscopic image segmentation. To tackle this, we propose a Endoscopy Continual Semantic Segmentation (EndoCSS) framework that does not involve the storage and privacy issues of exemplar data. The framework includes a mini-batch pseudo-replay (MB-PR) mechanism and a self-adaptive noisy cross-entropy (SAN-CE) loss. The MB-PR strategy circumvents privacy and storage issues by generating pseudo-replay images through a generative model. Meanwhile, the MB-PR strategy can also correct the model deviation to the replay data and current training data, which is aroused by the significant difference in the amount of current and replay images. Therefore, the model can perform effective representation learning on both new and old tasks. SAN-CE loss can help model fitting by adjusting the model's output logits, and also improve the robustness of training. Extensive continual semantic segmentation (CSS) experiments on public datasets demonstrate that our method can robustly and effectively address the catastrophic forgetting brought by class increment in endoscopy scenes. The results show that our framework holds excellent potential for real-world deployment in a streaming learning manner.
The inverse problem for neural networks
Authors: Marcelo Forets, Christian Schilling
Date: 2023-08-27 00:00:00

We study the problem of computing the preimage of a set under a neural network with piecewise-affine activation functions. We recall an old result that the preimage of a polyhedral set is again a union of polyhedral sets and can be effectively computed. We show several applications of computing the preimage for analysis and interpretability of neural networks.
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records
Authors: Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo P. Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah
Date: 2023-08-27 00:00:00
Tasks: 2k, Instruction Following, Question Answering, Text Generation

The ability of large language models (LLMs) to follow natural language instructions with human-level fluency suggests many opportunities in healthcare to reduce administrative burden and improve quality of care. However, evaluating LLMs on realistic text generation tasks for healthcare remains challenging. Existing question answering datasets for electronic health record (EHR) data fail to capture the complexity of information needs and documentation burdens experienced by clinicians. To address these challenges, we introduce MedAlign, a benchmark dataset of 983 natural language instructions for EHR data. MedAlign is curated by 15 clinicians (7 specialities), includes clinician-written reference responses for 303 instructions, and provides 276 longitudinal EHRs for grounding instruction-response pairs. We used MedAlign to evaluate 6 general domain LLMs, having clinicians rank the accuracy and quality of each LLM response. We found high error rates, ranging from 35% (GPT-4) to 68% (MPT-7B-Instruct), and an 8.3% drop in accuracy moving from 32k to 2k context lengths for GPT-4. Finally, we report correlations between clinician rankings and automated natural language generation metrics as a way to rank LLMs without human review. We make MedAlign available under a research data use agreement to enable LLM evaluations on tasks aligned with clinician needs and preferences.
Practical Edge Detection via Robust Collaborative Learning
Authors: Yuanbin Fu, Xiaojie Guo
Date: 2023-08-27 00:00:00
Tasks: Edge Detection

Edge detection, as a core component in a wide range of visionoriented tasks, is to identify object boundaries and prominent edges in natural images. An edge detector is desired to be both efficient and accurate for practical use. To achieve the goal, two key issues should be concerned: 1) How to liberate deep edge models from inefficient pre-trained backbones that are leveraged by most existing deep learning methods, for saving the computational cost and cutting the model size; and 2) How to mitigate the negative influence from noisy or even wrong labels in training data, which widely exist in edge detection due to the subjectivity and ambiguity of annotators, for the robustness and accuracy. In this paper, we attempt to simultaneously address the above problems via developing a collaborative learning based model, termed PEdger. The principle behind our PEdger is that, the information learned from different training moments and heterogeneous (recurrent and non recurrent in this work) architectures, can be assembled to explore robust knowledge against noisy annotations, even without the help of pre-training on extra data. Extensive ablation studies together with quantitative and qualitative experimental comparisons on the BSDS500 and NYUD datasets are conducted to verify the effectiveness of our design, and demonstrate its superiority over other competitors in terms of accuracy, speed, and model size. Codes can be found at https://github.co/ForawardStar/PEdger.
Pruning the Unlabeled Data to Improve Semi-Supervised Learning
Authors: Guy Hacohen, Daphna Weinshall
Date: 2023-08-27 00:00:00
Tasks: image-classification, Image Classification

