pwc-archive/papers-with-abstracts huggingface dataset:
SwiftLearn: A Data-Efficient Training Method of Deep Learning Models using Importance Sampling
Authors: Habib Hajimolahoseini, Omar Mohamed Awad, Walid Ahmed, Austin Wen, Saina Asani, Mohammad Hassanpour, Farnoosh Javadi, Mehdi Ahmadi, Foozhan Ataiefard, Kangling Liu, Yang Liu
Date: 2023-11-25 00:00:00

In this paper, we present SwiftLearn, a data-efficient approach to accelerate training of deep learning models using a subset of data samples selected during the warm-up stages of training. This subset is selected based on an importance criteria measured over the entire dataset during warm-up stages, aiming to preserve the model performance with fewer examples during the rest of training. The importance measure we propose could be updated during training every once in a while, to make sure that all of the data samples have a chance to return to the training loop if they show a higher importance. The model architecture is unchanged but since the number of data samples controls the number of forward and backward passes during training, we can reduce the training time by reducing the number of training samples used in each epoch of training. Experimental results on a variety of CV and NLP models during both pretraining and finetuning show that the model performance could be preserved while achieving a significant speed-up during training. More specifically, BERT finetuning on GLUE benchmark shows that almost 90% of the data can be dropped achieving an end-to-end average speedup of 3.36x while keeping the average accuracy drop less than 0.92%.
Localizing Lying in Llama: Understanding Instructed Dishonesty on True-False Questions Through Prompting, Probing, and Patching
Authors: James Campbell, Richard Ren, Phillip Guo
Date: 2023-11-25 00:00:00
Tasks: Prompt Engineering

Large language models (LLMs) demonstrate significant knowledge through their outputs, though it is often unclear whether false outputs are due to a lack of knowledge or dishonesty. In this paper, we investigate instructed dishonesty, wherein we explicitly prompt LLaMA-2-70b-chat to lie. We perform prompt engineering to find which prompts best induce lying behavior, and then use mechanistic interpretability approaches to localize where in the network this behavior occurs. Using linear probing and activation patching, we localize five layers that appear especially important for lying. We then find just 46 attention heads within these layers that enable us to causally intervene such that the lying model instead answers honestly. We show that these interventions work robustly across many prompts and dataset splits. Overall, our work contributes a greater understanding of dishonesty in LLMs so that we may hope to prevent it.
NCL-SM: A Fully Annotated Dataset of Images from Human Skeletal Muscle Biopsies
Authors: Atif Khan, Conor Lawless, Amy Vincent, Charlotte Warren, Valeria Di Leo, Tiago Gomes, A. Stephen McGough
Date: 2023-11-25 00:00:00
Tasks: Segmentation

Single cell analysis of human skeletal muscle (SM) tissue cross-sections is a fundamental tool for understanding many neuromuscular disorders. For this analysis to be reliable and reproducible, identification of individual fibres within microscopy images (segmentation) of SM tissue should be automatic and precise. Biomedical scientists in this field currently rely on custom tools and general machine learning (ML) models, both followed by labour intensive and subjective manual interventions to fine-tune segmentation. We believe that fully automated, precise, reproducible segmentation is possible by training ML models. However, in this important biomedical domain, there are currently no good quality, publicly available annotated imaging datasets available for ML model training. In this paper we release NCL-SM: a high quality bioimaging dataset of 46 human SM tissue cross-sections from both healthy control subjects and from patients with genetically diagnosed muscle pathology. These images include $>$ 50k manually segmented muscle fibres (myofibres). In addition we also curated high quality myofibre segmentations, annotating reasons for rejecting low quality myofibres and low quality regions in SM tissue images, making these annotations completely ready for downstream analysis. This, we believe, will pave the way for development of a fully automatic pipeline that identifies individual myofibres within images of tissue sections and, in particular, also classifies individual myofibres that are fit for further analysis.
Everybody Needs a Little HELP: Explaining Graphs via Hierarchical Concepts
Authors: Jonas Jürß, Lucie Charlotte Magister, Pietro Barbiero, Pietro Liò, Nikola Simidjievski
Date: 2023-11-25 00:00:00
Tasks: Drug Discovery, Travel Time Estimation

