pwc-archive/papers-with-abstracts huggingface dataset:
FedNC: A Secure and Efficient Federated Learning Method with Network Coding
Authors: Yuchen Shi, Zheqi Zhu, Pingyi Fan, Khaled B. Letaief, Chenghui Peng
Date: 2023-05-05 00:00:00
Tasks: Federated Learning

Federated Learning (FL) is a promising distributed learning mechanism which still faces two major challenges, namely privacy breaches and system efficiency. In this work, we reconceptualize the FL system from the perspective of network information theory, and formulate an original FL communication framework, FedNC, which is inspired by Network Coding (NC). The main idea of FedNC is mixing the information of the local models by making random linear combinations of the original parameters, before uploading for further aggregation. Due to the benefits of the coding scheme, both theoretical and experimental analysis indicate that FedNC improves the performance of traditional FL in several important ways, including security, efficiency, and robustness. To the best of our knowledge, this is the first framework where NC is introduced in FL. As FL continues to evolve within practical network frameworks, more variants can be further designed based on FedNC.
Demystifying Softmax Gating Function in Gaussian Mixture of Experts
Date: 2023-05-05 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Mixture-of-Experts, parameter estimation

Understanding the parameter estimation of softmax gating Gaussian mixture of experts has remained a long-standing open problem in the literature. It is mainly due to three fundamental theoretical challenges associated with the softmax gating function: (i) the identifiability only up to the translation of parameters; (ii) the intrinsic interaction via partial differential equations between the softmax gating and the expert functions in the Gaussian density; (iii) the complex dependence between the numerator and denominator of the conditional density of softmax gating Gaussian mixture of experts. We resolve these challenges by proposing novel Voronoi loss functions among parameters and establishing the convergence rates of maximum likelihood estimator (MLE) for solving parameter estimation in these models. When the true number of experts is unknown and over-specified, our findings show a connection between the convergence rate of the MLE and a solvability problem of a system of polynomial equations.
Data-driven and Physics Informed Modelling of Chinese Hamster Ovary Cell Bioreactors
Authors: Tianqi Cui, Tom S. Bertalan, Nelson Ndahiro, Pratik Khare, Michael Betenbaugh, Costas Maranas, Ioannis G. Kevrekidis
Date: 2023-05-05 00:00:00
Tasks: Cultural Vocal Bursts Intensity Prediction

Fed-batch culture is an established operation mode for the production of biologics using mammalian cell cultures. Quantitative modeling integrates both kinetics for some key reaction steps and optimization-driven metabolic flux allocation, using flux balance analysis; this is known to lead to certain mathematical inconsistencies. Here, we propose a physically-informed data-driven hybrid model (a "gray box") to learn models of the dynamical evolution of Chinese Hamster Ovary (CHO) cell bioreactors from process data. The approach incorporates physical laws (e.g. mass balances) as well as kinetic expressions for metabolic fluxes. Machine learning (ML) is then used to (a) directly learn evolution equations (black-box modelling); (b) recover unknown physical parameters ("white-box" parameter fitting) or -- importantly -- (c) learn partially unknown kinetic expressions (gray-box modelling). We encode the convex optimization step of the overdetermined metabolic biophysical system as a differentiable, feed-forward layer into our architectures, connecting partial physical knowledge with data-driven machine learning.
PMP: Learning to Physically Interact with Environments using Part-wise Motion Priors
Authors: Jinseok Bae, Jungdam Won, Donggeun Lim, Cheol-Hui Min, Young Min Kim
Date: 2023-05-05 00:00:00

We present a method to animate a character incorporating multiple part-wise motion priors (PMP). While previous works allow creating realistic articulated motions from reference data, the range of motion is largely limited by the available samples. Especially for the interaction-rich scenarios, it is impractical to attempt acquiring every possible interacting motion, as the combination of physical parameters increases exponentially. The proposed PMP allows us to assemble multiple part skills to animate a character, creating a diverse set of motions with different combinations of existing data. In our pipeline, we can train an agent with a wide range of part-wise priors. Therefore, each body part can obtain a kinematic insight of the style from the motion captures, or at the same time extract dynamics-related information from the additional part-specific simulation. For example, we can first train a general interaction skill, e.g. grasping, only for the dexterous part, and then combine the expert trajectories from the pre-trained agent with the kinematic priors of other limbs. Eventually, our whole-body agent learns a novel physical interaction skill even with the absence of the object trajectories in the reference motion sequence.
Carbon Price Forecasting with Quantile Regression and Feature Selection
Authors: Tianqi Pang, Kehui Tan, Chenyou Fan
Date: 2023-05-05 00:00:00
Tasks: feature selection, quantile regression, regression

