pwc-archive/papers-with-abstracts huggingface dataset:
Multi-step prediction of chlorophyll concentration based on Adaptive Graph-Temporal Convolutional Network with Series Decomposition
Authors: Ying Chen, Xiao Li, Hongbo Zhang, Wenyang Song, Chongxuan Xv
Date: 2023-09-13 00:00:00
Tasks: Decision Making, Prediction

Chlorophyll concentration can well reflect the nutritional status and algal blooms of water bodies, and is an important indicator for evaluating water quality. The prediction of chlorophyll concentration change trend is of great significance to environmental protection and aquaculture. However, there is a complex and indistinguishable nonlinear relationship between many factors affecting chlorophyll concentration. In order to effectively mine the nonlinear features contained in the data. This paper proposes a time-series decomposition adaptive graph-time convolutional network ( AGTCNSD ) prediction model. Firstly, the original sequence is decomposed into trend component and periodic component by moving average method. Secondly, based on the graph convolutional neural network, the water quality parameter data is modeled, and a parameter embedding matrix is defined. The idea of matrix decomposition is used to assign weight parameters to each node. The adaptive graph convolution learns the relationship between different water quality parameters, updates the state information of each parameter, and improves the learning ability of the update relationship between nodes. Finally, time dependence is captured by time convolution to achieve multi-step prediction of chlorophyll concentration. The validity of the model is verified by the water quality data of the coastal city Beihai. The results show that the prediction effect of this method is better than other methods. It can be used as a scientific resource for environmental management decision-making.
Respiratory Disease Classification and Biometric Analysis Using Biosignals from Digital Stethoscopes
Authors: Constantino Álvarez Casado, Manuel Lage Cañellas, Matteo Pedone, Xiaoting Wu, Le Nguyen, Miguel Bordallo López
Date: 2023-09-12 00:00:00
Tasks: Binary Classification, Classification, Diagnostic, Gender Classification, Multi-class Classification

Respiratory diseases remain a leading cause of mortality worldwide, highlighting the need for faster and more accurate diagnostic tools. This work presents a novel approach leveraging digital stethoscope technology for automatic respiratory disease classification and biometric analysis. Our approach has the potential to significantly enhance traditional auscultation practices. By leveraging one of the largest publicly available medical database of respiratory sounds, we train machine learning models to classify various respiratory health conditions. Our method differs from conventional methods by using Empirical Mode Decomposition (EMD) and spectral analysis techniques to isolate clinically relevant biosignals embedded within acoustic data captured by digital stethoscopes. This approach focuses on information closely tied to cardiovascular and respiratory patterns within the acoustic data. Spectral analysis and filtering techniques isolate Intrinsic Mode Functions (IMFs) strongly correlated with these physiological phenomena. These biosignals undergo a comprehensive feature extraction process for predictive modeling. These features then serve as input to train several machine learning models for both classification and regression tasks. Our approach achieves high accuracy in both binary classification (89% balanced accuracy for healthy vs. diseased) and multi-class classification (72% balanced accuracy for specific diseases like pneumonia and COPD). For the first time, this work introduces regression models capable of estimating age and body mass index (BMI) based solely on acoustic data, as well as a model for sex classification. Our findings underscore the potential of intelligent digital stethoscopes to significantly enhance assistive and remote diagnostic capabilities, contributing to advancements in digital health, telehealth, and remote patient monitoring.
Sleep Stage Classification Using a Pre-trained Deep Learning Model
Authors: Hassan Ardeshir, Mohammad Araghi
Date: 2023-09-12 00:00:00
Tasks: Deep Learning, EEG, Electroencephalogram (EEG)

