pwc-archive/papers-with-abstracts huggingface dataset:
Towards Context-Aware Neural Performance-Score Synchronisation
Authors: Ruchit Agrawal
Date: 2022-05-31 00:00:00
Tasks: Feature Engineering, Form, Metric Learning, Navigate

Music can be represented in multiple forms, such as in the audio form as a recording of a performance, in the symbolic form as a computer readable score, or in the image form as a scan of the sheet music. Music synchronisation provides a way to navigate among multiple representations of music in a unified manner by generating an accurate mapping between them, lending itself applicable to a myriad of domains like music education, performance analysis, automatic accompaniment and music editing. Traditional synchronisation methods compute alignment using knowledge-driven and stochastic approaches, typically employing handcrafted features. These methods are often unable to generalise well to different instruments, acoustic environments and recording conditions, and normally assume complete structural agreement between the performances and the scores. This PhD furthers the development of performance-score synchronisation research by proposing data-driven, context-aware alignment approaches, on three fronts: Firstly, I replace the handcrafted features by employing a metric learning based approach that is adaptable to different acoustic settings and performs well in data-scarce conditions. Secondly, I address the handling of structural differences between the performances and scores, which is a common limitation of standard alignment methods. Finally, I eschew the reliance on both feature engineering and dynamic programming, and propose a completely data-driven synchronisation method that computes alignments using a neural framework, whilst also being robust to structural differences between the performances and scores.
A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations
Authors: Bangwei Guo, Xingyu Li, Miaomiao Yang, Hong Zhang, Xu Steven Xu
Date: 2022-05-31 00:00:00
Tasks: Deep Attention, Multiple Instance Learning

Deep-learning models based on whole-slide digital pathology images (WSIs) become increasingly popular for predicting molecular biomarkers. Instance-based models has been the mainstream strategy for predicting genetic alterations using WSIs although bag-based models along with self-attention mechanism-based algorithms have been proposed for other digital pathology applications. In this paper, we proposed a novel Attention-based Multiple Instance Mutation Learning (AMIML) model for predicting gene mutations. AMIML was comprised of successive 1-D convolutional layers, a decoder, and a residual weight connection to facilitate further integration of a lightweight attention mechanism to detect the most predictive image patches. Using data for 24 clinically relevant genes from four cancer cohorts in The Cancer Genome Atlas (TCGA) studies (UCEC, BRCA, GBM and KIRC), we compared AMIML with one popular instance-based model and four recently published bag-based models (e.g., CHOWDER, HE2RNA, etc.). AMIML demonstrated excellent robustness, not only outperforming all the five baseline algorithms in the vast majority of the tested genes (17 out of 24), but also providing near-best-performance for the other seven genes. Conversely, the performance of the baseline published algorithms varied across different cancers/genes. In addition, compared to the published models for genetic alterations, AMIML provided a significant improvement for predicting a wide range of genes (e.g., KMT2C, TP53, and SETD2 for KIRC; ERBB2, BRCA1, and BRCA2 for BRCA; JAK1, POLE, and MTOR for UCEC) as well as produced outstanding predictive models for other clinically relevant gene mutations, which have not been reported in the current literature. Furthermore, with the flexible and interpretable attention-based MIL pooling mechanism, AMIML could further zero-in and detect predictive image patches.
A Cross-City Federated Transfer Learning Framework: A Case Study on Urban Region Profiling
Authors: Gaode Chen, Yijun Su, Xinghua Zhang, Anmin Hu, Guochun Chen, Siyuan Feng, Ji Xiang, Junbo Zhang, Yu Zheng
Date: 2022-05-31 00:00:00
Tasks: Transfer Learning

