pwc-archive/papers-with-abstracts huggingface dataset:
Novel application of Relief Algorithm in cascaded artificial neural network to predict wind speed for wind power resource assessment in India
Authors: Hasmat Malik, Amit Kumar Yadav, Fausto Pedro García Márquez, Jesús María Pinar-Pérez
Date: 2024-01-25 00:00:00
Tasks: feature selection, Prediction

Wind power generated by wind has non-schedule nature due to stochastic nature of meteorological variable. Hence energy business and control of wind power generation requires prediction of wind speed (WS) from few seconds to different time steps in advance. To deal with prediction shortcomings, various WS prediction methods have been used. Predictive data mining offers variety of methods for WS predictions where artificial neural network (ANN) is one of the reliable and accurate methods. It is observed from the result of this study that ANN gives better accuracy in comparison conventional model. The accuracy of WS prediction models is found to be dependent on input parameters and architecture type algorithms utilized. So the selection of most relevant input parameters is important research area in WS predicton field. The objective of the paper is twofold: first extensive review of ANN for wind power and WS prediction is carried out. Discussion and analysis of feature selection using Relief Algorithm (RA) in WS prediction are considered for different Indian sites. RA identify atmospheric pressure, solar radiation and relative humidity are relevant input variables. Based on relevant input variables Cascade ANN model is developed and prediction accuracy is evaluated. It is found that root mean square error (RMSE) for comparison between predicted and measured WS for training and testing wind speed are found to be 1.44 m/s and 1.49 m/s respectively. The developed cascade ANN model can be used to predict wind speed for sites where there are not WS measuring instruments are installed in India.
Novel Quadratic Constraints for Extending LipSDP beyond Slope-Restricted Activations
Authors: Patricia Pauli, Aaron Havens, Alexandre Araujo, Siddharth Garg, Farshad Khorrami, Frank Allgöwer, Bin Hu
Date: 2024-01-25 00:00:00

Recently, semidefinite programming (SDP) techniques have shown great promise in providing accurate Lipschitz bounds for neural networks. Specifically, the LipSDP approach (Fazlyab et al., 2019) has received much attention and provides the least conservative Lipschitz upper bounds that can be computed with polynomial time guarantees. However, one main restriction of LipSDP is that its formulation requires the activation functions to be slope-restricted on $[0,1]$, preventing its further use for more general activation functions such as GroupSort, MaxMin, and Householder. One can rewrite MaxMin activations for example as residual ReLU networks. However, a direct application of LipSDP to the resultant residual ReLU networks is conservative and even fails in recovering the well-known fact that the MaxMin activation is 1-Lipschitz. Our paper bridges this gap and extends LipSDP beyond slope-restricted activation functions. To this end, we provide novel quadratic constraints for GroupSort, MaxMin, and Householder activations via leveraging their underlying properties such as sum preservation. Our proposed analysis is general and provides a unified approach for estimating $\ell_2$ and $\ell_\infty$ Lipschitz bounds for a rich class of neural network architectures, including non-residual and residual neural networks and implicit models, with GroupSort, MaxMin, and Householder activations. Finally, we illustrate the utility of our approach with a variety of experiments and show that our proposed SDPs generate less conservative Lipschitz bounds in comparison to existing approaches.
Towards a Systems Theory of Algorithms
Authors: Florian Dörfler, Zhiyu He, Giuseppe Belgioioso, Saverio Bolognani, John Lygeros, Michael Muehlebach
Date: 2024-01-25 00:00:00
Tasks: Decision Making

