pwc-archive/papers-with-abstracts huggingface dataset:
The Perspective of Software Professionals on Algorithmic Racism
Authors: Ronnie de Souza Santos, Luiz Fernando de Lima, Cleyton Magalhaes
Date: 2023-06-27 00:00:00
Tasks: Descriptive

Context. Algorithmic racism is the term used to describe the behavior of technological solutions that constrains users based on their ethnicity. Lately, various data-driven software systems have been reported to discriminate against Black people, either for the use of biased data sets or due to the prejudice propagated by software professionals in their code. As a result, Black people are experiencing disadvantages in accessing technology-based services, such as housing, banking, and law enforcement. Goal. This study aims to explore algorithmic racism from the perspective of software professionals. Method. A survey questionnaire was applied to explore the understanding of software practitioners on algorithmic racism, and data analysis was conducted using descriptive statistics and coding techniques. Results. We obtained answers from a sample of 73 software professionals discussing their understanding and perspectives on algorithmic racism in software development. Our results demonstrate that the effects of algorithmic racism are well-known among practitioners. However, there is no consensus on how the problem can be effectively addressed in software engineering. In this paper, some solutions to the problem are proposed based on the professionals' narratives. Conclusion. Combining technical and social strategies, including training on structural racism for software professionals, is the most promising way to address the algorithmic racism problem and its effects on the software solutions delivered to our society.
MIMIC: Masked Image Modeling with Image Correspondences
Authors: Kalyani Marathe, Mahtab Bigverdi, Nishat Khan, Tuhin Kundu, Patrick Howe, Sharan Ranjit S, Anand Bhattad, Aniruddha Kembhavi, Linda G. Shapiro, Ranjay Krishna
Date: 2023-06-27 00:00:00
Tasks: Depth Estimation, Pose Estimation, Representation Learning, Semantic Segmentation, Surface Normals Estimation

Dense pixel-specific representation learning at scale has been bottlenecked due to the unavailability of large-scale multi-view datasets. Current methods for building effective pretraining datasets heavily rely on annotated 3D meshes, point clouds, and camera parameters from simulated environments, preventing them from building datasets from real-world data sources where such metadata is lacking. We propose a pretraining dataset-curation approach that does not require any additional annotations. Our method allows us to generate multi-view datasets from both real-world videos and simulated environments at scale. Specifically, we experiment with two scales: MIMIC-1M with 1.3M and MIMIC-3M with 3.1M multi-view image pairs. We train multiple models with different masked image modeling objectives to showcase the following findings: Representations trained on our automatically generated MIMIC-3M outperform those learned from expensive crowdsourced datasets (ImageNet-1K) and those learned from synthetic environments (MULTIVIEW-HABITAT) on two dense geometric tasks: depth estimation on NYUv2 (1.7%), and surface normals estimation on Taskonomy (2.05%). For dense tasks which also require object understanding, we outperform MULTIVIEW-HABITAT, on semantic segmentation on ADE20K (3.89%), pose estimation on MSCOCO (9.4%), and reduce the gap with models pre-trained on the object-centric expensive ImageNet-1K. We outperform even when the representations are frozen, and when downstream training data is limited to few-shot. Larger dataset (MIMIC-3M) significantly improves performance, which is promising since our curation method can arbitrarily scale to produce even larger datasets. MIMIC code, dataset, and pretrained models are open-sourced at https://github.com/RAIVNLab/MIMIC.
Identifying and Consolidating Knowledge Engineering Requirements
Authors: Bradley P. Allen, Filip Ilievski, Saurav Joshi
Date: 2023-06-27 00:00:00

