pwc-archive/papers-with-abstracts huggingface dataset:
Combining propensity score methods with variational autoencoders for generating synthetic data in presence of latent sub-groups
Authors: Kiana Farhadyar, Federico Bonofiglio, Maren Hackenberg, Daniela Zoeller, Harald Binder
Date: 2023-12-12 00:00:00
Tasks: Synthetic Data Generation

In settings requiring synthetic data generation based on a clinical cohort, e.g., due to data protection regulations, heterogeneity across individuals might be a nuisance that we need to control or faithfully preserve. The sources of such heterogeneity might be known, e.g., as indicated by sub-groups labels, or might be unknown and thus reflected only in properties of distributions, such as bimodality or skewness. We investigate how such heterogeneity can be preserved and controlled when obtaining synthetic data from variational autoencoders (VAEs), i.e., a generative deep learning technique that utilizes a low-dimensional latent representation. To faithfully reproduce unknown heterogeneity reflected in marginal distributions, we propose to combine VAEs with pre-transformations. For dealing with known heterogeneity due to sub-groups, we complement VAEs with models for group membership, specifically from propensity score regression. The evaluation is performed with a realistic simulation design that features sub-groups and challenging marginal distributions. The proposed approach faithfully recovers the latter, compared to synthetic data approaches that focus purely on marginal distributions. Propensity scores add complementary information, e.g., when visualized in the latent space, and enable sampling of synthetic data with or without sub-group specific characteristics. We also illustrate the proposed approach with real data from an international stroke trial that exhibits considerable distribution differences between study sites, in addition to bimodality. These results indicate that describing heterogeneity by statistical approaches, such as propensity score regression, might be more generally useful for complementing generative deep learning for obtaining synthetic data that faithfully reflects structure from clinical cohorts.
Incremental hierarchical text clustering methods: a review
Authors: Fernando Simeone, Maik Olher Chaves, Ahmed Esmin
Date: 2023-12-12 00:00:00
Tasks: Clustering, Hierarchical Text Clustering, Text Clustering

The growth in Internet usage has contributed to a large volume of continuously available data, and has created the need for automatic and efficient organization of the data. In this context, text clustering techniques are significant because they aim to organize documents according to their characteristics. More specifically, hierarchical and incremental clustering techniques can organize dynamic data in a hierarchical form, thus guaranteeing that this organization is updated and its exploration is facilitated. Based on the relevance and contemporary nature of the field, this study aims to analyze various hierarchical and incremental clustering techniques; the main contribution of this research is the organization and comparison of the techniques used by studies published between 2010 and 2018 that aimed to texts documents clustering. We describe the principal concepts related to the challenge and the different characteristics of these published works in order to provide a better understanding of the research in this field.
Interpretable factorization of clinical questionnaires to identify latent factors of psychopathology
Authors: Ka Chun Lam, Bridget W Mahony, Armin Raznahan, Francisco Pereira
Date: 2023-12-12 00:00:00
Tasks: Diagnostic, Imputation

Psychiatry research seeks to understand the manifestations of psychopathology in behavior, as measured in questionnaire data, by identifying a small number of latent factors that explain them. While factor analysis is the traditional tool for this purpose, the resulting factors may not be interpretable, and may also be subject to confounding variables. Moreover, missing data are common, and explicit imputation is often required. To overcome these limitations, we introduce interpretability constrained questionnaire factorization (ICQF), a non-negative matrix factorization method with regularization tailored for questionnaire data. Our method aims to promote factor interpretability and solution stability. We provide an optimization procedure with theoretical convergence guarantees, and an automated procedure to detect latent dimensionality accurately. We validate these procedures using realistic synthetic data. We demonstrate the effectiveness of our method in a widely used general-purpose questionnaire, in two independent datasets (the Healthy Brain Network and Adolescent Brain Cognitive Development studies). Specifically, we show that ICQF improves interpretability, as defined by domain experts, while preserving diagnostic information across a range of disorders, and outperforms competing methods for smaller dataset sizes. This suggests that the regularization in our method matches domain characteristics. The python implementation for ICQF is available at \url{https://github.com/jefferykclam/ICQF}.
IDKM: Memory Efficient Neural Network Quantization via Implicit, Differentiable k-Means
Authors: Sean Jaffe, Ambuj K. Singh, Francesco Bullo
Date: 2023-12-12 00:00:00
Tasks: Efficient Neural Network, Quantization