Traditionally, numerical algorithms are seen as isolated pieces of code confined to an {\em in silico} existence. However, this perspective is not appropriate for many modern computational approaches in control, learning, or optimization, wherein {\em in vivo} algorithms interact with their environment. Examples of such {\em open algorithms} include various real-time optimization-based control strategies, reinforcement learning, decision-making architectures, online optimization, and many more. Further, even {\em closed} algorithms in learning or optimization are increasingly abstracted in block diagrams with interacting dynamic modules and pipelines. In this opinion paper, we state our vision on a to-be-cultivated {\em systems theory of algorithms} and argue in favor of viewing algorithms as open dynamical systems interacting with other algorithms, physical systems, humans, or databases. Remarkably, the manifold tools developed under the umbrella of systems theory are well suited for addressing a range of challenges in the algorithmic domain. We survey various instances where the principles of algorithmic systems theory are being developed and outline pertinent modeling, analysis, and design challenges.
The Risk of Federated Learning to Skew Fine-Tuning Features and Underperform Out-of-Distribution Robustness
Authors: Mengyao Du, Miao Zhang, Yuwen Pu, Kai Xu, Shouling Ji, Quanjun Yin
Date: 2024-01-25 00:00:00
Tasks: Diversity, Federated Learning, parameter-efficient fine-tuning

To tackle the scarcity and privacy issues associated with domain-specific datasets, the integration of federated learning in conjunction with fine-tuning has emerged as a practical solution. However, our findings reveal that federated learning has the risk of skewing fine-tuning features and compromising the out-of-distribution robustness of the model. By introducing three robustness indicators and conducting experiments across diverse robust datasets, we elucidate these phenomena by scrutinizing the diversity, transferability, and deviation within the model feature space. To mitigate the negative impact of federated learning on model robustness, we introduce GNP, a \underline{G}eneral \underline{N}oisy \underline{P}rojection-based robust algorithm, ensuring no deterioration of accuracy on the target distribution. Specifically, the key strategy for enhancing model robustness entails the transfer of robustness from the pre-trained model to the fine-tuned model, coupled with adding a small amount of Gaussian noise to augment the representative capacity of the model. Comprehensive experimental results demonstrate that our approach markedly enhances the robustness across diverse scenarios, encompassing various parameter-efficient fine-tuning methods and confronting different levels of data heterogeneity.
DNA Sequence Classification with Compressors
Authors: Şükrü Ozan
Date: 2024-01-25 00:00:00
Tasks: Classification

Recent studies in DNA sequence classification have leveraged sophisticated machine learning techniques, achieving notable accuracy in categorizing complex genomic data. Among these, methods such as k-mer counting have proven effective in distinguishing sequences from varied species like chimpanzees, dogs, and humans, becoming a staple in contemporary genomic research. However, these approaches often demand extensive computational resources, posing a challenge in terms of scalability and efficiency. Addressing this issue, our study introduces a novel adaptation of Jiang et al.'s compressor-based, parameter-free classification method, specifically tailored for DNA sequence analysis. This innovative approach utilizes a variety of compression algorithms, such as Gzip, Brotli, and LZMA, to efficiently process and classify genomic sequences. Not only does this method align with the current state-of-the-art in terms of accuracy, but it also offers a more resource-efficient alternative to traditional machine learning methods. Our comprehensive evaluation demonstrates the proposed method's effectiveness in accurately classifying DNA sequences from multiple species. We present a detailed analysis of the performance of each algorithm used, highlighting the strengths and limitations of our approach in various genomic contexts. Furthermore, we discuss the broader implications of our findings for bioinformatics, particularly in genomic data processing and analysis. The results of our study pave the way for more efficient and scalable DNA sequence classification methods, offering significant potential for advancements in genomic research and applications.
Accelerating Retrieval-Augmented Language Model Serving with Speculation
Authors: Zhihao Zhang, Alan Zhu, Lijie Yang, Yihua Xu, LanTing LI, Phitchaya Mangpo Phothilimthana, Zhihao Jia
Date: 2024-01-25 00:00:00
Tasks: Language Modeling, Language Modelling, model, Retrieval