Graph neural networks (GNNs) have led to major breakthroughs in a variety of domains such as drug discovery, social network analysis, and travel time estimation. However, they lack interpretability which hinders human trust and thereby deployment to settings with high-stakes decisions. A line of interpretable methods approach this by discovering a small set of relevant concepts as subgraphs in the last GNN layer that together explain the prediction. This can yield oversimplified explanations, failing to explain the interaction between GNN layers. To address this oversight, we provide HELP (Hierarchical Explainable Latent Pooling), a novel, inherently interpretable graph pooling approach that reveals how concepts from different GNN layers compose to new ones in later steps. HELP is more than 1-WL expressive and is the first non-spectral, end-to-end-learnable, hierarchical graph pooling method that can learn to pool a variable number of arbitrary connected components. We empirically demonstrate that it performs on-par with standard GCNs and popular pooling methods in terms of accuracy while yielding explanations that are aligned with expert knowledge in the domains of chemistry and social networks. In addition to a qualitative analysis, we employ concept completeness scores as well as concept conformity, a novel metric to measure the noise in discovered concepts, quantitatively verifying that the discovered concepts are significantly easier to fully understand than those from previous work. Our work represents a first step towards an understanding of graph neural networks that goes beyond a set of concepts from the final layer and instead explains the complex interplay of concepts on different levels.
Leveraging Diffusion Perturbations for Measuring Fairness in Computer Vision
Authors: Nicholas Lui, Bryan Chia, William Berrios, Candace Ross, Douwe Kiela
Date: 2023-11-25 00:00:00
Tasks: Fairness

Computer vision models have been known to encode harmful biases, leading to the potentially unfair treatment of historically marginalized groups, such as people of color. However, there remains a lack of datasets balanced along demographic traits that can be used to evaluate the downstream fairness of these models. In this work, we demonstrate that diffusion models can be leveraged to create such a dataset. We first use a diffusion model to generate a large set of images depicting various occupations. Subsequently, each image is edited using inpainting to generate multiple variants, where each variant refers to a different perceived race. Using this dataset, we benchmark several vision-language models on a multi-class occupation classification task. We find that images generated with non-Caucasian labels have a significantly higher occupation misclassification rate than images generated with Caucasian labels, and that several misclassifications are suggestive of racial biases. We measure a model's downstream fairness by computing the standard deviation in the probability of predicting the true occupation label across the different perceived identity groups. Using this fairness metric, we find significant disparities between the evaluated vision-and-language models. We hope that our work demonstrates the potential value of diffusion methods for fairness evaluations.
Unbalancedness in Neural Monge Maps Improves Unpaired Domain Translation
Authors: Luca Eyring, Dominik Klein, Théo Uscidda, Giovanni Palla, Niki Kilbertus, Zeynep Akata, Fabian Theis
Date: 2023-11-25 00:00:00
Tasks: Translation

In optimal transport (OT), a Monge map is known as a mapping that transports a source distribution to a target distribution in the most cost-efficient way. Recently, multiple neural estimators for Monge maps have been developed and applied in diverse unpaired domain translation tasks, e.g. in single-cell biology and computer vision. However, the classic OT framework enforces mass conservation, which makes it prone to outliers and limits its applicability in real-world scenarios. The latter can be particularly harmful in OT domain translation tasks, where the relative position of a sample within a distribution is explicitly taken into account. While unbalanced OT tackles this challenge in the discrete setting, its integration into neural Monge map estimators has received limited attention. We propose a theoretically grounded method to incorporate unbalancedness into any Monge map estimator. We improve existing estimators to model cell trajectories over time and to predict cellular responses to perturbations. Moreover, our approach seamlessly integrates with the OT flow matching (OT-FM) framework. While we show that OT-FM performs competitively in image translation, we further improve performance by incorporating unbalancedness (UOT-FM), which better preserves relevant features. We hence establish UOT-FM as a principled method for unpaired image translation.
Weakly-Supervised Audio-Visual Segmentation
Date: 2023-11-25 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Contrastive Learning, Segmentation