Knowledge engineering is the process of creating and maintaining knowledge-producing systems. Throughout the history of computer science and AI, knowledge engineering workflows have been widely used because high-quality knowledge is assumed to be crucial for reliable intelligent agents. However, the landscape of knowledge engineering has changed, presenting four challenges: unaddressed stakeholder requirements, mismatched technologies, adoption barriers for new organizations, and misalignment with software engineering practices. In this paper, we propose to address these challenges by developing a reference architecture using a mainstream software methodology. By studying the requirements of different stakeholders and eras, we identify 23 essential quality attributes for evaluating reference architectures. We assess three candidate architectures from recent literature based on these attributes. Finally, we discuss the next steps towards a comprehensive reference architecture, including prioritizing quality attributes, integrating components with complementary strengths, and supporting missing socio-technical requirements. As this endeavor requires a collaborative effort, we invite all knowledge engineering researchers and practitioners to join us.
Evaluation of OpenAI Codex for HPC Parallel Programming Models Kernel Generation
Authors: William F. Godoy, Pedro Valero-Lara, Keita Teranishi, Prasanna Balaprakash, Jeffrey S. Vetter
Date: 2023-06-27 00:00:00

We evaluate AI-assisted generative capabilities on fundamental numerical kernels in high-performance computing (HPC), including AXPY, GEMV, GEMM, SpMV, Jacobi Stencil, and CG. We test the generated kernel codes for a variety of language-supported programming models, including (1) C++ (e.g., OpenMP [including offload], OpenACC, Kokkos, SyCL, CUDA, and HIP), (2) Fortran (e.g., OpenMP [including offload] and OpenACC), (3) Python (e.g., numba, Numba, cuPy, and pyCUDA), and (4) Julia (e.g., Threads, CUDA.jl, AMDGPU.jl, and KernelAbstractions.jl). We use the GitHub Copilot capabilities powered by OpenAI Codex available in Visual Studio Code as of April 2023 to generate a vast amount of implementations given simple <kernel> + <programming model> + <optional hints> prompt variants. To quantify and compare the results, we propose a proficiency metric around the initial 10 suggestions given for each prompt. Results suggest that the OpenAI Codex outputs for C++ correlate with the adoption and maturity of programming models. For example, OpenMP and CUDA score really high, whereas HIP is still lacking. We found that prompts from either a targeted language such as Fortran or the more general-purpose Python can benefit from adding code keywords, while Julia prompts perform acceptably well for its mature programming models (e.g., Threads and CUDA.jl). We expect for these benchmarks to provide a point of reference for each programming model's community. Overall, understanding the convergence of large language models, AI, and HPC is crucial due to its rapidly evolving nature and how it is redefining human-computer interactions.
Continual Learning for Out-of-Distribution Pedestrian Detection
Authors: Mahdiyar Molahasani, Ali Etemad, Michael Greenspan
Date: 2023-06-26 00:00:00
Tasks: Continual Learning, object-detection, Object Detection, Out-of-Distribution Generalization, Pedestrian Detection

A continual learning solution is proposed to address the out-of-distribution generalization problem for pedestrian detection. While recent pedestrian detection models have achieved impressive performance on various datasets, they remain sensitive to shifts in the distribution of the inference data. Our method adopts and modifies Elastic Weight Consolidation to a backbone object detection network, in order to penalize the changes in the model weights based on their importance towards the initially learned task. We show that when trained with one dataset and fine-tuned on another, our solution learns the new distribution and maintains its performance on the previous one, avoiding catastrophic forgetting. We use two popular datasets, CrowdHuman and CityPersons for our cross-dataset experiments, and show considerable improvements over standard fine-tuning, with a 9% and 18% miss rate percent reduction improvement in the CrowdHuman and CityPersons datasets, respectively.
A direct optimization algorithm for input-constrained MPC
Authors: Liang Wu, Richard D. Braatz
Date: 2023-06-26 00:00:00
Tasks: Model Predictive Control