Carbon futures has recently emerged as a novel financial asset in the trading markets such as the European Union and China. Monitoring the trend of the carbon price has become critical for both national policy-making as well as industrial manufacturing planning. However, various geopolitical, social, and economic factors can impose substantial influence on the carbon price. Due to its volatility and non-linearity, predicting accurate carbon prices is generally a difficult task. In this study, we propose to improve carbon price forecasting with several novel practices. First, we collect various influencing factors, including commodity prices, export volumes such as oil and natural gas, and prosperity indices. Then we select the most significant factors and disclose their optimal grouping for explainability. Finally, we use the Sparse Quantile Group Lasso and Adaptive Sparse Quantile Group Lasso for robust price predictions. We demonstrate through extensive experimental studies that our proposed methods outperform existing ones. Also, our quantile predictions provide a complete profile of future prices at different levels, which better describes the distributions of the carbon market.
Structural Group Unfairness: Measurement and Mitigation by means of the Effective Resistance
Authors: Adrian Arnaiz-Rodriguez, Georgina Curto, Nuria Oliver
Date: 2023-05-05 00:00:00
Tasks: Attribute, Link Prediction

Social networks contribute to the distribution of social capital, defined as the relationships, norms of trust and reciprocity within a community or society that facilitate cooperation and collective action. Therefore, better positioned members in a social network benefit from faster access to diverse information and higher influence on information dissemination. A variety of methods have been proposed in the literature to measure social capital at an individual level. However, there is a lack of methods to quantify social capital at a group level, which is particularly important when the groups are defined on the grounds of protected attributes. To fill this gap, we propose to measure the social capital of a group of nodes by means of the effective resistance and emphasize the importance of considering the entire network topology. Grounded in spectral graph theory, we introduce three effective resistance-based measures of group social capital, namely group isolation, group diameter and group control, where the groups are defined according to the value of a protected attribute. We denote the social capital disparity among different groups in a network as structural group unfairness, and propose to mitigate it by means of a budgeted edge augmentation heuristic that systematically increases the social capital of the most disadvantaged group. In experiments on real-world networks, we uncover significant levels of structural group unfairness when using gender as the protected attribute, with females being the most disadvantaged group in comparison to males. We also illustrate how our proposed edge augmentation approach is able to not only effectively mitigate the structural group unfairness but also increase the social capital of all groups in the network.
All models are local: time to replace external validation with recurrent local validation
Authors: Alex Youssef, Michael Pencina, Anshul Thakur, Tingting Zhu, David Clifton, Nigam H. Shah
Date: 2023-05-05 00:00:00
Tasks: All

External validation is often recommended to ensure the generalizability of ML models. However, it neither guarantees generalizability nor equates to a model's clinical usefulness (the ultimate goal of any clinical decision-support tool). External validation is misaligned with current healthcare ML needs. First, patient data changes across time, geography, and facilities. These changes create significant volatility in the performance of a single fixed model (especially for deep learning models, which dominate clinical ML). Second, newer ML techniques, current market forces, and updated regulatory frameworks are enabling frequent updating and monitoring of individual deployed model instances. We submit that external validation is insufficient to establish ML models' safety or utility. Proposals to fix the external validation paradigm do not go far enough. Continued reliance on it as the ultimate test is likely to lead us astray. We propose the MLOps-inspired paradigm of recurring local validation as an alternative that ensures the validity of models while protecting against performance-disruptive data variability. This paradigm relies on site-specific reliability tests before every deployment, followed by regular and recurrent checks throughout the life cycle of the deployed algorithm. Initial and recurrent reliability tests protect against performance-disruptive distribution shifts, and concept drifts that jeopardize patient safety.
Enhancing Pashto Text Classification using Language Processing Techniques for Single And Multi-Label Analysis
Authors: Mursal Dawodi, Jawid Ahmad Baktash
Date: 2023-05-04 00:00:00
Tasks: Classification, text-classification, Text Classification

Text classification has become a crucial task in various fields, leading to a significant amount of research on developing automated text classification systems for national and international languages. However, there is a growing need for automated text classification systems that can handle local languages. This study aims to establish an automated classification system for Pashto text. To achieve this goal, we constructed a dataset of Pashto documents and applied various models, including statistical and neural machine learning models such as DistilBERT-base-multilingual-cased, Multilayer Perceptron, Support Vector Machine, K Nearest Neighbor, decision tree, Gaussian na\"ive Bayes, multinomial na\"ive Bayes, random forest, and logistic regression, to identify the most effective approach. We also evaluated two different feature extraction methods, bag of words and Term Frequency Inverse Document Frequency. The study achieved an average testing accuracy rate of 94% using the MLP classification algorithm and TFIDF feature extraction method in single-label multiclass classification. Similarly, MLP+TFIDF yielded the best results, with an F1-measure of 0.81. Furthermore, the use of pre-trained language representation models, such as DistilBERT, showed promising results for Pashto text classification; however, the study highlights the importance of developing a specific tokenizer for a particular language to achieve reasonable results.
Emulation Learning for Neuromimetic Systems
Authors: Zexin Sun, John Baillieul
Date: 2023-05-04 00:00:00
Tasks: Model Predictive Control, Quantization, Transfer Learning

