pwc-archive/papers-with-abstracts huggingface dataset:
Improving Robustness against Real-World and Worst-Case Distribution Shifts through Decision Region Quantification
Authors: Leo Schwinn, Leon Bungert, An Nguyen, René Raab, Falk Pulsmeyer, Doina Precup, Björn Eskofier, Dario Zanca
Date: 2022-05-19 00:00:00

The reliability of neural networks is essential for their use in safety-critical applications. Existing approaches generally aim at improving the robustness of neural networks to either real-world distribution shifts (e.g., common corruptions and perturbations, spatial transformations, and natural adversarial examples) or worst-case distribution shifts (e.g., optimized adversarial examples). In this work, we propose the Decision Region Quantification (DRQ) algorithm to improve the robustness of any differentiable pre-trained model against both real-world and worst-case distribution shifts in the data. DRQ analyzes the robustness of local decision regions in the vicinity of a given data point to make more reliable predictions. We theoretically motivate the DRQ algorithm by showing that it effectively smooths spurious local extrema in the decision surface. Furthermore, we propose an implementation using targeted and untargeted adversarial attacks. An extensive empirical evaluation shows that DRQ increases the robustness of adversarially and non-adversarially trained models against real-world and worst-case distribution shifts on several computer vision benchmark datasets.
Learning Energy Networks with Generalized Fenchel-Young Losses
Authors: Mathieu Blondel, Felipe Llinares-López, Robert Dadashi, Léonard Hussenot, Matthieu Geist
Date: 2022-05-19 00:00:00
Tasks: Imitation Learning

Energy-based models, a.k.a. energy networks, perform inference by optimizing an energy function, typically parametrized by a neural network. This allows one to capture potentially complex relationships between inputs and outputs. To learn the parameters of the energy function, the solution to that optimization problem is typically fed into a loss function. The key challenge for training energy networks lies in computing loss gradients, as this typically requires argmin/argmax differentiation. In this paper, building upon a generalized notion of conjugate function, which replaces the usual bilinear pairing with a general energy function, we propose generalized Fenchel-Young losses, a natural loss construction for learning energy networks. Our losses enjoy many desirable properties and their gradients can be computed efficiently without argmin/argmax differentiation. We also prove the calibration of their excess risk in the case of linear-concave energies. We demonstrate our losses on multilabel classification and imitation learning tasks.
How catastrophic can catastrophic forgetting be in linear regression?
Authors: Itay Evron, Edward Moroshko, Rachel Ward, Nati Srebro, Daniel Soudry
Date: 2022-05-19 00:00:00
Tasks: Continual Learning, regression

To better understand catastrophic forgetting, we study fitting an overparameterized linear model to a sequence of tasks with different input distributions. We analyze how much the model forgets the true labels of earlier tasks after training on subsequent tasks, obtaining exact expressions and bounds. We establish connections between continual learning in the linear setting and two other research areas: alternating projections and the Kaczmarz method. In specific settings, we highlight differences between forgetting and convergence to the offline solution as studied in those areas. In particular, when T tasks in d dimensions are presented cyclically for k iterations, we prove an upper bound of T^2 * min{1/sqrt(k), d/k} on the forgetting. This stands in contrast to the convergence to the offline solution, which can be arbitrarily slow according to existing alternating projection results. We further show that the T^2 factor can be lifted when tasks are presented in a random ordering.
Learning Graph Structure from Convolutional Mixtures
Authors: Max Wasserman, Saurabh Sihag, Gonzalo Mateos, Alejandro Ribeiro
Date: 2022-05-19 00:00:00
Tasks: Graph Learning, Link Prediction

Machine learning frameworks such as graph neural networks typically rely on a given, fixed graph to exploit relational inductive biases and thus effectively learn from network data. However, when said graphs are (partially) unobserved, noisy, or dynamic, the problem of inferring graph structure from data becomes relevant. In this paper, we postulate a graph convolutional relationship between the observed and latent graphs, and formulate the graph learning task as a network inverse (deconvolution) problem. In lieu of eigendecomposition-based spectral methods or iterative optimization solutions, we unroll and truncate proximal gradient iterations to arrive at a parameterized neural network architecture that we call a Graph Deconvolution Network (GDN). GDNs can learn a distribution of graphs in a supervised fashion, perform link prediction or edge-weight regression tasks by adapting the loss function, and they are inherently inductive. We corroborate GDN's superior graph recovery performance and its generalization to larger graphs using synthetic data in supervised settings. Furthermore, we demonstrate the robustness and representation power of GDNs on real world neuroimaging and social network datasets.
Jacobian Granger Causal Neural Networks for Analysis of Stationary and Nonstationary Data
Authors: Suryadi, Yew-Soon Ong, Lock Yue Chew
Date: 2022-05-19 00:00:00
Tasks: Time Series, Time Series Analysis