Data insufficiency problems (i.e., data missing and label scarcity) caused by inadequate services and infrastructures or imbalanced development levels of cities have seriously affected the urban computing tasks in real scenarios. Prior transfer learning methods inspire an elegant solution to the data insufficiency, but are only concerned with one kind of insufficiency issue and fail to give consideration to both sides. In addition, most previous cross-city transfer methods overlook inter-city data privacy which is a public concern in practical applications. To address the above challenging problems, we propose a novel Cross-city Federated Transfer Learning framework (CcFTL) to cope with the data insufficiency and privacy problems. Concretely, CcFTL transfers the relational knowledge from multiple rich-data source cities to the target city. Besides, the model parameters specific to the target task are firstly trained on the source data and then fine-tuned to the target city by parameter transfer. With our adaptation of federated training and homomorphic encryption settings, CcFTL can effectively deal with the data privacy problem among cities. We take the urban region profiling as an application of smart cities and evaluate the proposed method with a real-world study. The experiments demonstrate the notable superiority of our framework over several competitive state-of-the-art methods.
COIN: Co-Cluster Infomax for Bipartite Graphs
Authors: Baoyu Jing, Yuchen Yan, Yada Zhu, Hanghang Tong
Date: 2022-05-31 00:00:00
Tasks: Drug Discovery, Information Retrieval, Recommendation Systems, Retrieval, Self-Supervised Learning

Bipartite graphs are powerful data structures to model interactions between two types of nodes, which have been used in a variety of applications, such as recommender systems, information retrieval, and drug discovery. A fundamental challenge for bipartite graphs is how to learn informative node embeddings. Despite the success of recent self-supervised learning methods on bipartite graphs, their objectives are discriminating instance-wise positive and negative node pairs, which could contain cluster-level errors. In this paper, we introduce a novel co-cluster infomax (COIN) framework, which captures the cluster-level information by maximizing the mutual information of co-clusters. Different from previous infomax methods which estimate mutual information by neural networks, COIN could easily calculate mutual information. Besides, COIN is an end-to-end coclustering method which can be trained jointly with other objective functions and optimized via back-propagation. Furthermore, we also provide theoretical analysis for COIN. We theoretically prove that COIN is able to effectively increase the mutual information of node embeddings and COIN is upper-bounded by the prior distributions of nodes. We extensively evaluate the proposed COIN framework on various benchmark datasets and tasks to demonstrate the effectiveness of COIN.
MonoSDF: Exploring Monocular Geometric Cues for Neural Implicit Surface Reconstruction
Authors: Zehao Yu, Songyou Peng, Michael Niemeyer, Torsten Sattler, Andreas Geiger
Date: 2022-06-01 00:00:00
Tasks: 3D Reconstruction, Multi-View 3D Reconstruction, Surface Reconstruction

In recent years, neural implicit surface reconstruction methods have become popular for multi-view 3D reconstruction. In contrast to traditional multi-view stereo methods, these approaches tend to produce smoother and more complete reconstructions due to the inductive smoothness bias of neural networks. State-of-the-art neural implicit methods allow for high-quality reconstructions of simple scenes from many input views. Yet, their performance drops significantly for larger and more complex scenes and scenes captured from sparse viewpoints. This is caused primarily by the inherent ambiguity in the RGB reconstruction loss that does not provide enough constraints, in particular in less-observed and textureless areas. Motivated by recent advances in the area of monocular geometry prediction, we systematically explore the utility these cues provide for improving neural implicit surface reconstruction. We demonstrate that depth and normal cues, predicted by general-purpose monocular estimators, significantly improve reconstruction quality and optimization time. Further, we analyse and investigate multiple design choices for representing neural implicit surfaces, ranging from monolithic MLP models over single-grid to multi-resolution grid representations. We observe that geometric monocular priors improve performance both for small-scale single-object as well as large-scale multi-object scenes, independent of the choice of representation.
Unifying Voxel-based Representation with Transformer for 3D Object Detection
Authors: Yanwei Li, Yilun Chen, Xiaojuan Qi, Zeming Li, Jian Sun, Jiaya Jia
Date: 2022-06-01 00:00:00
Tasks: 3D Object Detection, Decoder, Object, object-detection, Object Detection, Object Tracking, Transfer Learning