Building on our recent research on neural heuristic quantization systems, results on learning quantized motions and resilience to channel dropouts are reported. We propose a general emulation problem consistent with the neuromimetic paradigm. This optimal quantization problem can be solved by model predictive control (MPC), but because the optimization step involves integer programming, the approach suffers from combinatorial complexity when the number of input channels becomes large. Even if we collect data points to train a neural network simultaneously, collection of training data and the training itself are still time-consuming. Therefore, we propose a general Deep Q Network (DQN) algorithm that can not only learn the trajectory but also exhibit the advantages of resilience to channel dropout. Furthermore, to transfer the model to other emulation problems, a mapping-based transfer learning approach can be used directly on the current model to obtain the optimal direction for the new emulation problems.
A Generative Modeling Framework for Inferring Families of Biomechanical Constitutive Laws in Data-Sparse Regimes
Authors: Minglang Yin, Zongren Zou, Enrui Zhang, Cristina Cavinato, Jay D. Humphrey, George Em Karniadakis
Date: 2023-05-04 00:00:00
Tasks: Bayesian Inference, Generative Adversarial Network

Quantifying biomechanical properties of the human vasculature could deepen our understanding of cardiovascular diseases. Standard nonlinear regression in constitutive modeling requires considerable high-quality data and an explicit form of the constitutive model as prior knowledge. By contrast, we propose a novel approach that combines generative deep learning with Bayesian inference to efficiently infer families of constitutive relationships in data-sparse regimes. Inspired by the concept of functional priors, we develop a generative adversarial network (GAN) that incorporates a neural operator as the generator and a fully-connected neural network as the discriminator. The generator takes a vector of noise conditioned on measurement data as input and yields the predicted constitutive relationship, which is scrutinized by the discriminator in the following step. We demonstrate that this framework can accurately estimate means and standard deviations of the constitutive relationships of the murine aorta using data collected either from model-generated synthetic data or ex vivo experiments for mice with genetic deficiencies. In addition, the framework learns priors of constitutive models without explicitly knowing their functional form, providing a new model-agnostic approach to learning hidden constitutive behaviors from data.
Communication-Efficient Graph Neural Networks with Probabilistic Neighborhood Expansion Analysis and Caching
Authors: Tim Kaler, Alexandros-Stavros Iliopoulos, Philip Murzynowski, Tao B. Schardl, Charles E. Leiserson, Jie Chen
Date: 2023-05-04 00:00:00
Tasks: GPU, Recommendation Systems

Training and inference with graph neural networks (GNNs) on massive graphs has been actively studied since the inception of GNNs, owing to the widespread use and success of GNNs in applications such as recommendation systems and financial forensics. This paper is concerned with minibatch training and inference with GNNs that employ node-wise sampling in distributed settings, where the necessary partitioning of vertex features across distributed storage causes feature communication to become a major bottleneck that hampers scalability. To significantly reduce the communication volume without compromising prediction accuracy, we propose a policy for caching data associated with frequently accessed vertices in remote partitions. The proposed policy is based on an analysis of vertex-wise inclusion probabilities (VIP) during multi-hop neighborhood sampling, which may expand the neighborhood far beyond the partition boundaries of the graph. VIP analysis not only enables the elimination of the communication bottleneck, but it also offers a means to organize in-memory data by prioritizing GPU storage for the most frequently accessed vertex features. We present SALIENT++, which extends the prior state-of-the-art SALIENT system to work with partitioned feature data and leverages the VIP-driven caching policy. SALIENT++ retains the local training efficiency and scalability of SALIENT by using a deep pipeline and drastically reducing communication volume while consuming only a fraction of the storage required by SALIENT. We provide experimental results with the Open Graph Benchmark data sets and demonstrate that training a 3-layer GraphSAGE model with SALIENT++ on 8 single-GPU machines is 7.1 faster than with SALIENT on 1 single-GPU machine, and 12.7 faster than with DistDGL on 8 single-GPU machines.
CAMEL: Co-Designing AI Models and Embedded DRAMs for Efficient On-Device Learning
Authors: Sai Qian Zhang, Thierry Tambe, Nestor Cuevas, Gu-Yeon Wei, David Brooks
Date: 2023-05-04 00:00:00

