pwc-archive/papers-with-abstracts huggingface dataset:
Mining Themes in Clinical Notes to Identify Phenotypes and to Predict Length of Stay in Patients admitted with Heart Failure
Authors: Ankita Agarwal, Tanvi Banerjee, William L. Romine, Krishnaprasad Thirunarayan, Lingwei Chen, Mia Cajita
Date: 2023-05-30 00:00:00
Tasks: Diagnostic, Predicting Patient Outcomes

Heart failure is a syndrome which occurs when the heart is not able to pump blood and oxygen to support other organs in the body. Identifying the underlying themes in the diagnostic codes and procedure reports of patients admitted for heart failure could reveal the clinical phenotypes associated with heart failure and to group patients based on their similar characteristics which could also help in predicting patient outcomes like length of stay. These clinical phenotypes usually have a probabilistic latent structure and hence, as there has been no previous work on identifying phenotypes in clinical notes of heart failure patients using a probabilistic framework and to predict length of stay of these patients using data-driven artificial intelligence-based methods, we apply natural language processing technique, topic modeling, to identify the themes present in diagnostic codes and in procedure reports of 1,200 patients admitted for heart failure at the University of Illinois Hospital and Health Sciences System (UI Health). Topic modeling identified twelve themes each in diagnostic codes and procedure reports which revealed information about different phenotypes related to various perspectives about heart failure, to study patients' profiles and to discover new relationships among medical concepts. Each theme had a set of keywords and each clinical note was labeled with two themes - one corresponding to its diagnostic code and the other corresponding to its procedure reports along with their percentage contribution. We used these themes and their percentage contribution to predict length of stay. We found that the themes discovered in diagnostic codes and procedure reports using topic modeling together were able to predict length of stay of the patients with an accuracy of 61.1% and an Area under the Receiver Operating Characteristic Curve (ROC AUC) value of 0.828.
Vision Transformers for Mobile Applications: A Short Survey
Authors: Nahid Alam, Steven Kolawole, Simardeep Sethi, Nishant Bansali, Karina Nguyen
Date: 2023-05-30 00:00:00
Tasks: Survey

Vision Transformers (ViTs) have demonstrated state-of-the-art performance on many Computer Vision Tasks. Unfortunately, deploying these large-scale ViTs is resource-consuming and impossible for many mobile devices. While most in the community are building for larger and larger ViTs, we ask a completely opposite question: How small can a ViT be within the tradeoffs of accuracy and inference latency that make it suitable for mobile deployment? We look into a few ViTs specifically designed for mobile applications and observe that they modify the transformer's architecture or are built around the combination of CNN and transformer. Recent work has also attempted to create sparse ViT networks and proposed alternatives to the attention module. In this paper, we study these architectures, identify the challenges and analyze what really makes a vision transformer suitable for mobile applications. We aim to serve as a baseline for future research direction and hopefully lay the foundation to choose the exemplary vision transformer architecture for your application running on mobile devices.
Stable Anisotropic Regularization
Authors: William Rudman, Carsten Eickhoff
Date: 2023-05-30 00:00:00

Given the success of Large Language Models (LLMs), there has been considerable interest in studying the properties of model activations. The literature overwhelmingly agrees that LLM representations are dominated by a few "outlier dimensions" with exceedingly high variance and magnitude. Several studies in Natural Language Processing (NLP) have sought to mitigate the impact of such outlier dimensions and force LLMs to be isotropic (i.e., have uniform variance across all dimensions in embedding space). Isotropy is thought to be a desirable property for LLMs that improves model performance and more closely aligns textual representations with human intuition. However, many of the claims regarding isotropy in NLP have been based on the average cosine similarity of embeddings, which has recently been shown to be a flawed measure of isotropy. In this paper, we propose I-STAR: IsoScore*-based STable Anisotropic Regularization, a novel regularization method that can be used to increase or decrease levels of isotropy in embedding space during training. I-STAR uses IsoScore*, the first accurate measure of isotropy that is both differentiable and stable on mini-batch computations. In contrast to several previous works, we find that decreasing isotropy in contextualized embeddings improves performance on the majority of tasks and models considered in this paper.
Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses
Authors: Liyan Tang, Yifan Peng, Yanshan Wang, Ying Ding, Greg Durrett, Justin F. Rousseau
Date: 2023-05-30 00:00:00
Tasks: Contrastive Learning, Decision Making, Text Generation

