pwc-archive/papers-with-abstracts huggingface dataset:
An Open-Source Knowledge Graph Ecosystem for the Life Sciences
Authors: Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr, Lawrence E. Hunter
Date: 2023-07-11 00:00:00
Tasks: Knowledge Graphs

Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenges. Knowledge graphs (KGs) are used to model complex phenomena, and methods exist to construct them automatically. However, tackling complex biomedical integration problems requires flexibility in the way knowledge is modeled. Moreover, existing KG construction methods provide robust tooling at the cost of fixed or limited choices among knowledge representation models. PheKnowLator (Phenotype Knowledge Translator) is a semantic ecosystem for automating the FAIR (Findable, Accessible, Interoperable, and Reusable) construction of ontologically grounded KGs with fully customizable knowledge representation. The ecosystem includes KG construction resources (e.g., data preparation APIs), analysis tools (e.g., SPARQL endpoints and abstraction algorithms), and benchmarks (e.g., prebuilt KGs and embeddings). We evaluated the ecosystem by systematically comparing it to existing open-source KG construction methods and by analyzing its computational performance when used to construct 12 large-scale KGs. With flexible knowledge representation, PheKnowLator enables fully customizable KGs without compromising performance or usability.
A Causal Ordering Prior for Unsupervised Representation Learning
Authors: Avinash Kori, Pedro Sanchez, Konstantinos Vilouras, Ben Glocker, Sotirios A. Tsaftaris
Date: 2023-07-11 00:00:00
Tasks: Causal Discovery, counterfactual, Representation Learning, Variational Inference

Unsupervised representation learning with variational inference relies heavily on independence assumptions over latent variables. Causal representation learning (CRL), however, argues that factors of variation in a dataset are, in fact, causally related. Allowing latent variables to be correlated, as a consequence of causal relationships, is more realistic and generalisable. So far, provably identifiable methods rely on: auxiliary information, weak labels, and interventional or even counterfactual data. Inspired by causal discovery with functional causal models, we propose a fully unsupervised representation learning method that considers a data generation process with a latent additive noise model (ANM). We encourage the latent space to follow a causal ordering via loss function based on the Hessian of the latent distribution.
Objaverse-XL: A Universe of 10M+ 3D Objects
Date: 2023-07-11 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Diversity, Novel View Synthesis, Zero-shot Generalization

Natural language processing and 2D vision models have attained remarkable proficiency on many tasks primarily by escalating the scale of training data. However, 3D vision tasks have not seen the same progress, in part due to the challenges of acquiring high-quality 3D data. In this work, we present Objaverse-XL, a dataset of over 10 million 3D objects. Our dataset comprises deduplicated 3D objects from a diverse set of sources, including manually designed objects, photogrammetry scans of landmarks and everyday items, and professional scans of historic and antique artifacts. Representing the largest scale and diversity in the realm of 3D datasets, Objaverse-XL enables significant new possibilities for 3D vision. Our experiments demonstrate the improvements enabled with the scale provided by Objaverse-XL. We show that by training Zero123 on novel view synthesis, utilizing over 100 million multi-view rendered images, we achieve strong zero-shot generalization abilities. We hope that releasing Objaverse-XL will enable further innovations in the field of 3D vision at scale.
Multiobjective Hydropower Reservoir Operation Optimization with Transformer-Based Deep Reinforcement Learning
Authors: Rixin Wu, Ran Wang, Jie Hao, Qiang Wu, Ping Wang
Date: 2023-07-11 00:00:00
Tasks: Decoder, Deep Reinforcement Learning, Management, reinforcement-learning, Reinforcement Learning

Due to shortage of water resources and increasing water demands, the joint operation of multireservoir systems for balancing power generation, ecological protection, and the residential water supply has become a critical issue in hydropower management. However, the numerous constraints and nonlinearity of multiple reservoirs make solving this problem time-consuming. To address this challenge, a deep reinforcement learning approach that incorporates a transformer framework is proposed. The multihead attention mechanism of the encoder effectively extracts information from reservoirs and residential areas, and the multireservoir attention network of the decoder generates suitable operational decisions. The proposed method is applied to Lake Mead and Lake Powell in the Colorado River Basin. The experimental results demonstrate that the transformer-based deep reinforcement learning approach can produce appropriate operational outcomes. Compared to a state-of-the-art method, the operation strategies produced by the proposed approach generate 10.11% more electricity, reduce the amended annual proportional flow deviation by 39.69%, and increase water supply revenue by 4.10%. Consequently, the proposed approach offers an effective method for the multiobjective operation of multihydropower reservoir systems.
Learning Active Subspaces and Discovering Important Features with Gaussian Radial Basis Functions Neural Networks
Authors: Danny D'Agostino, Ilija Ilievski, Christine Annette Shoemaker
Date: 2023-07-11 00:00:00
Tasks: Decision Making, Dimensionality Reduction, feature selection, Supervised dimensionality reduction