Granger causality is a commonly used method for uncovering information flow and dependencies in a time series. Here we introduce JGC (Jacobian Granger Causality), a neural network-based approach to Granger causality using the Jacobian as a measure of variable importance, and propose a thresholding procedure for inferring Granger causal variables using this measure. The resulting approach performs consistently well compared to other approaches in identifying Granger causal variables, the associated time lags, as well as interaction signs. Lastly, through the inclusion of a time variable, we show that this approach is able to learn the temporal dependencies for nonstationary systems whose Granger causal structures change in time.
Automatic Spoken Language Identification using a Time-Delay Neural Network
Authors: Benjamin Kepecs, Homayoon Beigi
Date: 2022-05-19 00:00:00
Tasks: Automatic Speech Recognition, Automatic Speech Recognition (ASR), Language Identification, Language Modeling, Language Modelling, speech-recognition, Speech Recognition, Spoken language identification

Closed-set spoken language identification is the task of recognizing the language being spoken in a recorded audio clip from a set of known languages. In this study, a language identification system was built and trained to distinguish between Arabic, Spanish, French, and Turkish based on nothing more than recorded speech. A pre-existing multilingual dataset was used to train a series of acoustic models based on the Tedlium TDNN model to perform automatic speech recognition. The system was provided with a custom multilingual language model and a specialized pronunciation lexicon with language names prepended to phones. The trained model was used to generate phone alignments to test data from all four languages, and languages were predicted based on a voting scheme choosing the most common language prepend in an utterance. Accuracy was measured by comparing predicted languages to known languages, and was determined to be very high in identifying Spanish and Arabic, and somewhat lower in identifying Turkish and French.
Data Valuation for Offline Reinforcement Learning
Authors: Amir Abolfazli, Gregory Palmer, Daniel Kudenko
Date: 2022-05-19 00:00:00
Tasks: Data Valuation, Deep Reinforcement Learning, MuJoCo, reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL)

The success of deep reinforcement learning (DRL) hinges on the availability of training data, which is typically obtained via a large number of environment interactions. In many real-world scenarios, costs and risks are associated with gathering these data. The field of offline reinforcement learning addresses these issues through outsourcing the collection of data to a domain expert or a carefully monitored program and subsequently searching for a batch-constrained optimal policy. With the emergence of data markets, an alternative to constructing a dataset in-house is to purchase external data. However, while state-of-the-art offline reinforcement learning approaches have shown a lot of promise, they currently rely on carefully constructed datasets that are well aligned with the intended target domains. This raises questions regarding the transferability and robustness of an offline reinforcement learning agent trained on externally acquired data. In this paper, we empirically evaluate the ability of the current state-of-the-art offline reinforcement learning approaches to coping with the source-target domain mismatch within two MuJoCo environments, finding that current state-of-the-art offline reinforcement learning algorithms underperform in the target domain. To address this, we propose data valuation for offline reinforcement learning (DVORL), which allows us to identify relevant and high-quality transitions, improving the performance and transferability of policies learned by offline reinforcement learning algorithms. The results show that our method outperforms offline reinforcement learning baselines on two MuJoCo environments.
ODBO: Bayesian Optimization with Search Space Prescreening for Directed Protein Evolution
Authors: Lixue Cheng, ZiYi Yang, ChangYu Hsieh, Benben Liao, Shengyu Zhang
Date: 2022-05-19 00:00:00
Tasks: Bayesian Optimization, Experimental Design, Outlier Detection

Directed evolution is a versatile technique in protein engineering that mimics the process of natural selection by iteratively alternating between mutagenesis and screening in order to search for sequences that optimize a given property of interest, such as catalytic activity and binding affinity to a specified target. However, the space of possible proteins is too large to search exhaustively in the laboratory, and functional proteins are scarce in the vast sequence space. Machine learning (ML) approaches can accelerate directed evolution by learning to map protein sequences to functions without building a detailed model of the underlying physics, chemistry and biological pathways. Despite the great potentials held by these ML methods, they encounter severe challenges in identifying the most suitable sequences for a targeted function. These failures can be attributed to the common practice of adopting a high-dimensional feature representation for protein sequences and inefficient search methods. To address these issues, we propose an efficient, experimental design-oriented closed-loop optimization framework for protein directed evolution, termed ODBO, which employs a combination of novel low-dimensional protein encoding strategy and Bayesian optimization enhanced with search space prescreening via outlier detection. We further design an initial sample selection strategy to minimize the number of experimental samples for training ML models. We conduct and report four protein directed evolution experiments that substantiate the capability of the proposed framework for finding of the variants with properties of interest. We expect the ODBO framework to greatly reduce the experimental cost and time cost of directed evolution, and can be further generalized as a powerful tool for adaptive experimental design in a broader context.
Deterministic training of generative autoencoders using invertible layers
Authors: Gianluigi Silvestri, Daan Roos, Luca Ambrogioni
Date: 2022-05-19 00:00:00
Tasks: Decoder, Denoising