A human decision-maker benefits the most from an AI assistant that corrects for their biases. For problems such as generating interpretation of a radiology report given findings, a system predicting only highly likely outcomes may be less useful, where such outcomes are already obvious to the user. To alleviate biases in human decision-making, it is worth considering a broad differential diagnosis, going beyond the most likely options. We introduce a new task, "less likely brainstorming," that asks a model to generate outputs that humans think are relevant but less likely to happen. We explore the task in two settings: a brain MRI interpretation generation setting and an everyday commonsense reasoning setting. We found that a baseline approach of training with less likely hypotheses as targets generates outputs that humans evaluate as either likely or irrelevant nearly half of the time; standard MLE training is not effective. To tackle this problem, we propose a controlled text generation method that uses a novel contrastive learning strategy to encourage models to differentiate between generating likely and less likely outputs according to humans. We compare our method with several state-of-the-art controlled text generation models via automatic and human evaluations and show that our models' capability of generating less likely outputs is improved.
SheetCopilot: Bringing Software Productivity to the Next Level through Large Language Models
Date: 2023-05-30 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Benchmarking, Code Generation, Robot Task Planning, Scheduling, Task Planning

Computer end users have spent billions of hours completing daily tasks like tabular data processing and project timeline scheduling. Most of these tasks are repetitive and error-prone, yet most end users lack the skill to automate these burdensome works. With the advent of large language models (LLMs), directing software with natural language user requests become a reachable goal. In this work, we propose a SheetCopilot agent that takes natural language task and control spreadsheet to fulfill the requirements. We propose a set of atomic actions as an abstraction of spreadsheet software functionalities. We further design a state machine-based task planning framework for LLMs to robustly interact with spreadsheets. We curate a representative dataset containing 221 spreadsheet control tasks and establish a fully automated evaluation pipeline for rigorously benchmarking the ability of LLMs in software control tasks. Our SheetCopilot correctly completes 44.3\% of tasks for a single generation, outperforming the strong code generation baseline by a wide margin. Our project page:https://sheetcopilot.github.io/.
A Graph is Worth 1-bit Spikes: When Graph Contrastive Learning Meets Spiking Neural Networks
Authors: Jintang Li, Huizhe Zhang, Ruofan Wu, Zulun Zhu, Baokun Wang, Changhua Meng, Zibin Zheng, Liang Chen
Date: 2023-05-30 00:00:00
Tasks: Contrastive Learning, Self-Supervised Learning

While contrastive self-supervised learning has become the de-facto learning paradigm for graph neural networks, the pursuit of higher task accuracy requires a larger hidden dimensionality to learn informative and discriminative full-precision representations, raising concerns about computation, memory footprint, and energy consumption burden (largely overlooked) for real-world applications. This work explores a promising direction for graph contrastive learning (GCL) with spiking neural networks (SNNs), which leverage sparse and binary characteristics to learn more biologically plausible and compact representations. We propose SpikeGCL, a novel GCL framework to learn binarized 1-bit representations for graphs, making balanced trade-offs between efficiency and performance. We provide theoretical guarantees to demonstrate that SpikeGCL has comparable expressiveness with its full-precision counterparts. Experimental results demonstrate that, with nearly 32x representation storage compression, SpikeGCL is either comparable to or outperforms many fancy state-of-the-art supervised and self-supervised methods across several graph benchmarks.
Predicting protein stability changes under multiple amino acid substitutions using equivariant graph neural networks
Authors: Sebastien Boyer, Sam Money-Kyrle, Oliver Bent
Date: 2023-05-30 00:00:00
Tasks: Protein Stability Prediction