In the domain of semi-supervised learning (SSL), the conventional approach involves training a learner with a limited amount of labeled data alongside a substantial volume of unlabeled data, both drawn from the same underlying distribution. However, for deep learning models, this standard practice may not yield optimal results. In this research, we propose an alternative perspective, suggesting that distributions that are more readily separable could offer superior benefits to the learner as compared to the original distribution. To achieve this, we present PruneSSL, a practical technique for selectively removing examples from the original unlabeled dataset to enhance its separability. We present an empirical study, showing that although PruneSSL reduces the quantity of available training data for the learner, it significantly improves the performance of various competitive SSL algorithms, thereby achieving state-of-the-art results across several image classification tasks.
PECon: Contrastive Pretraining to Enhance Feature Alignment between CT and EHR Data for Improved Pulmonary Embolism Diagnosis
Authors: Santosh Sanjeev, Salwa K. Al Khatib, Mai A. Shaaban, Ibrahim Almakky, Vijay Ram Papineni, Mohammad Yaqub
Date: 2023-08-27 00:00:00
Tasks: Computed Tomography (CT), Contrastive Learning, Pulmonary Embolism Detection

Previous deep learning efforts have focused on improving the performance of Pulmonary Embolism(PE) diagnosis from Computed Tomography (CT) scans using Convolutional Neural Networks (CNN). However, the features from CT scans alone are not always sufficient for the diagnosis of PE. CT scans along with electronic heath records (EHR) can provide a better insight into the patients condition and can lead to more accurate PE diagnosis. In this paper, we propose Pulmonary Embolism Detection using Contrastive Learning (PECon), a supervised contrastive pretraining strategy that employs both the patients CT scans as well as the EHR data, aiming to enhance the alignment of feature representations between the two modalities and leverage information to improve the PE diagnosis. In order to achieve this, we make use of the class labels and pull the sample features of the same class together, while pushing away those of the other class. Results show that the proposed work outperforms the existing techniques and achieves state-of-the-art performance on the RadFusion dataset with an F1-score of 0.913, accuracy of 0.90 and an AUROC of 0.943. Furthermore, we also explore the explainability of our approach in comparison to other methods. Our code is publicly available at https://github.com/BioMedIA-MBZUAI/PECon.
Multi-plane denoising diffusion-based dimensionality expansion for 2D-to-3D reconstruction of microstructures with harmonized sampling
Authors: Kang-Hyun Lee, Gun Jin Yun
Date: 2023-08-27 00:00:00
Tasks: 3D Reconstruction, Denoising

Acquiring reliable microstructure datasets is a pivotal step toward the systematic design of materials with the aid of integrated computational materials engineering (ICME) approaches. However, obtaining three-dimensional (3D) microstructure datasets is often challenging due to high experimental costs or technical limitations, while acquiring two-dimensional (2D) micrographs is comparatively easier. To deal with this issue, this study proposes a novel framework for 2D-to-3D reconstruction of microstructures called Micro3Diff using diffusion-based generative models (DGMs). Specifically, this approach solely requires pre-trained DGMs for the generation of 2D samples, and dimensionality expansion (2D-to-3D) takes place only during the generation process (i.e., reverse diffusion process). The proposed framework incorporates a new concept referred to as multi-plane denoising diffusion, which transforms noisy samples (i.e., latent variables) from different planes into the data structure while maintaining spatial connectivity in 3D space. Furthermore, a harmonized sampling process is developed to address possible deviations from the reverse Markov chain of DGMs during the dimensionality expansion. Combined, we demonstrate the feasibility of Micro3Diff in reconstructing 3D samples with connected slices that maintain morphologically equivalence to the original 2D images. To validate the performance of Micro3Diff, various types of microstructures (synthetic and experimentally observed) are reconstructed, and the quality of the generated samples is assessed both qualitatively and quantitatively. The successful reconstruction outcomes inspire the potential utilization of Micro3Diff in upcoming ICME applications while achieving a breakthrough in comprehending and manipulating the latent space of DGMs.
Confucius: Iterative Tool Learning from Introspection Feedback by Easy-to-Difficult Curriculum
Authors: Shen Gao, Zhengliang Shi, Minghang Zhu, Bowen Fang, Xin Xin, Pengjie Ren, Zhumin Chen, Jun Ma, Zhaochun Ren
Date: 2023-08-27 00:00:00