In this work, we present a unified framework for multi-modality 3D object detection, named UVTR. The proposed method aims to unify multi-modality representations in the voxel space for accurate and robust single- or cross-modality 3D detection. To this end, the modality-specific space is first designed to represent different inputs in the voxel feature space. Different from previous work, our approach preserves the voxel space without height compression to alleviate semantic ambiguity and enable spatial connections. To make full use of the inputs from different sensors, the cross-modality interaction is then proposed, including knowledge transfer and modality fusion. In this way, geometry-aware expressions in point clouds and context-rich features in images are well utilized for better performance and robustness. The transformer decoder is applied to efficiently sample features from the unified space with learnable positions, which facilitates object-level interactions. In general, UVTR presents an early attempt to represent different modalities in a unified framework. It surpasses previous work in single- or multi-modality entries. The proposed method achieves leading performance in the nuScenes test set for both object detection and the following object tracking task. Code is made publicly available at https://github.com/dvlab-research/UVTR.
CLIP4IDC: CLIP for Image Difference Captioning
Authors: Zixin Guo, Tzu-Jui Julius Wang, Jorma Laaksonen
Date: 2022-06-01 00:00:00
Tasks: Domain Adaptation, Image Classification

Image Difference Captioning (IDC) aims at generating sentences to describe differences between two similar-looking images. Conventional approaches learn an IDC model with a pre-trained and usually frozen visual feature extractor. Accordingly, two major issues may arise: (1) a large domain gap usually exists between the pre-training datasets used for training such a visual encoder and that of the downstream IDC task, and (2) the visual feature extractor, when separately encoding two images, often does not effectively encode the visual changes between two images. Due to the excellent zero-shot performance of the recently proposed CLIP, we thus propose CLIP4IDC to transfer a CLIP model for the IDC task to address those issues. Different from directly fine-tuning CLIP to generate sentences, we introduce an adaptation training process to adapt CLIP's visual encoder to capture and align differences in image pairs based on the textual descriptions. Experiments on three IDC benchmark datasets, CLEVR-Change, Spot-the-Diff, and Image-Editing-Request, demonstrate the effectiveness of CLIP4IDC.
Dual-stream spatiotemporal networks with feature sharing for monitoring animals in the home cage
Authors: Ezechukwu I. Nwokedi, Rasneer S. Bains, Luc Bidaut, Xujiong Ye, Sara Wells, James M. Brown
Date: 2022-06-01 00:00:00
Tasks: Anomaly Detection, Unsupervised Anomaly Detection

This paper presents a spatiotemporal deep learning approach for mouse behavioural classification in the home-cage. Using a series of dual-stream architectures with assorted modifications to increase performance, we introduce a novel feature sharing approach that jointly processes the streams at regular intervals throughout the network. To investigate the efficacy of this approach, models were evaluated by dissociating the streams and training/testing in the same rigorous manner as the main classifiers. Using an annotated, publicly available dataset of a singly-housed mice, we achieve prediction accuracy of 86.47% using an ensemble of a Inception-based network and an attention-based network, both of which utilize this feature sharing. We also demonstrate through ablation studies that for all models, the feature-sharing architectures consistently perform better than conventional ones having separate streams. The best performing models were further evaluated on other activity datasets, both mouse and human. Future work will investigate the effectiveness of feature sharing to behavioural classification in the unsupervised anomaly detection domain.
On the Choice of Data for Efficient Training and Validation of End-to-End Driving Models
Authors: Marvin Klingner, Konstantin Müller, Mona Mirzaie, Jasmin Breitenstein, Jan-Aike Termöhlen, Tim Fingscheidt
Date: 2022-06-01 00:00:00

The emergence of data-driven machine learning (ML) has facilitated significant progress in many complicated tasks such as highly-automated driving. While much effort is put into improving the ML models and learning algorithms in such applications, little focus is put into how the training data and/or validation setting should be designed. In this paper we investigate the influence of several data design choices regarding training and validation of deep driving models trainable in an end-to-end fashion. Specifically, (i) we investigate how the amount of training data influences the final driving performance, and which performance limitations are induced through currently used mechanisms to generate training data. (ii) Further, we show by correlation analysis, which validation design enables the driving performance measured during validation to generalize well to unknown test environments. (iii) Finally, we investigate the effect of random seeding and non-determinism, giving insights which reported improvements can be deemed significant. Our evaluations using the popular CARLA simulator provide recommendations regarding data generation and driving route selection for an efficient future development of end-to-end driving models.
Topological Deep Learning: Going Beyond Graph Data
Authors: Mustafa Hajij, Ghada Zamzmi, Theodore Papamarkou, Nina Miolane, Aldo Guzmán-Sáenz, Karthikeyan Natesan Ramamurthy, Tolga Birdal, Tamal K. Dey, Soham Mukherjee, Shreyas N. Samaga, Neal Livesay, Robin Walters, Paul Rosen, Michael T. Schaub
Date: 2022-06-01 00:00:00
Tasks: Deep Learning, Graph Learning