Providing an execution time certificate is a pressing requirement when deploying Model Predictive Control (MPC) in real-time embedded systems such as microcontrollers. Real-time MPC requires that its worst-case (maximum) execution time must be theoretically guaranteed to be smaller than the sampling time in closed-loop. This technical note considers input-constrained MPC problems and exploits the structure of the resulting box-constrained QPs. Then, we propose a \textit{cost-free} and \textit{data-independent} initialization strategy, which enables us, for the first time, to remove the initialization assumption of feasible full-Newton interior-point algorithms. We prove that the number of iterations of our proposed algorithm is \textit{only dimension-dependent} (\textit{data-independent}), \textit{simple-calculated}, and \textit{exact} (not \textit{worst-case}) with the value $\left\lceil\frac{\log(\frac{2n}{\epsilon})}{-2\log(\frac{\sqrt{2n}}{\sqrt{2n}+\sqrt{2}-1})}\right\rceil \!+ 1$, where $n$ denotes the problem dimension and $\epsilon$ denotes the constant stopping tolerance. These features enable our algorithm to trivially certify the execution time of nonlinear MPC (via online linearized schemes) or adaptive MPC problems. The execution-time-certified capability of our algorithm is theoretically and numerically validated through an open-loop unstable AFTI-16 example.
Optimized Vectorizing of Building Structures with Switch: High-Efficiency Convolutional Channel-Switch Hybridization Strategy
Authors: Moule Lin, WeiPeng Jing, Chao Li, András Jung
Date: 2023-06-26 00:00:00
Tasks: Graph Reconstruction

The building planar graph reconstruction, a.k.a. footprint reconstruction, which lies in the domain of computer vision and geoinformatics, has been long afflicted with the challenge of redundant parameters in conventional convolutional models. Therefore, in this letter, we proposed an advanced and adaptive shift architecture, namely the Switch operator, which incorporates non-exponential growth parameters while retaining analogous functionalities to integrate local feature spatial information, resembling a high-dimensional convolution operation. The Switch operator, cross-channel operation, architecture implements the XOR operation to alternately exchange adjacent or diagonal features, and then blends alternating channels through a 1x1 convolution operation to consolidate information from different channels. The SwitchNN architecture, on the other hand, incorporates a group-based parameter-sharing mechanism inspired by the convolutional neural network process and thereby significantly reducing the number of parameters. We validated our proposed approach through experiments on the SpaceNet corpus, a publicly available dataset annotated with 2,001 buildings across the cities of Los Angeles, Las Vegas, and Paris. Our results demonstrate the effectiveness of this innovative architecture in building planar graph reconstruction from 2D building images.
Beyond dynamic programming
Authors: Abhinav Muraleedharan
Date: 2023-06-26 00:00:00
Tasks: reinforcement-learning, Reinforcement Learning

In this paper, we present Score-life programming, a novel theoretical approach for solving reinforcement learning problems. In contrast with classical dynamic programming-based methods, our method can search over non-stationary policy functions, and can directly compute optimal infinite horizon action sequences from a given state. The central idea in our method is the construction of a mapping between infinite horizon action sequences and real numbers in a bounded interval. This construction enables us to formulate an optimization problem for directly computing optimal infinite horizon action sequences, without requiring a policy function. We demonstrate the effectiveness of our approach by applying it to nonlinear optimal control problems. Overall, our contributions provide a novel theoretical framework for formulating and solving reinforcement learning problems.
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Authors: Zhihan Zhou, Yanrong Ji, Weijian Li, Pratik Dutta, Ramana Davuluri, Han Liu
Date: 2023-06-26 00:00:00
Tasks: Computational Efficiency, Core Promoter Detection, Covid Variant Prediction, Data Compression, DNA analysis, Epigenetic Marks Prediction, Genome Understanding, GPU, Promoter Detection, Splice Site Prediction, Transcription Factor Binding Site Prediction, Transcription Factor Binding Site Prediction (Human), Transcription Factor Binding Site Prediction (Mouse)

Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works have largely hinged on k-mer, fixed-length permutations of A, T, C, and G, as the token of the genome language due to its simplicity. However, we argue that the computation and sample inefficiencies introduced by k-mer tokenization are primary obstacles in developing large genome foundational models. We provide conceptual and empirical insights into genome tokenization, building on which we propose to replace k-mer tokenization with Byte Pair Encoding (BPE), a statistics-based data compression algorithm that constructs tokens by iteratively merging the most frequent co-occurring genome segment in the corpus. We demonstrate that BPE not only overcomes the limitations of k-mer tokenization but also benefits from the computational efficiency of non-overlapping tokenization. Based on these insights, we introduce DNABERT-2, a refined genome foundation model that adapts an efficient tokenizer and employs multiple strategies to overcome input length constraints, reduce time and memory expenditure, and enhance model capability. Furthermore, we identify the absence of a comprehensive and standardized benchmark for genome understanding as another significant impediment to fair comparative analysis. In response, we propose the Genome Understanding Evaluation (GUE), a comprehensive multi-species genome classification dataset that amalgamates $36$ distinct datasets across $9$ tasks, with input lengths ranging from $70$ to $10000$. Through comprehensive experiments on the GUE benchmark, we demonstrate that DNABERT-2 achieves comparable performance to the state-of-the-art model with $21 \times$ fewer parameters and approximately $92 \times$ less GPU time in pre-training.
SIMMF: Semantics-aware Interactive Multiagent Motion Forecasting for Autonomous Vehicle Driving
Authors: Vidyaa Krishnan Nivash, Ahmed H. Qureshi
Date: 2023-06-26 00:00:00
Tasks: Autonomous Driving, Autonomous Vehicles, Motion Forecasting, motion prediction

Autonomous vehicles require motion forecasting of their surrounding multiagents (pedestrians and vehicles) to make optimal decisions for navigation. The existing methods focus on techniques to utilize the positions and velocities of these agents and fail to capture semantic information from the scene. Moreover, to mitigate the increase in computational complexity associated with the number of agents in the scene, some works leverage Euclidean distance to prune far-away agents. However, distance-based metric alone is insufficient to select relevant agents and accurately perform their predictions. To resolve these issues, we propose the Semantics-aware Interactive Multiagent Motion Forecasting (SIMMF) method to capture semantics along with spatial information and optimally select relevant agents for motion prediction. Specifically, we achieve this by implementing a semantic-aware selection of relevant agents from the scene and passing them through an attention mechanism to extract global encodings. These encodings along with agents' local information, are passed through an encoder to obtain time-dependent latent variables for a motion policy predicting the future trajectories. Our results show that the proposed approach outperforms state-of-the-art baselines and provides more accurate and scene-consistent predictions.
Are aligned neural networks adversarially aligned?
Authors: Nicholas Carlini, Milad Nasr, Christopher A. Choquette-Choo, Matthew Jagielski, Irena Gao, Anas Awadalla, Pang Wei Koh, Daphne Ippolito, Katherine Lee, Florian Tramer, Ludwig Schmidt
Date: 2023-06-26 00:00:00
Proceeding: NeurIPS 2023 11

Large language models are now tuned to align with the goals of their creators, namely to be "helpful and harmless." These models should respond helpfully to user questions, but refuse to answer requests that could cause harm. However, adversarial users can construct inputs which circumvent attempts at alignment. In this work, we study adversarial alignment, and ask to what extent these models remain aligned when interacting with an adversarial user who constructs worst-case inputs (adversarial examples). These inputs are designed to cause the model to emit harmful content that would otherwise be prohibited. We show that existing NLP-based optimization attacks are insufficiently powerful to reliably attack aligned text models: even when current NLP-based attacks fail, we can find adversarial inputs with brute force. As a result, the failure of current attacks should not be seen as proof that aligned text models remain aligned under adversarial inputs. However the recent trend in large-scale ML models is multimodal models that allow users to provide images that influence the text that is generated. We show these models can be easily attacked, i.e., induced to perform arbitrary un-aligned behavior through adversarial perturbation of the input image. We conjecture that improved NLP attacks may demonstrate this same level of adversarial control over text-only models.
Sciama's argument on life in a random universe: Distinguishing apples from oranges
Authors: Zhi-Wei Wang, Samuel L. Braunstein
Date: 2023-06-26 00:00:00

Dennis Sciama argued that the existence of life depended on many quantities, the fundamental constants, so in a random universe life should be highly unlikely. However, without full knowledge of these constants, his argument implies a universe that would appear to be `intelligently designed.'
Integrating Bidirectional Long Short-Term Memory with Subword Embedding for Authorship Attribution
Authors: Abiodun Modupe, Turgay Celik, Vukosi Marivate, Oludayo O. Olugbara
Date: 2023-06-26 00:00:00
Tasks: Authorship Attribution

