pwc-archive/papers-with-abstracts huggingface dataset:
Absformer: Transformer-based Model for Unsupervised Multi-Document Abstractive Summarization
Authors: Mohamed Trabelsi, Huseyin Uzunalioglu
Date: 2023-06-07 00:00:00
Tasks: Abstractive Text Summarization, Decoder, Document Summarization, Language Modeling, Language Modelling, Masked Language Modeling, Multi-Document Summarization, Text Generation

Multi-document summarization (MDS) refers to the task of summarizing the text in multiple documents into a concise summary. The generated summary can save the time of reading many documents by providing the important content in the form of a few sentences. Abstractive MDS aims to generate a coherent and fluent summary for multiple documents using natural language generation techniques. In this paper, we consider the unsupervised abstractive MDS setting where there are only documents with no groundtruh summaries provided, and we propose Absformer, a new Transformer-based method for unsupervised abstractive summary generation. Our method consists of a first step where we pretrain a Transformer-based encoder using the masked language modeling (MLM) objective as the pretraining task in order to cluster the documents into semantically similar groups; and a second step where we train a Transformer-based decoder to generate abstractive summaries for the clusters of documents. To our knowledge, we are the first to successfully incorporate a Transformer-based model to solve the unsupervised abstractive MDS task. We evaluate our approach using three real-world datasets from different domains, and we demonstrate both substantial improvements in terms of evaluation metrics over state-of-the-art abstractive-based methods, and generalization to datasets from different domains.
Interpretable Deep Clustering for Tabular Data
Authors: Jonathan Svirsky, Ofir Lindenbaum
Date: 2023-06-07 00:00:00
Tasks: Clustering, Deep Clustering, feature selection

Clustering is a fundamental learning task widely used as a first step in data analysis. For example, biologists use cluster assignments to analyze genome sequences, medical records, or images. Since downstream analysis is typically performed at the cluster level, practitioners seek reliable and interpretable clustering models. We propose a new deep-learning framework for general domain tabular data that predicts interpretable cluster assignments at the instance and cluster levels. First, we present a self-supervised procedure to identify the subset of the most informative features from each data point. Then, we design a model that predicts cluster assignments and a gate matrix that provides cluster-level feature selection. Overall, our model provides cluster assignments with an indication of the driving feature for each sample and each cluster. We show that the proposed method can reliably predict cluster assignments in biological, text, image, and physics tabular datasets. Furthermore, using previously proposed metrics, we verify that our model leads to interpretable results at a sample and cluster level. Our code is available at https://github.com/jsvir/idc.
Learning to Navigate in Turbulent Flows with Aerial Robot Swarms: A Cooperative Deep Reinforcement Learning Approach
Authors: Diego Patiño, Siddharth Mayya, Juan Calderon, Kostas Daniilidis, David Saldaña
Date: 2023-06-07 00:00:00
Tasks: Deep Reinforcement Learning, Navigate

Aerial operation in turbulent environments is a challenging problem due to the chaotic behavior of the flow. This problem is made even more complex when a team of aerial robots is trying to achieve coordinated motion in turbulent wind conditions. In this paper, we present a novel multi-robot controller to navigate in turbulent flows, decoupling the trajectory-tracking control from the turbulence compensation via a nested control architecture. Unlike previous works, our method does not learn to compensate for the air-flow at a specific time and space. Instead, our method learns to compensate for the flow based on its effect on the team. This is made possible via a deep reinforcement learning approach, implemented via a Graph Convolutional Neural Network (GCNN)-based architecture, which enables robots to achieve better wind compensation by processing the spatial-temporal correlation of wind flows across the team. Our approach scales well to large robot teams -- as each robot only uses information from its nearest neighbors -- , and generalizes well to robot teams larger than seen in training. Simulated experiments demonstrate how information sharing improves turbulence compensation in a team of aerial robots and demonstrate the flexibility of our method over different team configurations.
How to Evaluate Behavioral Models
Authors: Greg d'Eon, Sophie Greenwood, Kevin Leyton-Brown, James R. Wright
Date: 2023-06-07 00:00:00

Researchers building behavioral models, such as behavioral game theorists, use experimental data to evaluate predictive models of human behavior. However, there is little agreement about which loss function should be used in evaluations, with error rate, negative log-likelihood, cross-entropy, Brier score, and squared L2 error all being common choices. We attempt to offer a principled answer to the question of which loss functions should be used for this task, formalizing axioms that we argue loss functions should satisfy. We construct a family of loss functions, which we dub "diagonal bounded Bregman divergences", that satisfy all of these axioms. These rule out many loss functions used in practice, but notably include squared L2 error; we thus recommend its use for evaluating behavioral models.
Invariant Causal Set Covering Machines
Authors: Thibaud Godon, Baptiste Bauvin, Pascal Germain, Jacques Corbeil, Alexandre Drouin
Date: 2023-06-07 00:00:00