One of the common human diseases is sleep disorders. The classification of sleep stages plays a fundamental role in diagnosing sleep disorders, monitoring treatment effectiveness, and understanding the relationship between sleep stages and various health conditions. A precise and efficient classification of these stages can significantly enhance our understanding of sleep-related phenomena and ultimately lead to improved health outcomes and disease treatment. Models others propose are often time-consuming and lack sufficient accuracy, especially in stage N1. The main objective of this research is to present a machine-learning model called "EEGMobile". This model utilizes pre-trained models and learns from electroencephalogram (EEG) spectrograms of brain signals. The model achieved an accuracy of 86.97% on a publicly available dataset named "Sleep-EDF20", outperforming other models proposed by different researchers. Moreover, it recorded an accuracy of 56.4% in stage N1, which is better than other models. These findings demonstrate that this model has the potential to achieve better results for the treatment of this disease.
The Grand Illusion: The Myth of Software Portability and Implications for ML Progress
Authors: Fraser Mince, Dzung Dinh, Jonas Kgomo, Neil Thompson, Sara Hooker
Date: 2023-09-12 00:00:00
Tasks: Friction

Pushing the boundaries of machine learning often requires exploring different hardware and software combinations. However, the freedom to experiment across different tooling stacks can be at odds with the drive for efficiency, which has produced increasingly specialized AI hardware and incentivized consolidation around a narrow set of ML frameworks. Exploratory research can be restricted if software and hardware are co-evolving, making it even harder to stray away from mainstream ideas that work well with popular tooling stacks. While this friction increasingly impacts the rate of innovation in machine learning, to our knowledge the lack of portability in tooling has not been quantified. In this work, we ask: How portable are popular ML software frameworks? We conduct a large-scale study of the portability of mainstream ML frameworks across different hardware types. Our findings paint an uncomfortable picture -- frameworks can lose more than 40% of their key functions when ported to other hardware. Worse, even when functions are portable, the slowdown in their performance can be extreme and render performance untenable. Collectively, our results reveal how costly straying from a narrow set of hardware-software combinations can be - and suggest that specialization of hardware impedes innovation in machine learning research.
Optimal and Fair Encouragement Policy Evaluation and Learning
Authors: Angela Zhou
Date: 2023-09-12 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Causal Identification, Fairness

In consequential domains, it is often impossible to compel individuals to take treatment, so that optimal policy rules are merely suggestions in the presence of human non-adherence to treatment recommendations. Under heterogeneity, covariates may predict take-up of treatment and final outcome, but differently. While optimal treatment rules optimize causal outcomes across the population, access parity constraints or other fairness considerations on who receives treatment can be important. For example, in social services, a persistent puzzle is the gap in take-up of beneficial services among those who may benefit from them the most. We study causal identification and robust estimation of optimal treatment rules, including under potential violations of positivity. We consider fairness constraints such as demographic parity in treatment take-up, and other constraints, via constrained optimization. Our framework can be extended to handle algorithmic recommendations under an often-reasonable covariate-conditional exclusion restriction, using our robustness checks for lack of positivity in the recommendation. We develop a two-stage algorithm for solving over parametrized policy classes under general constraints to obtain variance-sensitive regret bounds. We illustrate the methods in three case studies based on data from reminders of SNAP benefits recertification, randomized encouragement to enroll in insurance, and from pretrial supervised release with electronic monitoring. While the specific remedy to inequities in algorithmic allocation is context-specific, it requires studying both take-up of decisions and downstream outcomes of them.
MELAGE: A purely python based Neuroimaging software (Neonatal)
Authors: Bahram Jafrasteh, Simón Pedro Lubián López, Isabel Benavente Fernández
Date: 2023-09-12 00:00:00
Tasks: Deep Learning, Image Segmentation, Semantic Segmentation