Compressing large neural networks with minimal performance loss is crucial to enabling their deployment on edge devices. (Cho et al., 2022) proposed a weight quantization method that uses an attention-based clustering algorithm called differentiable $k$-means (DKM). Despite achieving state-of-the-art results, DKM's performance is constrained by its heavy memory dependency. We propose an implicit, differentiable $k$-means algorithm (IDKM), which eliminates the major memory restriction of DKM. Let $t$ be the number of $k$-means iterations, $m$ be the number of weight-vectors, and $b$ be the number of bits per cluster address. IDKM reduces the overall memory complexity of a single $k$-means layer from $\mathcal{O}(t \cdot m \cdot 2^b)$ to $\mathcal{O}( m \cdot 2^b)$. We also introduce a variant, IDKM with Jacobian-Free-Backpropagation (IDKM-JFB), for which the time complexity of the gradient calculation is independent of $t$ as well. We provide a proof of concept of our methods by showing that, under the same settings, IDKM achieves comparable performance to DKM with less compute time and less memory. We also use IDKM and IDKM-JFB to quantize a large neural network, Resnet18, on hardware where DKM cannot train at all.
FULL-W2V: Fully Exploiting Data Reuse for W2V on GPU-Accelerated Systems
Authors: Thomas Randall, Tyler Allen, Rong Ge
Date: 2023-12-12 00:00:00
Tasks: GPU

Word2Vec remains one of the highly-impactful innovations in the field of Natural Language Processing (NLP) that represents latent grammatical and syntactical information in human text with dense vectors in a low dimension. Word2Vec has high computational cost due to the algorithm's inherent sequentiality, intensive memory accesses, and the large vocabularies it represents. While prior studies have investigated technologies to explore parallelism and improve memory system performance, they struggle to effectively gain throughput on powerful GPUs. We identify memory data access and latency as the primary bottleneck in prior works on GPUs, which prevents highly optimized kernels from attaining the architecture's peak performance. We present a novel algorithm, FULL-W2V, which maximally exploits the opportunities for data reuse in the W2V algorithm and leverages GPU architecture and resources to reduce access to low memory levels and improve temporal locality. FULL-W2V is capable of reducing accesses to GPU global memory significantly, e.g., by more than 89\%, compared to prior state-of-the-art GPU implementations, resulting in significant performance improvement that scales across successive hardware generations. Our prototype implementation achieves 2.97X speedup when ported from Nvidia Pascal P100 to Volta V100 cards, and outperforms the state-of-the-art by 5.72X on V100 cards with the same embedding quality. In-depth analysis indicates that the reduction of memory accesses through register and shared memory caching and high-throughput shared memory reduction leads to a significantly improved arithmetic intensity. FULL-W2V can potentially benefit many applications in NLP and other domains.
Hierarchical Classification of Financial Transactions Through Context-Fusion of Transformer-based Embeddings and Taxonomy-aware Attention Layer
Authors: Antonio J. G. Busson, Rafael Rocha, Rennan Gaio, Rafael Miceli, Ivan Pereira, Daniel de S. Moraes, Sérgio Colcher, Alvaro Veiga, Bruno Rizzi, Francisco Evangelista, Leandro Santos, Fellipe Marques, Marcos Rabaioli, Diego Feldberg, Debora Mattos, João Pasqua, Diogo Dias
Date: 2023-12-12 00:00:00
Tasks: Hierarchical Multi-label Classification, Multi-Label Classification, MUlTI-LABEL-ClASSIFICATION