The accurate prediction of changes in protein stability under multiple amino acid substitutions is essential for realising true in-silico protein re-design. To this purpose, we propose improvements to state-of-the-art Deep learning (DL) protein stability prediction models, enabling first-of-a-kind predictions for variable numbers of amino acid substitutions, on structural representations, by decoupling the atomic and residue scales of protein representations. This was achieved using E(3)-equivariant graph neural networks (EGNNs) for both atomic environment (AE) embedding and residue-level scoring tasks. Our AE embedder was used to featurise a residue-level graph, then trained to score mutant stability ($\Delta\Delta G$). To achieve effective training of this predictive EGNN we have leveraged the unprecedented scale of a new high-throughput protein stability experimental data-set, Mega-scale. Finally, we demonstrate the immediately promising results of this procedure, discuss the current shortcomings, and highlight potential future strategies.
Perimeter Control Using Deep Reinforcement Learning: A Model-free Approach towards Homogeneous Flow Rate Optimization
Authors: Xiaocan Li, Ray Coden Mercurius, Ayal Taitler, Xiaoyu Wang, Mohammad Noaeen, Scott Sanner, Baher Abdulhai
Date: 2023-05-29 00:00:00
Tasks: Deep Reinforcement Learning, reinforcement-learning, Reinforcement Learning

Perimeter control maintains high traffic efficiency within protected regions by controlling transfer flows among regions to ensure that their traffic densities are below critical values. Existing approaches can be categorized as either model-based or model-free, depending on whether they rely on network transmission models (NTMs) and macroscopic fundamental diagrams (MFDs). Although model-based approaches are more data efficient and have performance guarantees, they are inherently prone to model bias and inaccuracy. For example, NTMs often become imprecise for a large number of protected regions, and MFDs can exhibit scatter and hysteresis that are not captured in existing model-based works. Moreover, no existing studies have employed reinforcement learning for homogeneous flow rate optimization in microscopic simulation, where spatial characteristics, vehicle-level information, and metering realizations -- often overlooked in macroscopic simulations -- are taken into account. To circumvent issues of model-based approaches and macroscopic simulation, we propose a model-free deep reinforcement learning approach that optimizes the flow rate homogeneously at the perimeter at the microscopic level. Results demonstrate that our model-free reinforcement learning approach without any knowledge of NTMs or MFDs can compete and match the performance of a model-based approach, and exhibits enhanced generalizability and scalability.
Humans in 4D: Reconstructing and Tracking Humans with Transformers
Authors: Shubham Goel, Georgios Pavlakos, Jathushan Rajasegaran, Angjoo Kanazawa, Jitendra Malik
Date: 2023-05-31 00:00:00
Proceeding: ICCV 2023 1
Tasks: 3D Human Pose Estimation, Action Recognition, Human Mesh Recovery, Pose Tracking

We present an approach to reconstruct humans and track them over time. At the core of our approach, we propose a fully "transformerized" version of a network for human mesh recovery. This network, HMR 2.0, advances the state of the art and shows the capability to analyze unusual poses that have in the past been difficult to reconstruct from single images. To analyze video, we use 3D reconstructions from HMR 2.0 as input to a tracking system that operates in 3D. This enables us to deal with multiple people and maintain identities through occlusion events. Our complete approach, 4DHumans, achieves state-of-the-art results for tracking people from monocular video. Furthermore, we demonstrate the effectiveness of HMR 2.0 on the downstream task of action recognition, achieving significant improvements over previous pose-based action recognition approaches. Our code and models are available on the project website: https://shubham-goel.github.io/4dhumans/.
Learning Explicit Contact for Implicit Reconstruction of Hand-held Objects from Monocular Images
Authors: Junxing Hu, Hongwen Zhang, Zerui Chen, Mengcheng Li, Yunlong Wang, Yebin Liu, Zhenan Sun
Date: 2023-05-31 00:00:00
Tasks: 3D geometry, Object