Augmenting large language models (LLMs) with external tools has emerged as a promising approach to extending the capability of LLMs. Although some works employ open-source LLMs for the tool learning task, most of them are trained in a controlled environment in which LLMs only learn to execute the human-provided tools. However, selecting proper tools from the large toolset is also a crucial ability for the tool learning model to be applied in real-world applications. Existing methods usually directly employ self-instruction methods to train the model, which ignores differences in tool complexity. In this paper, we propose the Confucius, a novel tool learning framework to train LLM to use complicated tools in real-world scenarios, which contains two main phases: (1) We first propose a multi-stage learning method to teach the LLM to use various tools from an easy-to-difficult curriculum; (2) thenceforth, we propose the Iterative Self-instruct from Introspective Feedback (ISIF) to dynamically construct the dataset to improve the ability to use the complicated tool. Extensive experiments conducted on both controlled and real-world settings demonstrate the superiority of our tool learning framework in the real-world application scenarios compared to both tuning-free (e.g. ChatGPT, Claude) and tuning-based baselines (e.g. GPT4Tools).
Text Matching Improves Sequential Recommendation by Reducing Popularity Biases
Authors: Zhenghao Liu, Sen Mei, Chenyan Xiong, Xiaohua LI, Shi Yu, Zhiyuan Liu, Yu Gu, Ge Yu
Date: 2023-08-27 00:00:00
Tasks: Recommendation Systems, Sequential Recommendation, Text Matching

This paper proposes Text mAtching based SequenTial rEcommendation model (TASTE), which maps items and users in an embedding space and recommends items by matching their text representations. TASTE verbalizes items and user-item interactions using identifiers and attributes of items. To better characterize user behaviors, TASTE additionally proposes an attention sparsity method, which enables TASTE to model longer user-item interactions by reducing the self-attention computations during encoding. Our experiments show that TASTE outperforms the state-of-the-art methods on widely used sequential recommendation datasets. TASTE alleviates the cold start problem by representing long-tail items using full-text modeling and bringing the benefits of pretrained language models to recommendation systems. Our further analyses illustrate that TASTE significantly improves the recommendation accuracy by reducing the popularity bias of previous item id based recommendation models and returning more appropriate and text-relevant items to satisfy users. All codes are available at https://github.com/OpenMatch/TASTE.
Revolutionizing Disease Diagnosis: A Microservices-Based Architecture for Privacy-Preserving and Efficient IoT Data Analytics Using Federated Learning
Authors: Safa Ben Atitallah, Maha Driss, Henda Ben Ghezala
Date: 2023-08-27 00:00:00
Tasks: Distributed Computing, Federated Learning, Pneumonia Detection, Privacy Preserving, Transfer Learning

Deep learning-based disease diagnosis applications are essential for accurate diagnosis at various disease stages. However, using personal data exposes traditional centralized learning systems to privacy concerns. On the other hand, by positioning processing resources closer to the device and enabling more effective data analyses, a distributed computing paradigm has the potential to revolutionize disease diagnosis. Scalable architectures for data analytics are also crucial in healthcare, where data analytics results must have low latency and high dependability and reliability. This study proposes a microservices-based approach for IoT data analytics systems to satisfy privacy and performance requirements by arranging entities into fine-grained, loosely connected, and reusable collections. Our approach relies on federated learning, which can increase disease diagnosis accuracy while protecting data privacy. Additionally, we employ transfer learning to obtain more efficient models. Using more than 5800 chest X-ray images for pneumonia detection from a publicly available dataset, we ran experiments to assess the effectiveness of our approach. Our experiments reveal that our approach performs better in identifying pneumonia than other cutting-edge technologies, demonstrating our approach's promising potential detection performance.