MELAGE, a pioneering Python-based neuroimaging software, emerges as a versatile tool for the visualization, processing, and analysis of medical images. Initially conceived to address the unique challenges of processing 3D ultrasound and MRI brain images during the neonatal period, MELAGE exhibits remarkable adaptability, extending its utility to the domain of adult human brain imaging. At its core, MELAGE features a semi-automatic brain extraction tool empowered by a deep learning module, ensuring precise and efficient brain structure extraction from MRI and 3D Ultrasound data. Moreover, MELAGE offers a comprehensive suite of features, encompassing dynamic 3D visualization, accurate measurements, and interactive image segmentation. This transformative software holds immense promise for researchers and clinicians, offering streamlined image analysis, seamless integration with deep learning algorithms, and broad applicability in the realm of medical imaging.
Using Unsupervised and Supervised Learning and Digital Twin for Deep Convective Ice Storm Classification
Authors: Jason Swope, Steve Chien, Emily Dunkel, Xavier Bosch-Lluis, Qing Yue, William Deal
Date: 2023-09-12 00:00:00

Smart Ice Cloud Sensing (SMICES) is a small-sat concept in which a primary radar intelligently targets ice storms based on information collected by a lookahead radiometer. Critical to the intelligent targeting is accurate identification of storm/cloud types from eight bands of radiance collected by the radiometer. The cloud types of interest are: clear sky, thin cirrus, cirrus, rainy anvil, and convection core. We describe multi-step use of Machine Learning and Digital Twin of the Earth's atmosphere to derive such a classifier. First, a digital twin of Earth's atmosphere called a Weather Research Forecast (WRF) is used generate simulated lookahead radiometer data as well as deeper "science" hidden variables. The datasets simulate a tropical region over the Caribbean and a non-tropical region over the Atlantic coast of the United States. A K-means clustering over the scientific hidden variables was utilized by human experts to generate an automatic labelling of the data - mapping each physical data point to cloud types by scientists informed by mean/centroids of hidden variables of the clusters. Next, classifiers were trained with the inputs of the simulated radiometer data and its corresponding label. The classifiers of a random decision forest (RDF), support vector machine (SVM), Gaussian na\"ive bayes, feed forward artificial neural network (ANN), and a convolutional neural network (CNN) were trained. Over the tropical dataset, the best performing classifier was able to identify non-storm and storm clouds with over 80% accuracy in each class for a held-out test set. Over the non-tropical dataset, the best performing classifier was able to classify non-storm clouds with over 90% accuracy and storm clouds with over 40% accuracy. Additionally both sets of classifiers were shown to be resilient to instrument noise.
Overview of Human Activity Recognition Using Sensor Data
Authors: Rebeen Ali Hamad, Wai Lok Woo, Bo Wei, Longzhi Yang
Date: 2023-09-12 00:00:00
Tasks: Activity Recognition, Deep Learning, Human Activity Recognition

Human activity recognition (HAR) is an essential research field that has been used in different applications including home and workplace automation, security and surveillance as well as healthcare. Starting from conventional machine learning methods to the recently developing deep learning techniques and the Internet of things, significant contributions have been shown in the HAR area in the last decade. Even though several review and survey studies have been published, there is a lack of sensor-based HAR overview studies focusing on summarising the usage of wearable sensors and smart home sensors data as well as applications of HAR and deep learning techniques. Hence, we overview sensor-based HAR, discuss several important applications that rely on HAR, and highlight the most common machine learning methods that have been used for HAR. Finally, several challenges of HAR are explored that should be addressed to further improve the robustness of HAR.
Spectral Convergence of Complexon Shift Operators
Authors: Purui Zhang, Xingchao Jian, Feng Ji, Wee Peng Tay, Bihan Wen
Date: 2023-09-12 00:00:00