Reconstructing hand-held objects from monocular RGB images is an appealing yet challenging task. In this task, contacts between hands and objects provide important cues for recovering the 3D geometry of the hand-held objects. Though recent works have employed implicit functions to achieve impressive progress, they ignore formulating contacts in their frameworks, which results in producing less realistic object meshes. In this work, we explore how to model contacts in an explicit way to benefit the implicit reconstruction of hand-held objects. Our method consists of two components: explicit contact prediction and implicit shape reconstruction. In the first part, we propose a new subtask of directly estimating 3D hand-object contacts from a single image. The part-level and vertex-level graph-based transformers are cascaded and jointly learned in a coarse-to-fine manner for more accurate contact probabilities. In the second part, we introduce a novel method to diffuse estimated contact states from the hand mesh surface to nearby 3D space and leverage diffused contact probabilities to construct the implicit neural representation for the manipulated object. Benefiting from estimating the interaction patterns between the hand and the object, our method can reconstruct more realistic object meshes, especially for object parts that are in contact with hands. Extensive experiments on challenging benchmarks show that the proposed method outperforms the current state of the arts by a great margin. Our code is publicly available at https://junxinghu.github.io/projects/hoi.html.
Too Large; Data Reduction for Vision-Language Pre-Training
Authors: Alex Jinpeng Wang, Kevin Qinghong Lin, David Junhao Zhang, Stan Weixian Lei, Mike Zheng Shou
Date: 2023-05-31 00:00:00
Proceeding: ICCV 2023 1
Tasks: Decoder

This paper examines the problems of severe image-text misalignment and high redundancy in the widely-used large-scale Vision-Language Pre-Training (VLP) datasets. To address these issues, we propose an efficient and straightforward Vision-Language learning algorithm called TL;DR, which aims to compress the existing large VLP data into a small, high-quality set. Our approach consists of two major steps. First, a codebook-based encoder-decoder captioner is developed to select representative samples. Second, a new caption is generated to complement the original captions for selected samples, mitigating the text-image misalignment problem while maintaining uniqueness. As the result, TL;DR enables us to reduce the large dataset into a small set of high-quality data, which can serve as an alternative pre-training dataset. This algorithm significantly speeds up the time-consuming pretraining process. Specifically, TL;DR can compress the mainstream VLP datasets at a high ratio, e.g., reduce well-cleaned CC3M dataset from 2.82M to 0.67M ($\sim$24\%) and noisy YFCC15M from 15M to 2.5M ($\sim$16.7\%). Extensive experiments with three popular VLP models over seven downstream tasks show that VLP model trained on the compressed dataset provided by TL;DR can perform similar or even better results compared with training on the full-scale dataset. The code will be made available at \url{https://github.com/showlab/datacentric.vlp}.
Control4D: Efficient 4D Portrait Editing with Text
Authors: Ruizhi Shao, Jingxiang Sun, Cheng Peng, Zerong Zheng, Boyao Zhou, Hongwen Zhang, Yebin Liu
Date: 2023-05-31 00:00:00
Proceeding: CVPR 2024 1

We introduce Control4D, an innovative framework for editing dynamic 4D portraits using text instructions. Our method addresses the prevalent challenges in 4D editing, notably the inefficiencies of existing 4D representations and the inconsistent editing effect caused by diffusion-based editors. We first propose GaussianPlanes, a novel 4D representation that makes Gaussian Splatting more structured by applying plane-based decomposition in 3D space and time. This enhances both efficiency and robustness in 4D editing. Furthermore, we propose to leverage a 4D generator to learn a more continuous generation space from inconsistent edited images produced by the diffusion-based editor, which effectively improves the consistency and quality of 4D editing. Comprehensive evaluation demonstrates the superiority of Control4D, including significantly reduced training time, high-quality rendering, and spatial-temporal consistency in 4D portrait editing. The link to our project website is https://control4darxiv.github.io.
Exploring Regions of Interest: Visualizing Histological Image Classification for Breast Cancer using Deep Learning
Authors: Imane Nedjar, Mohammed Brahimi, Said Mahmoudi, Khadidja Abi Ayad, Mohammed Amine Chikh
Date: 2023-05-31 00:00:00
Tasks: Breast Cancer Detection, image-classification, Image Classification