Retrieval-augmented language models (RaLM) have demonstrated the potential to solve knowledge-intensive natural language processing (NLP) tasks by combining a non-parametric knowledge base with a parametric language model. Instead of fine-tuning a fully parametric model, RaLM excels at its low-cost adaptation to the latest data and better source attribution mechanisms. Among various RaLM approaches, iterative RaLM delivers a better generation quality due to a more frequent interaction between the retriever and the language model. Despite the benefits, iterative RaLM usually encounters high overheads due to the frequent retrieval step. To this end, we propose RaLMSpec, a speculation-inspired framework that provides generic speed-up over iterative RaLM while preserving the same model outputs through speculative retrieval and batched verification. By further incorporating prefetching, optimal speculation stride scheduler, and asynchronous verification, RaLMSpec can automatically exploit the acceleration potential to the fullest. For naive iterative RaLM serving, extensive evaluations over three language models on four downstream QA datasets demonstrate that RaLMSpec can achieve a speed-up ratio of 1.75-2.39x, 1.04-1.39x, and 1.31-1.77x when the retriever is an exact dense retriever, approximate dense retriever, and sparse retriever respectively compared with the baseline. For KNN-LM serving, RaLMSpec can achieve a speed-up ratio up to 7.59x and 2.45x when the retriever is an exact dense retriever and approximate dense retriever, respectively, compared with the baseline.
Evaluating the Determinants of Mode Choice Using Statistical and Machine Learning Techniques in the Indian Megacity of Bengaluru
Authors: Tanmay Ghosh, Nithin Nagaraj
Date: 2024-01-25 00:00:00
Tasks: Decision Making, Discrete Choice Models, Feature Importance

The decision making involved behind the mode choice is critical for transportation planning. While statistical learning techniques like discrete choice models have been used traditionally, machine learning (ML) models have gained traction recently among the transportation planners due to their higher predictive performance. However, the black box nature of ML models pose significant interpretability challenges, limiting their practical application in decision and policy making. This study utilised a dataset of $1350$ households belonging to low and low-middle income bracket in the city of Bengaluru to investigate mode choice decision making behaviour using Multinomial logit model and ML classifiers like decision trees, random forests, extreme gradient boosting and support vector machines. In terms of accuracy, random forest model performed the best ($0.788$ on training data and $0.605$ on testing data) compared to all the other models. This research has adopted modern interpretability techniques like feature importance and individual conditional expectation plots to explain the decision making behaviour using ML models. A higher travel costs significantly reduce the predicted probability of bus usage compared to other modes (a $0.66\%$ and $0.34\%$ reduction using Random Forests and XGBoost model for $10\%$ increase in travel cost). However, reducing travel time by $10\%$ increases the preference for the metro ($0.16\%$ in Random Forests and 0.42% in XGBoost). This research augments the ongoing research on mode choice analysis using machine learning techniques, which would help in improving the understanding of the performance of these models with real-world data in terms of both accuracy and interpretability.
Stochastic Weakly Convex Optimization Beyond Lipschitz Continuity
Authors: Wenzhi Gao, Qi Deng
Date: 2024-01-25 00:00:00

This paper considers stochastic weakly convex optimization without the standard Lipschitz continuity assumption. Based on new adaptive regularization (stepsize) strategies, we show that a wide class of stochastic algorithms, including the stochastic subgradient method, preserve the $\mathcal{O} ( 1 / \sqrt{K})$ convergence rate with constant failure rate. Our analyses rest on rather weak assumptions: the Lipschitz parameter can be either bounded by a general growth function of $\|x\|$ or locally estimated through independent random samples.
Peer-to-Peer Energy Trading of Solar and Energy Storage: A Networked Multiagent Reinforcement Learning Approach
Authors: Chen Feng, Andrew L. Liu
Date: 2024-01-25 00:00:00
Tasks: energy trading, Management, Multi-agent Reinforcement Learning, reinforcement-learning, Reinforcement Learning