This work proposes the Two-headed DragoNet, a Transformer-based model for hierarchical multi-label classification of financial transactions. Our model is based on a stack of Transformers encoder layers that generate contextual embeddings from two short textual descriptors (merchant name and business activity), followed by a Context Fusion layer and two output heads that classify transactions according to a hierarchical two-level taxonomy (macro and micro categories). Finally, our proposed Taxonomy-aware Attention Layer corrects predictions that break categorical hierarchy rules defined in the given taxonomy. Our proposal outperforms classical machine learning methods in experiments of macro-category classification by achieving an F1-score of 93\% on a card dataset and 95% on a current account dataset.
CaVE: A Cone-Aligned Approach for Fast Predict-then-optimize with Binary Linear Programs
Authors: Bo Tang, Elias B. Khalil
Date: 2023-12-12 00:00:00

The end-to-end predict-then-optimize framework, also known as decision-focused learning, has gained popularity for its ability to integrate optimization into the training procedure of machine learning models that predict the unknown cost (objective function) coefficients of optimization problems from contextual instance information. Naturally, most of the problems of interest in this space can be cast as integer linear programs. In this work, we focus on binary linear programs (BLPs) and propose a new end-to-end training method to predict-then-optimize. Our method, Cone-aligned Vector Estimation (CaVE), aligns the predicted cost vectors with the normal cone corresponding to the true optimal solution of a training instance. When the predicted cost vector lies inside the cone, the optimal solution to the linear relaxation of the binary problem is optimal. This alignment not only produces decision-aware learning models but also dramatically reduces training time as it circumvents the need to solve BLPs to compute a loss function with its gradients. Experiments across multiple datasets show that our method exhibits a favorable trade-off between training time and solution quality, particularly with large-scale optimization problems such as vehicle routing, a hard BLP that has yet to benefit from predict-then-optimize methods in the literature due to its difficulty.
Machine Learning and Citizen Science Approaches for Monitoring the Changing Environment
Authors: Sulong Zhou
Date: 2023-12-12 00:00:00
Tasks: Disaster Response, Management

This dissertation will combine new tools and methodologies to answer pressing questions regarding inundation area and hurricane events in complex, heterogeneous changing environments. In addition to remote sensing approaches, citizen science and machine learning are both emerging fields that harness advancing technology to answer environmental management and disaster response questions.
GP+: A Python Library for Kernel-based learning via Gaussian Processes
Authors: Amin Yousefpour, Zahra Zanjani Foumani, Mehdi Shishehbor, Carlos Mora, Ramin Bostanabad
Date: 2023-12-12 00:00:00
Tasks: Bayesian Optimization, Gaussian Processes, parameter estimation

In this paper we introduce GP+, an open-source library for kernel-based learning via Gaussian processes (GPs) which are powerful statistical models that are completely characterized by their parametric covariance and mean functions. GP+ is built on PyTorch and provides a user-friendly and object-oriented tool for probabilistic learning and inference. As we demonstrate with a host of examples, GP+ has a few unique advantages over other GP modeling libraries. We achieve these advantages primarily by integrating nonlinear manifold learning techniques with GPs' covariance and mean functions. As part of introducing GP+, in this paper we also make methodological contributions that (1) enable probabilistic data fusion and inverse parameter estimation, and (2) equip GPs with parsimonious parametric mean functions which span mixed feature spaces that have both categorical and quantitative variables. We demonstrate the impact of these contributions in the context of Bayesian optimization, multi-fidelity modeling, sensitivity analysis, and calibration of computer models.
A Conditioned Unsupervised Regression Framework Attuned to the Dynamic Nature of Data Streams
Authors: Rene Richard, Nabil Belacel
Date: 2023-12-12 00:00:00
Tasks: Drift Detection, Navigate, regression