Computer aided detection and diagnosis systems based on deep learning have shown promising performance in breast cancer detection. However, there are cases where the obtained results lack justification. In this study, our objective is to highlight the regions of interest used by a convolutional neural network (CNN) for classifying histological images as benign or malignant. We compare these regions with the regions identified by pathologists. To achieve this, we employed the VGG19 architecture and tested three visualization methods: Gradient, LRP Z, and LRP Epsilon. Additionally, we experimented with three pixel selection methods: Bins, K-means, and MeanShift. Based on the results obtained, the Gradient visualization method and the MeanShift selection method yielded satisfactory outcomes for visualizing the images.
Cross-Domain Car Detection Model with Integrated Convolutional Block Attention Mechanism
Authors: Haoxuan Xu, Songning Lai, Xianyang Li, Yang Yang
Date: 2023-05-31 00:00:00
Tasks: Autonomous Driving, object-detection, Object Detection

Car detection, particularly through camera vision, has become a major focus in the field of computer vision and has gained widespread adoption. While current car detection systems are capable of good detection, reliable detection can still be challenging due to factors such as proximity between the car, light intensity, and environmental visibility. To address these issues, we propose cross-domain Car Detection Model with integrated convolutional block Attention mechanism(CDMA) that we apply to car recognition for autonomous driving and other areas. CDMA includes several novelties: 1)Building a complete cross-domain target detection framework. 2)Developing an unpaired target domain picture generation module with an integrated convolutional attention mechanism which specifically emphasizes the car headlights feature. 3)Adopting Generalized Intersection over Union (GIOU) as the loss function of the target detection framework. 4)Designing an object detection model integrated with two-headed Convolutional Block Attention Module(CBAM). 5)Utilizing an effective data enhancement method. To evaluate the model's effectiveness, we performed a reduced will resolution process on the data in the SSLAD dataset and used it as the benchmark dataset for our task. Experimental results show that the performance of the cross-domain car target detection model improves by 40% over the model without our framework, and our improvements have a significant impact on cross-domain car recognition.
Integrated Decision Gradients: Compute Your Attributions Where the Model Makes Its Decision
Authors: Chase Walker, Sumit Jha, Kenny Chen, Rickard Ewetz
Date: 2023-05-31 00:00:00

Attribution algorithms are frequently employed to explain the decisions of neural network models. Integrated Gradients (IG) is an influential attribution method due to its strong axiomatic foundation. The algorithm is based on integrating the gradients along a path from a reference image to the input image. Unfortunately, it can be observed that gradients computed from regions where the output logit changes minimally along the path provide poor explanations for the model decision, which is called the saturation effect problem. In this paper, we propose an attribution algorithm called integrated decision gradients (IDG). The algorithm focuses on integrating gradients from the region of the path where the model makes its decision, i.e., the portion of the path where the output logit rapidly transitions from zero to its final value. This is practically realized by scaling each gradient by the derivative of the output logit with respect to the path. The algorithm thereby provides a principled solution to the saturation problem. Additionally, we minimize the errors within the Riemann sum approximation of the path integral by utilizing non-uniform subdivisions determined by adaptive sampling. In the evaluation on ImageNet, it is demonstrated that IDG outperforms IG, Left-IG, Guided IG, and adversarial gradient integration both qualitatively and quantitatively using standard insertion and deletion metrics across three common models.
A Unified Conditional Framework for Diffusion-based Image Restoration
Date: 2023-05-31 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Deblurring, Denoising, Image Generation, Image Restoration

Diffusion Probabilistic Models (DPMs) have recently shown remarkable performance in image generation tasks, which are capable of generating highly realistic images. When adopting DPMs for image restoration tasks, the crucial aspect lies in how to integrate the conditional information to guide the DPMs to generate accurate and natural output, which has been largely overlooked in existing works. In this paper, we present a unified conditional framework based on diffusion models for image restoration. We leverage a lightweight UNet to predict initial guidance and the diffusion model to learn the residual of the guidance. By carefully designing the basic module and integration module for the diffusion model block, we integrate the guidance and other auxiliary conditional information into every block of the diffusion model to achieve spatially-adaptive generation conditioning. To handle high-resolution images, we propose a simple yet effective inter-step patch-splitting strategy to produce arbitrary-resolution images without grid artifacts. We evaluate our conditional framework on three challenging tasks: extreme low-light denoising, deblurring, and JPEG restoration, demonstrating its significant improvements in perceptual quality and the generalization to restoration tasks.