Utilizing distributed renewable and energy storage resources in local distribution networks via peer-to-peer (P2P) energy trading has long been touted as a solution to improve energy systems' resilience and sustainability. Consumers and prosumers (those who have energy generation resources), however, do not have the expertise to engage in repeated P2P trading, and the zero-marginal costs of renewables present challenges in determining fair market prices. To address these issues, we propose multi-agent reinforcement learning (MARL) frameworks to help automate consumers' bidding and management of their solar PV and energy storage resources, under a specific P2P clearing mechanism that utilizes the so-called supply-demand ratio. In addition, we show how the MARL frameworks can integrate physical network constraints to realize voltage control, hence ensuring physical feasibility of the P2P energy trading and paving way for real-world implementations.
HMM for Discovering Decision-Making Dynamics Using Reinforcement Learning Experiments
Authors: Xingche Guo, Donglin Zeng, Yuanjia Wang
Date: 2024-01-25 00:00:00
Tasks: Decision Making, parameter estimation, reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL)

Major depressive disorder (MDD) presents challenges in diagnosis and treatment due to its complex and heterogeneous nature. Emerging evidence indicates that reward processing abnormalities may serve as a behavioral marker for MDD. To measure reward processing, patients perform computer-based behavioral tasks that involve making choices or responding to stimulants that are associated with different outcomes. Reinforcement learning (RL) models are fitted to extract parameters that measure various aspects of reward processing to characterize how patients make decisions in behavioral tasks. Recent findings suggest the inadequacy of characterizing reward learning solely based on a single RL model; instead, there may be a switching of decision-making processes between multiple strategies. An important scientific question is how the dynamics of learning strategies in decision-making affect the reward learning ability of individuals with MDD. Motivated by the probabilistic reward task (PRT) within the EMBARC study, we propose a novel RL-HMM framework for analyzing reward-based decision-making. Our model accommodates learning strategy switching between two distinct approaches under a hidden Markov model (HMM): subjects making decisions based on the RL model or opting for random choices. We account for continuous RL state space and allow time-varying transition probabilities in the HMM. We introduce a computationally efficient EM algorithm for parameter estimation and employ a nonparametric bootstrap for inference. We apply our approach to the EMBARC study to show that MDD patients are less engaged in RL compared to the healthy controls, and engagement is associated with brain activities in the negative affect circuitry during an emotional conflict task.
Towards 3D Molecule-Text Interpretation in Language Models
Authors: Sihang Li, Zhiyuan Liu, Yanchen Luo, Xiang Wang, Xiangnan He, Kenji Kawaguchi, Tat-Seng Chua, Qi Tian
Date: 2024-01-25 00:00:00
Tasks: Instruction Following, Language Modeling, Language Modelling, Molecule Captioning, Retrieval, Text Retrieval

Language Models (LMs) have greatly influenced diverse domains. However, their inherent limitation in comprehending 3D molecular structures has considerably constrained their potential in the biomolecular domain. To bridge this gap, we focus on 3D molecule-text interpretation, and propose 3D-MoLM: 3D-Molecular Language Modeling. Specifically, 3D-MoLM enables an LM to interpret and analyze 3D molecules by equipping the LM with a 3D molecular encoder. This integration is achieved by a 3D molecule-text projector, bridging the 3D molecular encoder's representation space and the LM's input space. Moreover, to enhance 3D-MoLM's ability of cross-modal molecular understanding and instruction following, we meticulously curated a 3D molecule-centric instruction tuning dataset -- 3D-MoIT. Through 3D molecule-text alignment and 3D molecule-centric instruction tuning, 3D-MoLM establishes an integration of 3D molecular encoder and LM. It significantly surpasses existing baselines on downstream tasks, including molecule-text retrieval, molecule captioning, and more challenging open-text molecular QA tasks, especially focusing on 3D-dependent properties. We release our codes and datasets at https://github.com/lsh0520/3D-MoLM.
A Survey of Deep Learning and Foundation Models for Time Series Forecasting
Authors: John A. Miller, Mohammed Aldosari, Farah Saeed, Nasid Habib Barna, Subas Rana, I. Budak Arpinar, Ninghao Liu
Date: 2024-01-25 00:00:00
Tasks: Deep Learning, Knowledge Graphs, Time Series, Time Series Forecasting