In this work, we provide a deterministic alternative to the stochastic variational training of generative autoencoders. We refer to these new generative autoencoders as AutoEncoders within Flows (AEF), since the encoder and decoder are defined as affine layers of an overall invertible architecture. This results in a deterministic encoding of the data, as opposed to the stochastic encoding of VAEs. The paper introduces two related families of AEFs. The first family relies on a partition of the ambient space and is trained by exact maximum-likelihood. The second family exploits a deterministic expansion of the ambient space and is trained by maximizing the log-probability in this extended space. This latter case leaves complete freedom in the choice of encoder, decoder and prior architectures, making it a drop-in replacement for the training of existing VAEs and VAE-style models. We show that these AEFs can have strikingly higher performance than architecturally identical VAEs in terms of log-likelihood and sample quality, especially for low dimensional latent spaces. Importantly, we show that AEF samples are substantially sharper than VAE samples.
Parallel bandit architecture based on laser chaos for reinforcement learning
Authors: Takashi Urushibara, Nicolas Chauvet, Satoshi Kochi, Satoshi Sunada, Kazutaka Kanno, Atsushi Uchida, Ryoichi Horisaki, Makoto Naruse
Date: 2022-05-19 00:00:00
Tasks: Decision Making, Q-Learning, reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL), Time Series Analysis

Accelerating artificial intelligence by photonics is an active field of study aiming to exploit the unique properties of photons. Reinforcement learning is an important branch of machine learning, and photonic decision-making principles have been demonstrated with respect to the multi-armed bandit problems. However, reinforcement learning could involve a massive number of states, unlike previously demonstrated bandit problems where the number of states is only one. Q-learning is a well-known approach in reinforcement learning that can deal with many states. The architecture of Q-learning, however, does not fit well photonic implementations due to its separation of update rule and the action selection. In this study, we organize a new architecture for multi-state reinforcement learning as a parallel array of bandit problems in order to benefit from photonic decision-makers, which we call parallel bandit architecture for reinforcement learning or PBRL in short. Taking a cart-pole balancing problem as an instance, we demonstrate that PBRL adapts to the environment in fewer time steps than Q-learning. Furthermore, PBRL yields faster adaptation when operated with a chaotic laser time series than the case with uniformly distributed pseudorandom numbers where the autocorrelation inherent in the laser chaos provides a positive effect. We also find that the variety of states that the system undergoes during the learning phase exhibits completely different properties between PBRL and Q-learning. The insights obtained through the present study are also beneficial for existing computing platforms, not just photonic realizations, in accelerating performances by the PBRL algorithms and correlated random sequences.
scICML: Information-theoretic Co-clustering-based Multi-view Learning for the Integrative Analysis of Single-cell Multi-omics data
Authors: Pengcheng Zeng, Zhixiang Lin
Date: 2022-05-19 00:00:00
Tasks: Clustering, Data Integration, MULTI-VIEW LEARNING

Modern high-throughput sequencing technologies have enabled us to profile multiple molecular modalities from the same single cell, providing unprecedented opportunities to assay celluar heterogeneity from multiple biological layers. However, the datasets generated from these technologies tend to have high level of noise and are highly sparse, bringing challenges to data analysis. In this paper, we develop a novel information-theoretic co-clustering-based multi-view learning (scICML) method for multi-omics single-cell data integration. scICML utilizes co-clusterings to aggregate similar features for each view of data and uncover the common clustering pattern for cells. In addition, scICML automatically matches the clusters of the linked features across different data types for considering the biological dependency structure across different types of genomic features. Our experiments on four real-world datasets demonstrate that scICML improves the overall clustering performance and provides biological insights into the data analysis of peripheral blood mononuclear cells.
Variational Inference for Bayesian Bridge Regression
Authors: Carlos Tadeu Pagani Zanini, Helio dos Santos Migon, Ronaldo Dias
Date: 2022-05-19 00:00:00
Tasks: Bayesian Inference, regression, Variational Inference