On-device learning allows AI models to adapt to user data, thereby enhancing service quality on edge platforms. However, training AI on resource-limited devices poses significant challenges due to the demanding computing workload and the substantial memory consumption and data access required by deep neural networks (DNNs). To address these issues, we propose utilizing embedded dynamic random-access memory (eDRAM) as the primary storage medium for transient training data. In comparison to static random-access memory (SRAM), eDRAM provides higher storage density and lower leakage power, resulting in reduced access cost and power leakage. Nevertheless, to maintain the integrity of the stored data, periodic power-hungry refresh operations could potentially degrade system performance. To minimize the occurrence of expensive eDRAM refresh operations, it is beneficial to shorten the lifetime of stored data during the training process. To achieve this, we adopt the principles of algorithm and hardware co-design, introducing a family of reversible DNN architectures that effectively decrease data lifetime and storage costs throughout training. Additionally, we present a highly efficient on-device training engine named \textit{CAMEL}, which leverages eDRAM as the primary on-chip memory. This engine enables efficient on-device training with significantly reduced memory usage and off-chip DRAM traffic while maintaining superior training accuracy. We evaluate our CAMEL system on multiple DNNs with different datasets, demonstrating a $2.5\times$ speedup of the training process and $2.8\times$ training energy savings than the other baseline hardware platforms.
Influence of various text embeddings on clustering performance in NLP
Authors: Rohan Saha
Date: 2023-05-04 00:00:00
Tasks: Clustering, Text Clustering

With the advent of e-commerce platforms, reviews are crucial for customers to assess the credibility of a product. The star ratings do not always match the review text written by the customer. For example, a three star rating (out of five) may be incongruous with the review text, which may be more suitable for a five star review. A clustering approach can be used to relabel the correct star ratings by grouping the text reviews into individual groups. In this work, we explore the task of choosing different text embeddings to represent these reviews and also explore the impact the embedding choice has on the performance of various classes of clustering algorithms. We use contextual (BERT) and non-contextual (Word2Vec) text embeddings to represent the text and measure their impact of three classes on clustering algorithms - partitioning based (KMeans), single linkage agglomerative hierarchical, and density based (DBSCAN and HDBSCAN), each with various experimental settings. We use the silhouette score, adjusted rand index score, and cluster purity score metrics to evaluate the performance of the algorithms and discuss the impact of different embeddings on the clustering performance. Our results indicate that the type of embedding chosen drastically affects the performance of the algorithm, the performance varies greatly across different types of clustering algorithms, no embedding type is better than the other, and DBSCAN outperforms KMeans and single linkage agglomerative clustering but also labels more data points as outliers. We provide a thorough comparison of the performances of different algorithms and provide numerous ideas to foster further research in the domain of text clustering.
Contrastive losses as generalized models of global epistasis
Authors: David H. Brookes, Jakub Otwinowski, Sam Sinai
Date: 2023-05-04 00:00:00

Fitness functions map large combinatorial spaces of biological sequences to properties of interest. Inferring these multimodal functions from experimental data is a central task in modern protein engineering. Global epistasis models are an effective and physically-grounded class of models for estimating fitness functions from observed data. These models assume that a sparse latent function is transformed by a monotonic nonlinearity to emit measurable fitness. Here we demonstrate that minimizing supervised contrastive loss functions, such as the Bradley-Terry loss, is a simple and flexible technique for extracting the sparse latent function implied by global epistasis. We argue by way of a fitness-epistasis uncertainty principle that the nonlinearities in global epistasis models can produce observed fitness functions that do not admit sparse representations, and thus may be inefficient to learn from observations when using a Mean Squared Error (MSE) loss (a common practice). We show that contrastive losses are able to accurately estimate a ranking function from limited data even in regimes where MSE is ineffective and validate the practical utility of this insight by demonstrating that contrastive loss functions result in consistently improved performance on benchmark tasks.
Distributing Synergy Functions: Unifying Game-Theoretic Interaction Methods for Machine-Learning Explainability
Authors: Daniel Lundstrom, Meisam Razaviyayn
Date: 2023-05-04 00:00:00
Tasks: Decision Making, Fairness

Deep learning has revolutionized many areas of machine learning, from computer vision to natural language processing, but these high-performance models are generally "black box." Explaining such models would improve transparency and trust in AI-powered decision making and is necessary for understanding other practical needs such as robustness and fairness. A popular means of enhancing model transparency is to quantify how individual inputs contribute to model outputs (called attributions) and the magnitude of interactions between groups of inputs. A growing number of these methods import concepts and results from game theory to produce attributions and interactions. This work presents a unifying framework for game-theory-inspired attribution and $k^\text{th}$-order interaction methods. We show that, given modest assumptions, a unique full account of interactions between features, called synergies, is possible in the continuous input setting. We identify how various methods are characterized by their policy of distributing synergies. We also demonstrate that gradient-based methods are characterized by their actions on monomials, a type of synergy function, and introduce unique gradient-based methods. We show that the combination of various criteria uniquely defines the attribution/interaction methods. Thus, the community needs to identify goals and contexts when developing and employing attribution and interaction methods.