Providing a model that achieves a strong predictive performance and is simultaneously interpretable by humans is one of the most difficult challenges in machine learning research due to the conflicting nature of these two objectives. To address this challenge, we propose a modification of the radial basis function neural network model by equipping its Gaussian kernel with a learnable precision matrix. We show that precious information is contained in the spectrum of the precision matrix that can be extracted once the training of the model is completed. In particular, the eigenvectors explain the directions of maximum sensitivity of the model revealing the active subspace and suggesting potential applications for supervised dimensionality reduction. At the same time, the eigenvectors highlight the relationship in terms of absolute variation between the input and the latent variables, thereby allowing us to extract a ranking of the input variables based on their importance to the prediction task enhancing the model interpretability. We conducted numerical experiments for regression, classification, and feature selection tasks, comparing our model against popular machine learning models, the state-of-the-art deep learning-based embedding feature selection techniques, and a transformer model for tabular data. Our results demonstrate that the proposed model does not only yield an attractive prediction performance compared to the competitors but also provides meaningful and interpretable results that potentially could assist the decision-making process in real-world applications. A PyTorch implementation of the model is available on GitHub at the following link. https://github.com/dannyzx/Gaussian-RBFNN
A Comprehensive Survey of Deep Transfer Learning for Anomaly Detection in Industrial Time Series: Methods, Applications, and Directions
Authors: Peng Yan, Ahmed Abdulkadir, Paul-Philipp Luley, Matthias Rosenthal, Gerrit A. Schatte, Benjamin F. Grewe, Thilo Stadelmann
Date: 2023-07-11 00:00:00
Tasks: Anomaly Detection, Deep Learning, energy management, Time Series, Time Series Anomaly Detection, Transfer Learning

Automating the monitoring of industrial processes has the potential to enhance efficiency and optimize quality by promptly detecting abnormal events and thus facilitating timely interventions. Deep learning, with its capacity to discern non-trivial patterns within large datasets, plays a pivotal role in this process. Standard deep learning methods are suitable to solve a specific task given a specific type of data. During training, deep learning demands large volumes of labeled data. However, due to the dynamic nature of the industrial processes and environment, it is impractical to acquire large-scale labeled data for standard deep learning training for every slightly different case anew. Deep transfer learning offers a solution to this problem. By leveraging knowledge from related tasks and accounting for variations in data distributions, the transfer learning framework solves new tasks with little or even no additional labeled data. The approach bypasses the need to retrain a model from scratch for every new setup and dramatically reduces the labeled data requirement. This survey first provides an in-depth review of deep transfer learning, examining the problem settings of transfer learning and classifying the prevailing deep transfer learning methods. Moreover, we delve into applications of deep transfer learning in the context of a broad spectrum of time series anomaly detection tasks prevalent in primary industrial domains, e.g., manufacturing process monitoring, predictive maintenance, energy management, and infrastructure facility monitoring. We discuss the challenges and limitations of deep transfer learning in industrial contexts and conclude the survey with practical directions and actionable suggestions to address the need to leverage diverse time series data for anomaly detection in an increasingly dynamic production environment.
Belief Revision from Probability
Authors: Jeremy Goodman, Bernhard Salow
Date: 2023-07-11 00:00:00
Tasks: valid

In previous work ("Knowledge from Probability", TARK 2021) we develop a question-relative, probabilistic account of belief. On this account, what someone believes relative to a given question is (i) closed under entailment, (ii) sufficiently probable given their evidence, and (iii) sensitive to the relative probabilities of the answers to the question. Here we explore the implications of this account for the dynamics of belief. We show that the principles it validates are much weaker than those of orthodox theories of belief revision like AGM, but still stronger than those valid according to the popular Lockean theory of belief, which equates belief with high subjective probability. We then consider a restricted class of models, suitable for many but not all applications, and identify some further natural principles valid on this class. We conclude by arguing that the present framework compares favorably to the rival probabilistic accounts of belief developed by Leitgeb and by Lin and Kelly.
Causal Kripke Models
Authors: Yiwen Ding, Krishna Manoorkar, Apostolos Tzimoulis, Ruoding Wang, Xiaolong Wang
Date: 2023-07-11 00:00:00

This work extends Halpern and Pearl's causal models for actual causality to a possible world semantics environment. Using this framework we introduce a logic of actual causality with modal operators, which allows for reasoning about causality in scenarios involving multiple possibilities, temporality, knowledge and uncertainty. We illustrate this with a number of examples, and conclude by discussing some future directions for research.
Characterization of AGM Belief Contraction in Terms of Conditionals
Authors: Giacomo Bonanno
Date: 2023-07-11 00:00:00