Rule-based models, such as decision trees, appeal to practitioners due to their interpretable nature. However, the learning algorithms that produce such models are often vulnerable to spurious associations and thus, they are not guaranteed to extract causally-relevant insights. In this work, we build on ideas from the invariant causal prediction literature to propose Invariant Causal Set Covering Machines, an extension of the classical Set Covering Machine algorithm for conjunctions/disjunctions of binary-valued rules that provably avoids spurious associations. We demonstrate both theoretically and empirically that our method can identify the causal parents of a variable of interest in polynomial time.
Exploiting Observation Bias to Improve Matrix Completion
Authors: Yassir Jedra, Sean Mann, Charlotte Park, Devavrat Shah
Date: 2023-06-07 00:00:00
Tasks: Matrix Completion

We consider a variant of matrix completion where entries are revealed in a biased manner. We wish to understand the extent to which such bias can be exploited in improving predictions. Towards that, we propose a natural model where the observation pattern and outcome of interest are driven by the same set of underlying latent (or unobserved) factors. We devise Mask Nearest Neighbor (MNN), a novel two-stage matrix completion algorithm: first, it recovers (distances between) the latent factors by utilizing matrix estimation for the fully observed noisy binary matrix, corresponding to the observation pattern; second, it utilizes the recovered latent factors as features and sparsely observed noisy outcomes as labels to perform non-parametric supervised learning. Our analysis reveals that MNN enjoys entry-wise finite-sample error rates that are competitive with corresponding supervised learning parametric rates. Despite not having access to the latent factors and dealing with biased observations, MNN exhibits such competitive performance via only exploiting the shared information between the bias and outcomes. Finally, through empirical evaluation using a real-world dataset, we find that with MNN, the estimates have 28x smaller mean squared error compared to traditional matrix completion methods, suggesting the utility of the model and method proposed in this work.
A Linearly Convergent GAN Inversion-based Algorithm for Reverse Engineering of Deceptions
Authors: Darshan Thaker, Paris Giampouras, René Vidal
Date: 2023-06-07 00:00:00
Tasks: valid

An important aspect of developing reliable deep learning systems is devising strategies that make these systems robust to adversarial attacks. There is a long line of work that focuses on developing defenses against these attacks, but recently, researchers have began to study ways to reverse engineer the attack process. This allows us to not only defend against several attack models, but also classify the threat model. However, there is still a lack of theoretical guarantees for the reverse engineering process. Current approaches that give any guarantees are based on the assumption that the data lies in a union of linear subspaces, which is not a valid assumption for more complex datasets. In this paper, we build on prior work and propose a novel framework for reverse engineering of deceptions which supposes that the clean data lies in the range of a GAN. To classify the signal and attack, we jointly solve a GAN inversion problem and a block-sparse recovery problem. For the first time in the literature, we provide deterministic linear convergence guarantees for this problem. We also empirically demonstrate the merits of the proposed approach on several nonlinear datasets as compared to state-of-the-art methods.
Analysis, Identification and Prediction of Parkinson Disease Sub-Types and Progression through Machine Learning
Authors: Ashwin Ram
Date: 2023-06-07 00:00:00

This paper represents a groundbreaking advancement in Parkinson disease (PD) research by employing a novel machine learning framework to categorize PD into distinct subtypes and predict its progression. Utilizing a comprehensive dataset encompassing both clinical and neurological parameters, the research applies advanced supervised and unsupervised learning techniques. This innovative approach enables the identification of subtle, yet critical, patterns in PD manifestation, which traditional methodologies often miss. Significantly, this research offers a path toward personalized treatment strategies, marking a major stride in the precision medicine domain and showcasing the transformative potential of integrating machine learning into medical research.
Using Imperfect Surrogates for Downstream Inference: Design-based Supervised Learning for Social Science Applications of Large Language Models
Authors: Naoki Egami, Musashi Hinck, Brandon M. Stewart, Hanying Wei
Date: 2023-06-07 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Uncertainty Quantification, valid