Audio-visual segmentation is a challenging task that aims to predict pixel-level masks for sound sources in a video. Previous work applied a comprehensive manually designed architecture with countless pixel-wise accurate masks as supervision. However, these pixel-level masks are expensive and not available in all cases. In this work, we aim to simplify the supervision as the instance-level annotation, i.e., weakly-supervised audio-visual segmentation. We present a novel Weakly-Supervised Audio-Visual Segmentation framework, namely WS-AVS, that can learn multi-scale audio-visual alignment with multi-scale multiple-instance contrastive learning for audio-visual segmentation. Extensive experiments on AVSBench demonstrate the effectiveness of our WS-AVS in the weakly-supervised audio-visual segmentation of single-source and multi-source scenarios.
Introducing SSBD+ Dataset with a Convolutional Pipeline for detecting Self-Stimulatory Behaviours in Children using raw videos
Authors: Vaibhavi Lokegaonkar, Vijay Jaisankar, Pon Deepika, Madhav Rao, T K Srikanth, Sarbani Mallick, Manjit Sodhi
Date: 2023-11-25 00:00:00
Tasks: Action Detection

Conventionally, evaluation for the diagnosis of Autism spectrum disorder is done by a trained specialist through questionnaire-based formal assessments and by observation of behavioral cues under various settings to capture the early warning signs of autism. These evaluation techniques are highly subjective and their accuracy relies on the experience of the specialist. In this regard, machine learning-based methods for automated capturing of early signs of autism from the recorded videos of the children is a promising alternative. In this paper, the authors propose a novel pipelined deep learning architecture to detect certain self-stimulatory behaviors that help in the diagnosis of autism spectrum disorder (ASD). The authors also supplement their tool with an augmented version of the Self Stimulatory Behavior Dataset (SSBD) and also propose a new label in SSBD Action detection: no-class. The deep learning model with the new dataset is made freely available for easy adoption to the researchers and developers community. An overall accuracy of around 81% was achieved from the proposed pipeline model that is targeted for real-time and hands-free automated diagnosis. All of the source code, data, licenses of use, and other relevant material is made freely available in https://github.com/sarl-iiitb/
Accurate and interpretable drug-drug interaction prediction enabled by knowledge subgraph learning
Authors: Yaqing Wang, Zaifei Yang, Quanming Yao
Date: 2023-11-25 00:00:00
Tasks: Graph Neural Network, Knowledge Graphs

Background: Discovering potential drug-drug interactions (DDIs) is a long-standing challenge in clinical treatments and drug developments. Recently, deep learning techniques have been developed for DDI prediction. However, they generally require a huge number of samples, while known DDIs are rare. Methods: In this work, we present KnowDDI, a graph neural network-based method that addresses the above challenge. KnowDDI enhances drug representations by adaptively leveraging rich neighborhood information from large biomedical knowledge graphs. Then, it learns a knowledge subgraph for each drug-pair to interpret the predicted DDI, where each of the edges is associated with a connection strength indicating the importance of a known DDI or resembling strength between a drug-pair whose connection is unknown. Thus, the lack of DDIs is implicitly compensated by the enriched drug representations and propagated drug similarities. Results: We evaluate KnowDDI on two benchmark DDI datasets. Results show that KnowDDI obtains the state-of-the-art prediction performance with better interpretability. We also find that KnowDDI suffers less than existing works given a sparser knowledge graph. This indicates that the propagated drug similarities play a more important role in compensating for the lack of DDIs when the drug representations are less enriched. Conclusions: KnowDDI nicely combines the efficiency of deep learning techniques and the rich prior knowledge in biomedical knowledge graphs. As an original open-source tool, KnowDDI can help detect possible interactions in a broad range of relevant interaction prediction tasks, such as protein-protein interactions, drug-target interactions and disease-gene interactions, eventually promoting the development of biomedicine and healthcare.
MPCNN: A Novel Matrix Profile Approach for CNN-based Sleep Apnea Classification
Authors: Hieu X. Nguyen, Duong V. Nguyen, Hieu H. Pham, Cuong D. Do
Date: 2023-11-25 00:00:00
Tasks: Diagnostic, ECG Classification