In scenarios where obtaining real-time labels proves challenging, conventional approaches may result in sub-optimal performance. This paper presents an optimal strategy for streaming contexts with limited labeled data, introducing an adaptive technique for unsupervised regression. The proposed method leverages a sparse set of initial labels and introduces an innovative drift detection mechanism to enable dynamic model adaptations in response to evolving patterns in the data. To enhance adaptability, we integrate the ADWIN (ADaptive WINdowing) algorithm with error generalization based on Root Mean Square Error (RMSE). ADWIN facilitates real-time drift detection, while RMSE provides a robust measure of model prediction accuracy. This combination enables our multivariate method to effectively navigate the challenges of streaming data, continuously adapting to changing patterns while maintaining a high level of predictive precision. We evaluate the performance of our multivariate method across various public datasets, comparing it to non-adapting baselines. Through comprehensive assessments, we demonstrate the superior efficacy of our adaptive regression technique for tasks where obtaining labels in real-time is a significant challenge. The results underscore the method's capacity to outperform traditional approaches and highlight its potential in scenarios characterized by label scarcity and evolving data patterns.
I Open at the Close: A Deep Reinforcement Learning Evaluation of Open Streets Initiatives
Authors: R. Teal Witter, Lucas Rosenblatt
Date: 2023-12-12 00:00:00
Tasks: Deep Reinforcement Learning, Graph Neural Network, Q-Learning, reinforcement-learning, Reinforcement Learning

The open streets initiative "opens" streets to pedestrians and bicyclists by closing them to cars and trucks. The initiative, adopted by many cities across North America, increases community space in urban environments. But could open streets also make cities safer and less congested? We study this question by framing the choice of which streets to open as a reinforcement learning problem. In order to simulate the impact of opening streets, we first compare models for predicting vehicle collisions given network and temporal data. We find that a recurrent graph neural network, leveraging the graph structure and the short-term temporal dependence of the data, gives the best predictive performance. Then, with the ability to simulate collisions and traffic, we frame a reinforcement learning problem to find which streets to open. We compare the streets in the NYC Open Streets program to those proposed by a Q-learning algorithm. We find that the streets proposed by the Q-learning algorithm have reliably better outcomes, while streets in the program have similar outcomes to randomly selected streets. We present our work as a step toward principally choosing which streets to open for safer and less congested cities. All our code and data are available on Github.
Bayesian Online Learning for Consensus Prediction
Authors: Sam Showalter, Alex Boyd, Padhraic Smyth, Mark Steyvers
Date: 2023-12-12 00:00:00
Tasks: Prediction

Given a pre-trained classifier and multiple human experts, we investigate the task of online classification where model predictions are provided for free but querying humans incurs a cost. In this practical but under-explored setting, oracle ground truth is not available. Instead, the prediction target is defined as the consensus vote of all experts. Given that querying full consensus can be costly, we propose a general framework for online Bayesian consensus estimation, leveraging properties of the multivariate hypergeometric distribution. Based on this framework, we propose a family of methods that dynamically estimate expert consensus from partial feedback by producing a posterior over expert and model beliefs. Analyzing this posterior induces an interpretable trade-off between querying cost and classification performance. We demonstrate the efficacy of our framework against a variety of baselines on CIFAR-10H and ImageNet-16H, two large-scale crowdsourced datasets.
SE(3)-Invariant Multiparameter Persistent Homology for Chiral-Sensitive Molecular Property Prediction
Authors: Andac Demir, Francis Prael III, Bulent Kiziltan
Date: 2023-12-12 00:00:00
Tasks: Active Learning, Drug Discovery, Molecular Property Prediction, Property Prediction