In computational social science (CSS), researchers analyze documents to explain social and political phenomena. In most scenarios, CSS researchers first obtain labels for documents and then explain labels using interpretable regression analyses in the second step. One increasingly common way to annotate documents cheaply at scale is through large language models (LLMs). However, like other scalable ways of producing annotations, such surrogate labels are often imperfect and biased. We present a new algorithm for using imperfect annotation surrogates for downstream statistical analyses while guaranteeing statistical properties -- like asymptotic unbiasedness and proper uncertainty quantification -- which are fundamental to CSS research. We show that direct use of surrogate labels in downstream statistical analyses leads to substantial bias and invalid confidence intervals, even with high surrogate accuracy of 80-90%. To address this, we build on debiased machine learning to propose the design-based supervised learning (DSL) estimator. DSL employs a doubly-robust procedure to combine surrogate labels with a smaller number of high-quality, gold-standard labels. Our approach guarantees valid inference for downstream statistical analyses, even when surrogates are arbitrarily biased and without requiring stringent assumptions, by controlling the probability of sampling documents for gold-standard labeling. Both our theoretical analysis and experimental results show that DSL provides valid statistical inference while achieving root mean squared errors comparable to existing alternatives that focus only on prediction without inferential guarantees.
Automatic retrieval of corresponding US views in longitudinal examinations
Authors: Hamideh Kerdegari, Tran Huy Nhat Phung1, Van Hao Nguyen, Thi Phuong Thao Truong, Ngoc Minh Thu Le, Thanh Phuong Le, Thi Mai Thao Le, Luigi Pisani, Linda Denehy, VITAL Consortium, Reza Razavi, Louise Thwaites, Sophie Yacoub, Andrew P. King, Alberto Gomez
Date: 2023-06-07 00:00:00
Tasks: Contrastive Learning, Retrieval

Skeletal muscle atrophy is a common occurrence in critically ill patients in the intensive care unit (ICU) who spend long periods in bed. Muscle mass must be recovered through physiotherapy before patient discharge and ultrasound imaging is frequently used to assess the recovery process by measuring the muscle size over time. However, these manual measurements are subject to large variability, particularly since the scans are typically acquired on different days and potentially by different operators. In this paper, we propose a self-supervised contrastive learning approach to automatically retrieve similar ultrasound muscle views at different scan times. Three different models were compared using data from 67 patients acquired in the ICU. Results indicate that our contrastive model outperformed a supervised baseline model in the task of view retrieval with an AUC of 73.52% and when combined with an automatic segmentation model achieved 5.7%+/-0.24% error in cross-sectional area. Furthermore, a user study survey confirmed the efficacy of our model for muscle view retrieval.
Stochastic Natural Thresholding Algorithms
Authors: Rachel Grotheer, Shuang Li, Anna Ma, Deanna Needell, Jing Qin
Date: 2023-06-07 00:00:00
Tasks: Computational Efficiency

Sparse signal recovery is one of the most fundamental problems in various applications, including medical imaging and remote sensing. Many greedy algorithms based on the family of hard thresholding operators have been developed to solve the sparse signal recovery problem. More recently, Natural Thresholding (NT) has been proposed with improved computational efficiency. This paper proposes and discusses convergence guarantees for stochastic natural thresholding algorithms by extending the NT from the deterministic version with linear measurements to the stochastic version with a general objective function. We also conduct various numerical experiments on linear and nonlinear measurements to demonstrate the performance of StoNT.
Scalable Neural Symbolic Regression using Control Variables
Authors: Xieting Chu, Hongjue Zhao, Enze Xu, Hairong Qi, Minghan Chen, Huajie Shao
Date: 2023-06-07 00:00:00
Tasks: regression, Symbolic Regression

Symbolic regression (SR) is a powerful technique for discovering the analytical mathematical expression from data, finding various applications in natural sciences due to its good interpretability of results. However, existing methods face scalability issues when dealing with complex equations involving multiple variables. To address this challenge, we propose ScaleSR, a scalable symbolic regression model that leverages control variables to enhance both accuracy and scalability. The core idea is to decompose multi-variable symbolic regression into a set of single-variable SR problems, which are then combined in a bottom-up manner. The proposed method involves a four-step process. First, we learn a data generator from observed data using deep neural networks (DNNs). Second, the data generator is used to generate samples for a certain variable by controlling the input variables. Thirdly, single-variable symbolic regression is applied to estimate the corresponding mathematical expression. Lastly, we repeat steps 2 and 3 by gradually adding variables one by one until completion. We evaluate the performance of our method on multiple benchmark datasets. Experimental results demonstrate that the proposed ScaleSR significantly outperforms state-of-the-art baselines in discovering mathematical expressions with multiple variables. Moreover, it can substantially reduce the search space for symbolic regression. The source code will be made publicly available upon publication.
Differentiable Earth Mover's Distance for Data Compression at the High-Luminosity LHC
Authors: Rohan Shenoy, Javier Duarte, Christian Herwig, James Hirschauer, Daniel Noonan, Maurizio Pierini, Nhan Tran, Cristina Mantilla Suarez
Date: 2023-06-07 00:00:00
Tasks: Data Compression