We provide a semantic characterization of AGM belief contraction based on frames consisting of a Kripke belief relation and a Stalnaker-Lewis selection function. The central idea is as follows. Let K be the initial belief set and K-A be the contraction of K by the formula A; then B belongs to the set K-A if and only if, at the actual state, the agent believes B and believes that if not-A is (were) the case then B is (would be) the case.
CILF:Causality Inspired Learning Framework for Out-of-Distribution Vehicle Trajectory Prediction
Authors: Shengyi Li, Qifan Xue, Yezhuo Zhang, Xuanpeng Li
Date: 2023-07-11 00:00:00
Tasks: Autonomous Driving, Contrastive Learning, Domain Generalization, Prediction, Trajectory Prediction

Trajectory prediction is critical for autonomous driving vehicles. Most existing methods tend to model the correlation between history trajectory (input) and future trajectory (output). Since correlation is just a superficial description of reality, these methods rely heavily on the i.i.d. assumption and evince a heightened susceptibility to out-of-distribution data. To address this problem, we propose an Out-of- Distribution Causal Graph (OOD-CG), which explicitly defines the underlying causal structure of the data with three entangled latent features: 1) domain-invariant causal feature (IC), 2) domain-variant causal feature (VC), and 3) domain-variant non-causal feature (VN ). While these features are confounded by confounder (C) and domain selector (D). To leverage causal features for prediction, we propose a Causal Inspired Learning Framework (CILF), which includes three steps: 1) extracting domain-invariant causal feature by means of an invariance loss, 2) extracting domain variant feature by domain contrastive learning, and 3) separating domain-variant causal and non-causal feature by encouraging causal sufficiency. We evaluate the performance of CILF in different vehicle trajectory prediction models on the mainstream datasets NGSIM and INTERACTION. Experiments show promising improvements in CILF on domain generalization.
A DeepLearning Framework for Dynamic Estimation of Origin-Destination Sequence
Authors: Zheli Xiong, Defu Lian, Enhong Chen, Gang Chen, Xiaomin Cheng
Date: 2023-07-11 00:00:00

OD matrix estimation is a critical problem in the transportation domain. The principle method uses the traffic sensor measured information such as traffic counts to estimate the traffic demand represented by the OD matrix. The problem is divided into two categories: static OD matrix estimation and dynamic OD matrices sequence(OD sequence for short) estimation. The above two face the underdetermination problem caused by abundant estimated parameters and insufficient constraint information. In addition, OD sequence estimation also faces the lag challenge: due to different traffic conditions such as congestion, identical vehicle will appear on different road sections during the same observation period, resulting in identical OD demands correspond to different trips. To this end, this paper proposes an integrated method, which uses deep learning methods to infer the structure of OD sequence and uses structural constraints to guide traditional numerical optimization. Our experiments show that the neural network(NN) can effectively infer the structure of the OD sequence and provide practical constraints for numerical optimization to obtain better results. Moreover, the experiments show that provided structural information contains not only constraints on the spatial structure of OD matrices but also provides constraints on the temporal structure of OD sequence, which solve the effect of the lagging problem well.
Impact of Feature Encoding on Malware Classification Explainability
Authors: Elyes Manai, Mohamed Mejri, Jaouhar Fattahi
Date: 2023-07-10 00:00:00
Tasks: Classification, Explainable artificial intelligence, Explainable Artificial Intelligence (XAI), Malware Classification

This paper investigates the impact of feature encoding techniques on the explainability of XAI (Explainable Artificial Intelligence) algorithms. Using a malware classification dataset, we trained an XGBoost model and compared the performance of two feature encoding methods: Label Encoding (LE) and One Hot Encoding (OHE). Our findings reveal a marginal performance loss when using OHE instead of LE. However, the more detailed explanations provided by OHE compensated for this loss. We observed that OHE enables deeper exploration of details in both global and local contexts, facilitating more comprehensive answers. Additionally, we observed that using OHE resulted in smaller explanation files and reduced analysis time for human analysts. These findings emphasize the significance of considering feature encoding techniques in XAI research and suggest potential for further exploration by incorporating additional encoding methods and innovative visualization approaches.
Substance or Style: What Does Your Image Embedding Know?
Authors: Cyrus Rashtchian, Charles Herrmann, Chun-Sung Ferng, Ayan Chakrabarti, Dilip Krishnan, Deqing Sun, Da-Cheng Juan, Andrew Tomkins
Date: 2023-07-10 00:00:00
Tasks: Style Transfer