Sleep apnea (SA) is a significant respiratory condition that poses a major global health challenge. Previous studies have investigated several machine and deep learning models for electrocardiogram (ECG)-based SA diagnoses. Despite these advancements, conventional feature extractions derived from ECG signals, such as R-peaks and RR intervals, may fail to capture crucial information encompassed within the complete PQRST segments. In this study, we propose an innovative approach to address this diagnostic gap by delving deeper into the comprehensive segments of the ECG signal. The proposed methodology draws inspiration from Matrix Profile algorithms, which generate an Euclidean distance profile from fixed-length signal subsequences. From this, we derived the Min Distance Profile (MinDP), Max Distance Profile (MaxDP), and Mean Distance Profile (MeanDP) based on the minimum, maximum, and mean of the profile distances, respectively. To validate the effectiveness of our approach, we use the modified LeNet-5 architecture as the primary CNN model, along with two existing lightweight models, BAFNet and SE-MSCNN, for ECG classification tasks. Our extensive experimental results on the PhysioNet Apnea-ECG dataset revealed that with the new feature extraction method, we achieved a per-segment accuracy up to 92.11 \% and a per-recording accuracy of 100\%. Moreover, it yielded the highest correlation compared to state-of-the-art methods, with a correlation coefficient of 0.989. By introducing a new feature extraction method based on distance relationships, we enhanced the performance of certain lightweight models, showing potential for home sleep apnea test (HSAT) and SA detection in IoT devices. The source code for this work is made publicly available in GitHub: https://github.com/vinuni-vishc/MPCNN-Sleep-Apnea.
On-Device Soft Sensors: Real-Time Fluid Flow Estimation from Level Sensor Data
Authors: Tianheng Ling, Chao Qian, Gregor Schiele
Date: 2023-11-25 00:00:00
Tasks: Sensor Fusion

Soft sensors are crucial in bridging autonomous systems' physical and digital realms, enhancing sensor fusion and perception. Instead of deploying soft sensors on the Cloud, this study shift towards employing on-device soft sensors, promising heightened efficiency and bolstering data security. Our approach substantially improves energy efficiency by deploying Artificial Intelligence (AI) directly on devices within a wireless sensor network. Furthermore, the synergistic integration of the Microcontroller Unit and Field-Programmable Gate Array (FPGA) leverages the rapid AI inference capabilities of the latter. Empirical evidence from our real-world use case demonstrates that FPGA-based soft sensors achieve inference times ranging remarkably from 1.04 to 12.04 microseconds. These compelling results highlight the considerable potential of our innovative approach for executing real-time inference tasks efficiently, thereby presenting a feasible alternative that effectively addresses the latency challenges intrinsic to Cloud-based deployments.
Agent as Cerebrum, Controller as Cerebellum: Implementing an Embodied LMM-based Agent on Drones
Authors: Haoran Zhao, Fengxing Pan, Huqiuyue Ping, Yaoming Zhou
Date: 2023-11-25 00:00:00
Tasks: Deep Reinforcement Learning

In this study, we present a novel paradigm for industrial robotic embodied agents, encapsulating an 'agent as cerebrum, controller as cerebellum' architecture. Our approach harnesses the power of Large Multimodal Models (LMMs) within an agent framework known as AeroAgent, tailored for drone technology in industrial settings. To facilitate seamless integration with robotic systems, we introduce ROSchain, a bespoke linkage framework connecting LMM-based agents to the Robot Operating System (ROS). We report findings from extensive empirical research, including simulated experiments on the Airgen and real-world case study, particularly in individual search and rescue operations. The results demonstrate AeroAgent's superior performance in comparison to existing Deep Reinforcement Learning (DRL)-based agents, highlighting the advantages of the embodied LMM in complex, real-world scenarios.
E-CORE: Emotion Correlation Enhanced Empathetic Dialogue Generation
Authors: Fengyi Fu, Lei Zhang, Quan Wang, Zhendong Mao
Date: 2023-11-25 00:00:00
Tasks: Decoder, Dialogue Generation, Response Generation