The Earth mover's distance (EMD) is a useful metric for image recognition and classification, but its usual implementations are not differentiable or too slow to be used as a loss function for training other algorithms via gradient descent. In this paper, we train a convolutional neural network (CNN) to learn a differentiable, fast approximation of the EMD and demonstrate that it can be used as a substitute for computing-intensive EMD implementations. We apply this differentiable approximation in the training of an autoencoder-inspired neural network (encoder NN) for data compression at the high-luminosity LHC at CERN. The goal of this encoder NN is to compress the data while preserving the information related to the distribution of energy deposits in particle detectors. We demonstrate that the performance of our encoder NN trained using the differentiable EMD CNN surpasses that of training with loss functions based on mean squared error.
Multiscale Flow for Robust and Optimal Cosmological Analysis
Authors: Biwei Dai, Uros Seljak
Date: 2023-06-07 00:00:00
Tasks: Dimensionality Reduction

We propose Multiscale Flow, a generative Normalizing Flow that creates samples and models the field-level likelihood of two-dimensional cosmological data such as weak lensing. Multiscale Flow uses hierarchical decomposition of cosmological fields via a wavelet basis, and then models different wavelet components separately as Normalizing Flows. The log-likelihood of the original cosmological field can be recovered by summing over the log-likelihood of each wavelet term. This decomposition allows us to separate the information from different scales and identify distribution shifts in the data such as unknown scale-dependent systematics. The resulting likelihood analysis can not only identify these types of systematics, but can also be made optimal, in the sense that the Multiscale Flow can learn the full likelihood at the field without any dimensionality reduction. We apply Multiscale Flow to weak lensing mock datasets for cosmological inference, and show that it significantly outperforms traditional summary statistics such as power spectrum and peak counts, as well as novel Machine Learning based summary statistics such as scattering transform and convolutional neural networks. We further show that Multiscale Flow is able to identify distribution shifts not in the training data such as baryonic effects. Finally, we demonstrate that Multiscale Flow can be used to generate realistic samples of weak lensing data.
Neural Embeddings for Protein Graphs
Authors: Francesco Ceccarelli, Lorenzo Giusti, Sean B. Holden, Pietro Liò
Date: 2023-06-07 00:00:00

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches struggle to efficiently integrate the wealth of information contained in the protein sequence and structure. In this paper, we propose a novel framework for embedding protein graphs in geometric vector spaces, by learning an encoder function that preserves the structural distance between protein graphs. Utilizing Graph Neural Networks (GNNs) and Large Language Models (LLMs), the proposed framework generates structure- and sequence-aware protein representations. We demonstrate that our embeddings are successful in the task of comparing protein structures, while providing a significant speed-up compared to traditional approaches based on structural alignment. Our framework achieves remarkable results in the task of protein structure classification; in particular, when compared to other work, the proposed method shows an average F1-Score improvement of 26% on out-of-distribution (OOD) samples and of 32% when tested on samples coming from the same distribution as the training data. Our approach finds applications in areas such as drug prioritization, drug re-purposing, disease sub-type analysis and elsewhere.
U-PASS: an Uncertainty-guided deep learning Pipeline for Automated Sleep Staging
Authors: Elisabeth R. M. Heremans, Nabeel Seedat, Bertien Buyse, Dries Testelmans, Mihaela van der Schaar, Maarten De Vos
Date: 2023-06-07 00:00:00
Tasks: Sleep Staging

As machine learning becomes increasingly prevalent in critical fields such as healthcare, ensuring the safety and reliability of machine learning systems becomes paramount. A key component of reliability is the ability to estimate uncertainty, which enables the identification of areas of high and low confidence and helps to minimize the risk of error. In this study, we propose a machine learning pipeline called U-PASS tailored for clinical applications that incorporates uncertainty estimation at every stage of the process, including data acquisition, training, and model deployment. The training process is divided into a supervised pre-training step and a semi-supervised finetuning step. We apply our uncertainty-guided deep learning pipeline to the challenging problem of sleep staging and demonstrate that it systematically improves performance at every stage. By optimizing the training dataset, actively seeking informative samples, and deferring the most uncertain samples to an expert, we achieve an expert-level accuracy of 85% on a challenging clinical dataset of elderly sleep apnea patients, representing a significant improvement over the baseline accuracy of 75%. U-PASS represents a promising approach to incorporating uncertainty estimation into machine learning pipelines, thereby improving their reliability and unlocking their potential in clinical settings.
Deep Learning with Partially Labeled Data for Radio Map Reconstruction
Authors: Alkesandra Malkova, Massih-Reza Amini, Benoit Denis, Christophe Villien
Date: 2023-06-07 00:00:00
Tasks: Deep Learning, Neural Architecture Search, Position

In this paper, we address the problem of Received Signal Strength map reconstruction based on location-dependent radio measurements and utilizing side knowledge about the local region; for example, city plan, terrain height, gateway position. Depending on the quantity of such prior side information, we employ Neural Architecture Search to find an optimized Neural Network model with the best architecture for each of the supposed settings. We demonstrate that using additional side information enhances the final accuracy of the Received Signal Strength map reconstruction on three datasets that correspond to three major cities, particularly in sub-areas near the gateways where larger variations of the average received signal power are typically observed.