The problem of unveiling the author of a given text document from multiple candidate authors is called authorship attribution. Manifold word-based stylistic markers have been successfully used in deep learning methods to deal with the intrinsic problem of authorship attribution. Unfortunately, the performance of word-based authorship attribution systems is limited by the vocabulary of the training corpus. Literature has recommended character-based stylistic markers as an alternative to overcome the hidden word problem. However, character-based methods often fail to capture the sequential relationship of words in texts which is a chasm for further improvement. The question addressed in this paper is whether it is possible to address the ambiguity of hidden words in text documents while preserving the sequential context of words. Consequently, a method based on bidirectional long short-term memory (BLSTM) with a 2-dimensional convolutional neural network (CNN) is proposed to capture sequential writing styles for authorship attribution. The BLSTM was used to obtain the sequential relationship among characteristics using subword information. The 2-dimensional CNN was applied to understand the local syntactical position of the style from unlabeled input text. The proposed method was experimentally evaluated against numerous state-of-the-art methods across the public corporal of CCAT50, IMDb62, Blog50, and Twitter50. Experimental results indicate accuracy improvement of 1.07\%, and 0.96\% on CCAT50 and Twitter, respectively, and produce comparable results on the remaining datasets.
LLM-Assisted Content Analysis: Using Large Language Models to Support Deductive Coding
Authors: Robert Chew, John Bollenbacher, Michael Wenger, Jessica Speer, Annice Kim
Date: 2023-06-23 00:00:00

Deductive coding is a widely used qualitative research method for determining the prevalence of themes across documents. While useful, deductive coding is often burdensome and time consuming since it requires researchers to read, interpret, and reliably categorize a large body of unstructured text documents. Large language models (LLMs), like ChatGPT, are a class of quickly evolving AI tools that can perform a range of natural language processing and reasoning tasks. In this study, we explore the use of LLMs to reduce the time it takes for deductive coding while retaining the flexibility of a traditional content analysis. We outline the proposed approach, called LLM-assisted content analysis (LACA), along with an in-depth case study using GPT-3.5 for LACA on a publicly available deductive coding data set. Additionally, we conduct an empirical benchmark using LACA on 4 publicly available data sets to assess the broader question of how well GPT-3.5 performs across a range of deductive coding tasks. Overall, we find that GPT-3.5 can often perform deductive coding at levels of agreement comparable to human coders. Additionally, we demonstrate that LACA can help refine prompts for deductive coding, identify codes for which an LLM is randomly guessing, and help assess when to use LLMs vs. human coders for deductive coding. We conclude with several implications for future practice of deductive coding and related research methods.
Molecular geometric deep learning
Authors: Cong Shen, Jiawei Luo, Kelin Xia
Date: 2023-06-22 00:00:00
Tasks: Deep Learning, Molecular Property Prediction, molecular representation, Property Prediction

Geometric deep learning (GDL) has demonstrated huge power and enormous potential in molecular data analysis. However, a great challenge still remains for highly efficient molecular representations. Currently, covalent-bond-based molecular graphs are the de facto standard for representing molecular topology at the atomic level. Here we demonstrate, for the first time, that molecular graphs constructed only from non-covalent bonds can achieve similar or even better results than covalent-bond-based models in molecular property prediction. This demonstrates the great potential of novel molecular representations beyond the de facto standard of covalent-bond-based molecular graphs. Based on the finding, we propose molecular geometric deep learning (Mol-GDL). The essential idea is to incorporate a more general molecular representation into GDL models. In our Mol-GDL, molecular topology is modeled as a series of molecular graphs, each focusing on a different scale of atomic interactions. In this way, both covalent interactions and non-covalent interactions are incorporated into the molecular representation on an equal footing. We systematically test Mol-GDL on fourteen commonly-used benchmark datasets. The results show that our Mol-GDL can achieve a better performance than state-of-the-art (SOTA) methods. Source code and data are available at https://github.com/CS-BIO/Mol-GDL.