Deep Learning has been successfully applied to many application domains, yet its advantages have been slow to emerge for time series forecasting. For example, in the well-known Makridakis (M) Competitions, hybrids of traditional statistical or machine learning techniques have only recently become the top performers. With the recent architectural advances in deep learning being applied to time series forecasting (e.g., encoder-decoders with attention, transformers, and graph neural networks), deep learning has begun to show significant advantages. Still, in the area of pandemic prediction, there remain challenges for deep learning models: the time series is not long enough for effective training, unawareness of accumulated scientific knowledge, and interpretability of the model. To this end, the development of foundation models (large deep learning models with extensive pre-training) allows models to understand patterns and acquire knowledge that can be applied to new related problems before extensive training data becomes available. Furthermore, there is a vast amount of knowledge available that deep learning models can tap into, including Knowledge Graphs and Large Language Models fine-tuned with scientific domain knowledge. There is ongoing research examining how to utilize or inject such knowledge into deep learning models. In this survey, several state-of-the-art modeling techniques are reviewed, and suggestions for further work are provided.
Cross-Modal Prototype based Multimodal Federated Learning under Severely Missing Modality
Authors: Huy Q. Le, Chu Myaet Thwal, Yu Qiao, Ye Lin Tun, Minh N. H. Nguyen, Choong Seon Hong
Date: 2024-01-25 00:00:00
Tasks: cross-modal alignment, Federated Learning

Multimodal federated learning (MFL) has emerged as a decentralized machine learning paradigm, allowing multiple clients with different modalities to collaborate on training a machine learning model across diverse data sources without sharing their private data. However, challenges, such as data heterogeneity and severely missing modalities, pose crucial hindrances to the robustness of MFL, significantly impacting the performance of global model. The absence of a modality introduces misalignment during the local training phase, stemming from zero-filling in the case of clients with missing modalities. Consequently, achieving robust generalization in global model becomes imperative, especially when dealing with clients that have incomplete data. In this paper, we propose Multimodal Federated Cross Prototype Learning (MFCPL), a novel approach for MFL under severely missing modalities by conducting the complete prototypes to provide diverse modality knowledge in modality-shared level with the cross-modal regularization and modality-specific level with cross-modal contrastive mechanism. Additionally, our approach introduces the cross-modal alignment to provide regularization for modality-specific features, thereby enhancing overall performance, particularly in scenarios involving severely missing modalities. Through extensive experiments on three multimodal datasets, we demonstrate the effectiveness of MFCPL in mitigating these challenges and improving the overall performance.
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification
Authors: Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul J. Butte
Date: 2024-01-25 00:00:00
Tasks: Transfer Learning, zero-shot-classification, Zero-Shot Learning

Although supervised machine learning is popular for information extraction from clinical notes, creating large annotated datasets requires extensive domain expertise and is time-consuming. Meanwhile, large language models (LLMs) have demonstrated promising transfer learning capability. In this study, we explored whether recent LLMs can reduce the need for large-scale data annotations. We curated a manually-labeled dataset of 769 breast cancer pathology reports, labeled with 13 categories, to compare zero-shot classification capability of the GPT-4 model and the GPT-3.5 model with supervised classification performance of three model architectures: random forests classifier, long short-term memory networks with attention (LSTM-Att), and the UCSF-BERT model. Across all 13 tasks, the GPT-4 model performed either significantly better than or as well as the best supervised model, the LSTM-Att model (average macro F1 score of 0.83 vs. 0.75). On tasks with high imbalance between labels, the differences were more prominent. Frequent sources of GPT-4 errors included inferences from multiple samples and complex task design. On complex tasks where large annotated datasets cannot be easily collected, LLMs can reduce the burden of large-scale data labeling. However, if the use of LLMs is prohibitive, the use of simpler supervised models with large annotated datasets can provide comparable results. LLMs demonstrated the potential to speed up the execution of clinical NLP studies by reducing the need for curating large annotated datasets. This may result in an increase in the utilization of NLP-based variables and outcomes in observational clinical studies.