In this study, we present a novel computational method for generating molecular fingerprints using multiparameter persistent homology (MPPH). This technique holds considerable significance for drug discovery and materials science, where precise molecular property prediction is vital. By integrating SE(3)-invariance with Vietoris-Rips persistent homology, we effectively capture the three-dimensional representations of molecular chirality. This non-superimposable mirror image property directly influences the molecular interactions, serving as an essential factor in molecular property prediction. We explore the underlying topologies and patterns in molecular structures by applying Vietoris-Rips persistent homology across varying scales and parameters such as atomic weight, partial charge, bond type, and chirality. Our method's efficacy can be improved by incorporating additional parameters such as aromaticity, orbital hybridization, bond polarity, conjugated systems, as well as bond and torsion angles. Additionally, we leverage Stochastic Gradient Langevin Boosting in a Bayesian ensemble of GBDTs to obtain aleatoric and epistemic uncertainty estimates for gradient boosting models. With these uncertainty estimates, we prioritize high-uncertainty samples for active learning and model fine-tuning, benefiting scenarios where data labeling is costly or time consuming. Compared to conventional GNNs which usually suffer from oversmoothing and oversquashing, MPPH provides a more comprehensive and interpretable characterization of molecular data topology. We substantiate our approach with theoretical stability guarantees and demonstrate its superior performance over existing state-of-the-art methods in predicting molecular properties through extensive evaluations on the MoleculeNet benchmark datasets.
Non-contact Multimodal Indoor Human Monitoring Systems: A Survey
Authors: Le Ngu Nguyen, Praneeth Susarla, Anirban Mukherjee, Manuel Lage Cañellas, Constantino Álvarez Casado, Xiaoting Wu, Olli~Silvén, Dinesh Babu Jayagopi, Miguel Bordallo López
Date: 2023-12-11 00:00:00
Tasks: Survey

Indoor human monitoring systems leverage a wide range of sensors, including cameras, radio devices, and inertial measurement units, to collect extensive data from users and the environment. These sensors contribute diverse data modalities, such as video feeds from cameras, received signal strength indicators and channel state information from WiFi devices, and three-axis acceleration data from inertial measurement units. In this context, we present a comprehensive survey of multimodal approaches for indoor human monitoring systems, with a specific focus on their relevance in elderly care. Our survey primarily highlights non-contact technologies, particularly cameras and radio devices, as key components in the development of indoor human monitoring systems. Throughout this article, we explore well-established techniques for extracting features from multimodal data sources. Our exploration extends to methodologies for fusing these features and harnessing multiple modalities to improve the accuracy and robustness of machine learning models. Furthermore, we conduct comparative analysis across different data modalities in diverse human monitoring tasks and undertake a comprehensive examination of existing multimodal datasets. This extensive survey not only highlights the significance of indoor human monitoring systems but also affirms their versatile applications. In particular, we emphasize their critical role in enhancing the quality of elderly care, offering valuable insights into the development of non-contact monitoring solutions applicable to the needs of aging populations.
Contrastive News and Social Media Linking using BERT for Articles and Tweets across Dual Platforms
Authors: Jan Piotrowski, Marek Wachnicki, Mateusz Perlik, Jakub Podolak, Grzegorz Rucki, Michał Brzozowski, Paweł Olejnik, Julian Kozłowski, Tomasz Nocoń, Jakub Kozieł, Stanisław Giziński, Piotr Sankowski
Date: 2023-12-11 00:00:00
Tasks: Articles, Contrastive Learning, Topic Models

X (formerly Twitter) has evolved into a contemporary agora, offering a platform for individuals to express opinions and viewpoints on current events. The majority of the topics discussed on Twitter are directly related to ongoing events, making it an important source for monitoring public discourse. However, linking tweets to specific news presents a significant challenge due to their concise and informal nature. Previous approaches, including topic models, graph-based models, and supervised classifiers, have fallen short in effectively capturing the unique characteristics of tweets and articles. Inspired by the success of the CLIP model in computer vision, which employs contrastive learning to model similarities between images and captions, this paper introduces a contrastive learning approach for training a representation space where linked articles and tweets exhibit proximity. We present our contrastive learning approach, CATBERT (Contrastive Articles Tweets BERT), leveraging pre-trained BERT models. The model is trained and tested on a dataset containing manually labeled English and Polish tweets and articles related to the Russian-Ukrainian war. We evaluate CATBERT's performance against traditional approaches like LDA, and the novel method based on OpenAI embeddings, which has not been previously applied to this task. Our findings indicate that CATBERT demonstrates superior performance in associating tweets with relevant news articles. Furthermore, we demonstrate the performance of the models when applied to finding the main topic -- represented by an article -- of the whole cascade of tweets. In this new task, we report the performance of the different models in dependence on the cascade size.