Topological deep learning is a rapidly growing field that pertains to the development of deep learning models for data supported on topological domains such as simplicial complexes, cell complexes, and hypergraphs, which generalize many domains encountered in scientific computations. In this paper, we present a unifying deep learning framework built upon a richer data structure that includes widely adopted topological domains. Specifically, we first introduce combinatorial complexes, a novel type of topological domain. Combinatorial complexes can be seen as generalizations of graphs that maintain certain desirable properties. Similar to hypergraphs, combinatorial complexes impose no constraints on the set of relations. In addition, combinatorial complexes permit the construction of hierarchical higher-order relations, analogous to those found in simplicial and cell complexes. Thus, combinatorial complexes generalize and combine useful traits of both hypergraphs and cell complexes, which have emerged as two promising abstractions that facilitate the generalization of graph neural networks to topological spaces. Second, building upon combinatorial complexes and their rich combinatorial and algebraic structure, we develop a general class of message-passing combinatorial complex neural networks (CCNNs), focusing primarily on attention-based CCNNs. We characterize permutation and orientation equivariances of CCNNs, and discuss pooling and unpooling operations within CCNNs in detail. Third, we evaluate the performance of CCNNs on tasks related to mesh shape analysis and graph learning. Our experiments demonstrate that CCNNs have competitive performance as compared to state-of-the-art deep learning models specifically tailored to the same tasks. Our findings demonstrate the advantages of incorporating higher-order relations into deep learning models in different applications.
Dog nose print matching with dual global descriptor based on Contrastive Learning
Authors: Bin Li, Zhongan Wang, Nan Wu, Shuai Shi, Qijun Ma
Date: 2022-06-01 00:00:00
Tasks: Contrastive Learning

Recent studies in biometric-based identification tasks have shown that deep learning methods can achieve better performance. These methods generally extract the global features as descriptor to represent the original image. Nonetheless, it does not perform well for biometric identification under fine-grained tasks. The main reason is that the single image descriptor contains insufficient information to represent image. In this paper, we present a dual global descriptor model, which combines multiple global descriptors to exploit multi level image features. Moreover, we utilize a contrastive loss to enlarge the distance between image representations of confusing classes. The proposed framework achieves the top2 on the CVPR2022 Biometrics Workshop Pet Biometric Challenge. The source code and trained models are publicly available at: https://github.com/flyingsheepbin/pet-biometrics
The Fully Convolutional Transformer for Medical Image Segmentation
Authors: Athanasios Tragakis, Chaitanya Kaul, Roderick Murray-Smith, Dirk Husmeier
Date: 2022-06-01 00:00:00
Tasks: Image Segmentation, Medical Image Analysis, Medical Image Segmentation, Semantic Segmentation

We propose a novel transformer model, capable of segmenting medical images of varying modalities. Challenges posed by the fine grained nature of medical image analysis mean that the adaptation of the transformer for their analysis is still at nascent stages. The overwhelming success of the UNet lay in its ability to appreciate the fine-grained nature of the segmentation task, an ability which existing transformer based models do not currently posses. To address this shortcoming, we propose The Fully Convolutional Transformer (FCT), which builds on the proven ability of Convolutional Neural Networks to learn effective image representations, and combines them with the ability of Transformers to effectively capture long-term dependencies in its inputs. The FCT is the first fully convolutional Transformer model in medical imaging literature. It processes its input in two stages, where first, it learns to extract long range semantic dependencies from the input image, and then learns to capture hierarchical global attributes from the features. FCT is compact, accurate and robust. Our results show that it outperforms all existing transformer architectures by large margins across multiple medical image segmentation datasets of varying data modalities without the need for any pre-training. FCT outperforms its immediate competitor on the ACDC dataset by 1.3%, on the Synapse dataset by 4.4%, on the Spleen dataset by 1.2% and on ISIC 2017 dataset by 1.1% on the dice metric, with up to five times fewer parameters. Our code, environments and models will be available via GitHub.
Impact of loss function in Deep Learning methods for accurate retinal vessel segmentation
Authors: Daniela Herrera, Gilberto Ochoa-Ruiz, Miguel Gonzalez-Mendoza, Christian Mata
Date: 2022-06-01 00:00:00
Tasks: Retinal Vessel Segmentation