Topological Signal Processing (TSP) utilizes simplicial complexes to model structures with higher order than vertices and edges. In this paper, we study the transferability of TSP via a generalized higher-order version of graphon, known as complexon. We recall the notion of a complexon as the limit of a simplicial complex sequence [1]. Inspired by the graphon shift operator and message-passing neural network, we construct a marginal complexon and complexon shift operator (CSO) according to components of all possible dimensions from the complexon. We investigate the CSO's eigenvalues and eigenvectors and relate them to a new family of weighted adjacency matrices. We prove that when a simplicial complex signal sequence converges to a complexon signal, the eigenvalues, eigenspaces, and Fourier transform of the corresponding CSOs converge to that of the limit complexon signal. This conclusion is further verified by two numerical experiments. These results hint at learning transferability on large simplicial complexes or simplicial complex sequences, which generalize the graphon signal processing framework.
Systematic Review of Experimental Paradigms and Deep Neural Networks for Electroencephalography-Based Cognitive Workload Detection
Authors: Vishnu KN, Cota Navin Gupta
Date: 2023-09-11 00:00:00
Tasks: EEG

This article summarizes a systematic review of the electroencephalography (EEG)-based cognitive workload (CWL) estimation. The focus of the article is twofold: identify the disparate experimental paradigms used for reliably eliciting discreet and quantifiable levels of cognitive load and the specific nature and representational structure of the commonly used input formulations in deep neural networks (DNNs) used for signal classification. The analysis revealed a number of studies using EEG signals in its native representation of a two-dimensional matrix for offline classification of CWL. However, only a few studies adopted an online or pseudo-online classification strategy for real-time CWL estimation. Further, only a couple of interpretable DNNs and a single generative model were employed for cognitive load detection till date during this review. More often than not, researchers were using DNNs as black-box type models. In conclusion, DNNs prove to be valuable tools for classifying EEG signals, primarily due to the substantial modeling power provided by the depth of their network architecture. It is further suggested that interpretable and explainable DNN models must be employed for cognitive workload estimation since existing methods are limited in the face of the non-stationary nature of the signal.
Ambiguity-Aware In-Context Learning with Large Language Models
Authors: Lingyu Gao, Aditi Chaudhary, Krishna Srinivasan, Kazuma Hashimoto, Karthik Raman, Michael Bendersky
Date: 2023-09-14 00:00:00
Tasks: In-Context Learning, Semantic Similarity, Semantic Textual Similarity, text-classification, Text Classification

In-context learning (ICL) i.e. showing LLMs only a few task-specific demonstrations has led to downstream gains with no task-specific fine-tuning required. However, LLMs are sensitive to the choice of prompts, and therefore a crucial research question is how to select good demonstrations for ICL. One effective strategy is leveraging semantic similarity between the ICL demonstrations and test inputs by using a text retriever, which however is sub-optimal as that does not consider the LLM's existing knowledge about that task. From prior work (Lyu et al., 2023), we already know that labels paired with the demonstrations bias the model predictions. This leads us to our hypothesis whether considering LLM's existing knowledge about the task, especially with respect to the output label space can help in a better demonstration selection strategy. Through extensive experimentation on three text classification tasks, we find that it is beneficial to not only choose semantically similar ICL demonstrations but also to choose those demonstrations that help resolve the inherent label ambiguity surrounding the test example. Interestingly, we find that including demonstrations that the LLM previously mis-classified and also fall on the test example's decision boundary, brings the most performance gain.
Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for Histopathology Images
Authors: Zhiyun Song, Penghui Du, Junpeng Yan, Kailu Li, Jianzhong Shou, Maode Lai, Yubo Fan, Yan Xu
Date: 2023-09-14 00:00:00
Tasks: Diversity, Image-to-Image Translation, Instance Segmentation, Multiple Instance Learning, Semantic Segmentation, Transfer Learning