Achieving empathy is a crucial step toward humanized dialogue systems. Current approaches for empathetic dialogue generation mainly perceive an emotional label to generate an empathetic response conditioned on it, which simply treat emotions independently, but ignore the intrinsic emotion correlation in dialogues, resulting in inaccurate emotion perception and unsuitable response generation. In this paper, we propose a novel emotion correlation enhanced empathetic dialogue generation framework, which comprehensively realizes emotion correlation learning, utilization, and supervising. Specifically, a multi-resolution emotion graph is devised to capture context-based emotion interactions from different resolutions, further modeling emotion correlation. Then we propose an emotion correlation enhanced decoder, with a novel correlation-aware aggregation and soft/hard strategy, respectively improving the emotion perception and response generation. Experimental results on the benchmark dataset demonstrate the superiority of our model in both empathetic perception and expression.
Exploring Causal Learning through Graph Neural Networks: An In-depth Review
Authors: Simi Job, Xiaohui Tao, Taotao Cai, Haoran Xie, Lin Li, Jianming Yong, Qing Li
Date: 2023-11-25 00:00:00
Tasks: Decision Making

In machine learning, exploring data correlations to predict outcomes is a fundamental task. Recognizing causal relationships embedded within data is pivotal for a comprehensive understanding of system dynamics, the significance of which is paramount in data-driven decision-making processes. Beyond traditional methods, there has been a surge in the use of graph neural networks (GNNs) for causal learning, given their capabilities as universal data approximators. Thus, a thorough review of the advancements in causal learning using GNNs is both relevant and timely. To structure this review, we introduce a novel taxonomy that encompasses various state-of-the-art GNN methods employed in studying causality. GNNs are further categorized based on their applications in the causality domain. We further provide an exhaustive compilation of datasets integral to causal learning with GNNs to serve as a resource for practical study. This review also touches upon the application of causal learning across diverse sectors. We conclude the review with insights into potential challenges and promising avenues for future exploration in this rapidly evolving field of machine learning.
Effective Backdoor Mitigation in Vision-Language Models Depends on the Pre-training Objective
Authors: Sahil Verma, Gantavya Bhatt, Avi Schwarzschild, Soumye Singhal, Arnav Mohanty Das, Chirag Shah, John P Dickerson, Pin-Yu Chen, Jeff Bilmes
Date: 2023-11-25 00:00:00
Tasks: zero-shot-classification, Zero-Shot Learning

Despite the advanced capabilities of contemporary machine learning (ML) models, they remain vulnerable to adversarial and backdoor attacks. This vulnerability is particularly concerning in real-world deployments, where compromised models may exhibit unpredictable behavior in critical scenarios. Such risks are heightened by the prevalent practice of collecting massive, internet-sourced datasets for training multimodal models, as these datasets may harbor backdoors. Various techniques have been proposed to mitigate the effects of backdooring in multimodal models, such as CleanCLIP, which is the current state-of-the-art approach. In this work, we demonstrate that the efficacy of CleanCLIP in mitigating backdoors is highly dependent on the particular objective used during model pre-training. We observe that stronger pre-training objectives that lead to higher zero-shot classification performance correlate with harder to remove backdoors behaviors. We show this by training multimodal models on two large datasets consisting of 3 million (CC3M) and 6 million (CC6M) datapoints, under various pre-training objectives, followed by poison removal using CleanCLIP. We find that CleanCLIP, even with extensive hyperparameter tuning, is ineffective in poison removal when stronger pre-training objectives are used. Our findings underscore critical considerations for ML practitioners who train models using large-scale web-curated data and are concerned about potential backdoor threats.