The retinal vessel network studied through fundus images contributes to the diagnosis of multiple diseases not only found in the eye. The segmentation of this system may help the specialized task of analyzing these images by assisting in the quantification of morphological characteristics. Due to its relevance, several Deep Learning-based architectures have been tested for tackling this problem automatically. However, the impact of loss function selection on the segmentation of the intricate retinal blood vessel system hasn't been systematically evaluated. In this work, we present the comparison of the loss functions Binary Cross Entropy, Dice, Tversky, and Combo loss using the deep learning architectures (i.e. U-Net, Attention U-Net, and Nested UNet) with the DRIVE dataset. Their performance is assessed using four metrics: the AUC, the mean squared error, the dice score, and the Hausdorff distance. The models were trained with the same number of parameters and epochs. Using dice score and AUC, the best combination was SA-UNet with Combo loss, which had an average of 0.9442 and 0.809 respectively. The best average of Hausdorff distance and mean square error were obtained using the Nested U-Net with the Dice loss function, which had an average of 6.32 and 0.0241 respectively. The results showed that there is a significant difference in the selection of loss function
Deepfake Caricatures: Amplifying attention to artifacts increases deepfake detection by humans and machines
Authors: Camilo Fosco, Emilie Josephs, Alex Andonian, Allen Lee, Xi Wang, Aude Oliva
Date: 2022-06-01 00:00:00
Tasks: DeepFake Detection, Face Swapping, Human Detection, Misinformation

Deepfakes pose a serious threat to digital well-being by fueling misinformation. As deepfakes get harder to recognize with the naked eye, human users become increasingly reliant on deepfake detection models to decide if a video is real or fake. Currently, models yield a prediction for a video's authenticity, but do not integrate a method for alerting a human user. We introduce a framework for amplifying artifacts in deepfake videos to make them more detectable by people. We propose a novel, semi-supervised Artifact Attention module, which is trained on human responses to create attention maps that highlight video artifacts. These maps make two contributions. First, they improve the performance of our deepfake detection classifier. Second, they allow us to generate novel "Deepfake Caricatures": transformations of the deepfake that exacerbate artifacts to improve human detection. In a user study, we demonstrate that Caricatures greatly increase human detection, across video presentation times and user engagement levels. Overall, we demonstrate the success of a human-centered approach to designing deepfake mitigation methods.
Amodal Cityscapes: A New Dataset, its Generation, and an Amodal Semantic Segmentation Challenge Baseline
Authors: Jasmin Breitenstein, Tim Fingscheidt
Date: 2022-06-01 00:00:00
Tasks: Segmentation, Semantic Segmentation

Amodal perception terms the ability of humans to imagine the entire shapes of occluded objects. This gives humans an advantage to keep track of everything that is going on, especially in crowded situations. Typical perception functions, however, lack amodal perception abilities and are therefore at a disadvantage in situations with occlusions. Complex urban driving scenarios often experience many different types of occlusions and, therefore, amodal perception for automated vehicles is an important task to investigate. In this paper, we consider the task of amodal semantic segmentation and propose a generic way to generate datasets to train amodal semantic segmentation methods. We use this approach to generate an amodal Cityscapes dataset. Moreover, we propose and evaluate a method as baseline on Amodal Cityscapes, showing its applicability for amodal semantic segmentation in automotive environment perception. We provide the means to re-generate this dataset on github.