Probes are small networks that predict properties of underlying data from embeddings, and they provide a targeted, effective way to illuminate the information contained in embeddings. While analysis through the use of probes has become standard in NLP, there has been much less exploration in vision. Image foundation models have primarily been evaluated for semantic content. Better understanding the non-semantic information in popular embeddings (e.g., MAE, SimCLR, or CLIP) will shed new light both on the training algorithms and on the uses for these foundation models. We design a systematic transformation prediction task and measure the visual content of embeddings along many axes, including image style, quality, and a range of natural and artificial transformations. Surprisingly, six embeddings (including SimCLR) encode enough non-semantic information to identify dozens of transformations. We also consider a generalization task, where we group similar transformations and hold out several for testing. We find that image-text models (CLIP and ALIGN) are better at recognizing new examples of style transfer than masking-based models (CAN and MAE). Overall, our results suggest that the choice of pre-training algorithm impacts the types of information in the embedding, and certain models are better than others for non-semantic downstream tasks.
Active Learning for Video Classification with Frame Level Queries
Authors: Debanjan Goswami, Shayok Chakraborty
Date: 2023-07-10 00:00:00
Proceeding: International Joint Conference on Neural Networks (IJCNN) 2023 8
Tasks: Active Learning, Classification, Video Classification

Deep learning algorithms have pushed the boundaries of computer vision research and have depicted commendable performance in a variety of applications. However, training a robust deep neural network necessitates a large amount of labeled training data, acquiring which involves significant time and human effort. This problem is even more serious for an application like video classification, where a human annotator has to watch an entire video end-to-end to furnish a label. Active learning algorithms automatically identify the most informative samples from large amounts of unlabeled data; this tremendously reduces the human annotation effort in inducing a machine learning model, as only the few samples that are identified by the algorithm, need to be labeled manually. In this paper, we propose a novel active learning framework for video classification, with the goal of further reducing the labeling onus on the human annotators. Our framework identifies a batch of exemplar videos, together with a set of informative frames for each video; the human annotator needs to merely review the frames and provide a label for each video. This involves much less manual work than watching the complete video to come up with a label. We formulate a criterion based on uncertainty and diversity to identify the informative videos and exploit representative sampling techniques to extract a set of exemplar frames from each video. To the best of our knowledge, this is the first research effort to develop an active learning framework for video classification, where the annotators need to inspect only a few frames to produce a label, rather than watching the end-to-end video.
Code Generation for Machine Learning using Model-Driven Engineering and SysML
Authors: Simon Raedler, Matthias Rupp, Eugen Rigger, Stefanie Rinderle-Ma
Date: 2023-07-10 00:00:00
Tasks: Code Generation

Data-driven engineering refers to systematic data collection and processing using machine learning to improve engineering systems. Currently, the implementation of data-driven engineering relies on fundamental data science and software engineering skills. At the same time, model-based engineering is gaining relevance for the engineering of complex systems. In previous work, a model-based engineering approach integrating the formalization of machine learning tasks using the general-purpose modeling language SysML is presented. However, formalized machine learning tasks still require the implementation in a specialized programming languages like Python. Therefore, this work aims to facilitate the implementation of data-driven engineering in practice by extending the previous work of formalizing machine learning tasks by integrating model transformation to generate executable code. The method focuses on the modifiability and maintainability of the model transformation so that extensions and changes to the code generation can be integrated without requiring modifications to the code generator. The presented method is evaluated for feasibility in a case study to predict weather forecasts. Based thereon, quality attributes of model transformations are assessed and discussed. Results demonstrate the flexibility and the simplicity of the method reducing efforts for implementation. Further, the work builds a theoretical basis for standardizing data-driven engineering implementation in practice.
DBFed: Debiasing Federated Learning Framework based on Domain-Independent
Authors: Jiale Li, Zhixin Li, Yibo Wang, Yao Li, Lei Wang
Date: 2023-07-10 00:00:00
Tasks: Fairness, Federated Learning, Privacy Preserving

As digital transformation continues, enterprises are generating, managing, and storing vast amounts of data, while artificial intelligence technology is rapidly advancing. However, it brings challenges in information security and data security. Data security refers to the protection of digital information from unauthorized access, damage, theft, etc. throughout its entire life cycle. With the promulgation and implementation of data security laws and the emphasis on data security and data privacy by organizations and users, Privacy-preserving technology represented by federated learning has a wide range of application scenarios. Federated learning is a distributed machine learning computing framework that allows multiple subjects to train joint models without sharing data to protect data privacy and solve the problem of data islands. However, the data among multiple subjects are independent of each other, and the data differences in quality may cause fairness issues in federated learning modeling, such as data bias among multiple subjects, resulting in biased and discriminatory models. Therefore, we propose DBFed, a debiasing federated learning framework based on domain-independent, which mitigates model bias by explicitly encoding sensitive attributes during client-side training. This paper conducts experiments on three real datasets and uses five evaluation metrics of accuracy and fairness to quantify the effect of the model. Most metrics of DBFed exceed those of the other three comparative methods, fully demonstrating the debiasing effect of DBFed.