Self-supervised pretraining attempts to enhance model performance by obtaining effective features from unlabeled data, and has demonstrated its effectiveness in the field of histopathology images. Despite its success, few works concentrate on the extraction of nucleus-level information, which is essential for pathologic analysis. In this work, we propose a novel nucleus-aware self-supervised pretraining framework for histopathology images. The framework aims to capture the nuclear morphology and distribution information through unpaired image-to-image translation between histopathology images and pseudo mask images. The generation process is modulated by both conditional and stochastic style representations, ensuring the reality and diversity of the generated histopathology images for pretraining. Further, an instance segmentation guided strategy is employed to capture instance-level information. The experiments on 7 datasets show that the proposed pretraining method outperforms supervised ones on Kather classification, multiple instance learning, and 5 dense-prediction tasks with the transfer learning protocol, and yields superior results than other self-supervised approaches on 8 semi-supervised tasks. Our project is publicly available at https://github.com/zhiyuns/UNITPathSSL.
Safety-Tuned LLaMAs: Lessons From Improving the Safety of Large Language Models that Follow Instructions
Authors: Federico Bianchi, Mirac Suzgun, Giuseppe Attanasio, Paul Röttger, Dan Jurafsky, Tatsunori Hashimoto, James Zou
Date: 2023-09-14 00:00:00

Training large language models to follow instructions makes them perform better on a wide range of tasks and generally become more helpful. However, a perfectly helpful model will follow even the most malicious instructions and readily generate harmful content. In this paper, we raise concerns over the safety of models that only emphasize helpfulness, not harmlessness, in their instruction-tuning. We show that several popular instruction-tuned models are highly unsafe. Moreover, we show that adding just 3% safety examples (a few hundred demonstrations) when fine-tuning a model like LLaMA can substantially improve its safety. Our safety-tuning does not make models significantly less capable or helpful as measured by standard benchmarks. However, we do find exaggerated safety behaviours, where too much safety-tuning makes models refuse perfectly safe prompts if they superficially resemble unsafe ones. As a whole, our results illustrate trade-offs in training LLMs to be helpful and training them to be safe.
Agents: An Open-source Framework for Autonomous Language Agents
Authors: Wangchunshu Zhou, Yuchen Eleanor Jiang, Long Li, Jialong Wu, Tiannan Wang, Shi Qiu, Jintian Zhang, Jing Chen, Ruipu Wu, Shuai Wang, Shiding Zhu, Jiyu Chen, Wentao Zhang, Xiangru Tang, Ningyu Zhang, Huajun Chen, Peng Cui, Mrinmaya Sachan
Date: 2023-09-14 00:00:00

Recent advances on large language models (LLMs) enable researchers and developers to build autonomous language agents that can automatically solve various tasks and interact with environments, humans, and other agents using natural language interfaces. We consider language agents as a promising direction towards artificial general intelligence and release Agents, an open-source library with the goal of opening up these advances to a wider non-specialist audience. Agents is carefully engineered to support important features including planning, memory, tool usage, multi-agent communication, and fine-grained symbolic control. Agents is user-friendly as it enables non-specialists to build, customize, test, tune, and deploy state-of-the-art autonomous language agents without much coding. The library is also research-friendly as its modularized design makes it easily extensible for researchers. Agents is available at https://github.com/aiwaves-cn/agents.
CATfOOD: Counterfactual Augmented Training for Improving Out-of-Domain Performance and Calibration
Authors: Rachneet Sachdeva, Martin Tutek, Iryna Gurevych
Date: 2023-09-14 00:00:00
Tasks: counterfactual, Data Augmentation, Diversity, Extractive Question-Answering, Question Answering

In recent years, large language models (LLMs) have shown remarkable capabilities at scale, particularly at generating text conditioned on a prompt. In our work, we investigate the use of LLMs to augment training data of small language models~(SLMs) with automatically generated counterfactual~(CF) instances -- i.e. minimally altered inputs -- in order to improve out-of-domain~(OOD) performance of SLMs in the extractive question answering~(QA) setup. We show that, across various LLM generators, such data augmentation consistently enhances OOD performance and improves model calibration for both confidence-based and rationale-augmented calibrator models. Furthermore, these performance improvements correlate with higher diversity of CF instances in terms of their surface form and semantic content. Finally, we show that CF augmented models which are easier to calibrate also exhibit much lower entropy when assigning importance, indicating that rationale-augmented calibrators prefer concise explanations.