We study the implementation of Automatic Differentiation Variational inference (ADVI) for Bayesian inference on regression models with bridge penalization. The bridge approach uses $\ell_{\alpha}$ norm, with $\alpha \in (0, +\infty)$ to define a penalization on large values of the regression coefficients, which includes the Lasso ($\alpha = 1$) and ridge $(\alpha = 2)$ penalizations as special cases. Full Bayesian inference seamlessly provides joint uncertainty estimates for all model parameters. Although MCMC aproaches are available for bridge regression, it can be slow for large dataset, specially in high dimensions. The ADVI implementation allows the use of small batches of data at each iteration (due to stochastic gradient based algorithms), therefore speeding up computational time in comparison with MCMC. We illustrate the approach on non-parametric regression models with B-splines, although the method works seamlessly for other choices of basis functions. A simulation study shows the main properties of the proposed method.
Minority Stress Experienced by LGBTQ Online Communities during the COVID-19 Pandemic
Authors: Yunhao Yuan, Gaurav Verma, Barbara Keller, Talayeh Aledavood
Date: 2022-05-19 00:00:00
Tasks: Attribute

The COVID-19 pandemic has disproportionately impacted the lives of minorities, such as members of the LGBTQ community (lesbian, gay, bisexual, transgender, and queer) due to pre-existing social disadvantages and health disparities. Although extensive research has been carried out on the impact of the COVID-19 pandemic on different aspects of the general population's lives, few studies are focused on the LGBTQ population. In this paper, we develop and evaluate two sets of machine learning classifiers using a pre-pandemic and a during-pandemic dataset to identify Twitter posts exhibiting minority stress, which is a unique pressure faced by the members of the LGBTQ population due to their sexual and gender identities. We demonstrate that our best pre- and during-pandemic models show strong and stable performance for detecting posts that contain minority stress. We investigate the linguistic differences in minority stress posts across pre- and during-pandemic periods. We find that anger words are strongly associated with minority stress during the COVID-19 pandemic. We explore the impact of the pandemic on the emotional states of the LGBTQ population by adopting propensity score-based matching to perform a causal analysis. The results show that the LGBTQ population have a greater increase in the usage of cognitive words and worsened observable attribute in the usage of positive emotion words than the group of the general population with similar pre-pandemic behavioral attributes. Our findings have implications for the public health domain and policy-makers to provide adequate support, especially with respect to mental health, to the LGBTQ population during future crises.
Differentially private Riemannian optimization
Authors: Andi Han, Bamdev Mishra, Pratik Jawanpuria, Junbin Gao
Date: 2022-05-19 00:00:00
Tasks: Riemannian optimization

In this paper, we study the differentially private empirical risk minimization problem where the parameter is constrained to a Riemannian manifold. We introduce a framework of differentially private Riemannian optimization by adding noise to the Riemannian gradient on the tangent space. The noise follows a Gaussian distribution intrinsically defined with respect to the Riemannian metric. We adapt the Gaussian mechanism from the Euclidean space to the tangent space compatible to such generalized Gaussian distribution. We show that this strategy presents a simple analysis as compared to directly adding noise on the manifold. We further show privacy guarantees of the proposed differentially private Riemannian (stochastic) gradient descent using an extension of the moments accountant technique. Additionally, we prove utility guarantees under geodesic (strongly) convex, general nonconvex objectives as well as under the Riemannian Polyak-{\L}ojasiewicz condition. We show the efficacy of the proposed framework in several applications.
Neural ODEs with Irregular and Noisy Data
Authors: Pawan Goyal, Peter Benner
Date: 2022-05-19 00:00:00

Measurement noise is an integral part while collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and irregular sampled measurements. In our methodology, the main innovation can be seen in the integration of deep neural networks with the neural ordinary differential equations (ODEs) approach. Precisely, we aim at learning a neural network that provides (approximately) an implicit representation of the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by constraining using neural ODEs. The proposed framework to learn a model describing the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are not available at the same temporal grid. Moreover, a particular structure, e.g., second-order with respect to time, can easily be incorporated. We demonstrate the effectiveness of the proposed method for learning models using data obtained from various differential equations and present a comparison with the neural ODE method that does not make any special treatment to noise.
Why only Micro-F1? Class Weighting of Measures for Relation Classification
Authors: David Harbecke, Yuxuan Chen, Leonhard Hennig, Christoph Alt
Date: 2022-05-19 00:00:00
Proceeding: nlppower (ACL) 2022 5
Tasks: Relation, Relation Classification

Relation classification models are conventionally evaluated using only a single measure, e.g., micro-F1, macro-F1 or AUC. In this work, we analyze weighting schemes, such as micro and macro, for imbalanced datasets. We introduce a framework for weighting schemes, where existing schemes are extremes, and two new intermediate schemes. We show that reporting results of different weighting schemes better highlights strengths and weaknesses of a model.