pwc-archive/papers-with-abstracts huggingface dataset:
HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networks
Authors: Yihong Ma, Ning Yan, Jiayu Li, Masood Mortazavi, Nitesh V. Chawla
Date: 2023-10-23 00:00:00
Tasks: Node Classification

Graphs have emerged as a natural choice to represent and analyze the intricate patterns and rich information of the Web, enabling applications such as online page classification and social recommendation. The prevailing "pre-train, fine-tune" paradigm has been widely adopted in graph machine learning tasks, particularly in scenarios with limited labeled nodes. However, this approach often exhibits a misalignment between the training objectives of pretext tasks and those of downstream tasks. This gap can result in the "negative transfer" problem, wherein the knowledge gained from pre-training adversely affects performance in the downstream tasks. The surge in prompt-based learning within Natural Language Processing (NLP) suggests the potential of adapting a "pre-train, prompt" paradigm to graphs as an alternative. However, existing graph prompting techniques are tailored to homogeneous graphs, neglecting the inherent heterogeneity of Web graphs. To bridge this gap, we propose HetGPT, a general post-training prompting framework to improve the predictive performance of pre-trained heterogeneous graph neural networks (HGNNs). The key is the design of a novel prompting function that integrates a virtual class prompt and a heterogeneous feature prompt, with the aim to reformulate downstream tasks to mirror pretext tasks. Moreover, HetGPT introduces a multi-view neighborhood aggregation mechanism, capturing the complex neighborhood structure in heterogeneous graphs. Extensive experiments on three benchmark datasets demonstrate HetGPT's capability to enhance the performance of state-of-the-art HGNNs on semi-supervised node classification.
Toward a Critical Toponymy Framework for Named Entity Recognition: A Case Study of Airbnb in New York City
Authors: Mikael Brunila, Jack LaViolette, Sky CH-Wang, Priyanka Verma, Clara Féré, Grant McKenzie
Date: 2023-10-23 00:00:00
Tasks: named-entity-recognition, Named Entity Recognition, Named Entity Recognition (NER), NER, Toponym Recognition

Critical toponymy examines the dynamics of power, capital, and resistance through place names and the sites to which they refer. Studies here have traditionally focused on the semantic content of toponyms and the top-down institutional processes that produce them. However, they have generally ignored the ways in which toponyms are used by ordinary people in everyday discourse, as well as the other strategies of geospatial description that accompany and contextualize toponymic reference. Here, we develop computational methods to measure how cultural and economic capital shape the ways in which people refer to places, through a novel annotated dataset of 47,440 New York City Airbnb listings from the 2010s. Building on this dataset, we introduce a new named entity recognition (NER) model able to identify important discourse categories integral to the characterization of place. Our findings point toward new directions for critical toponymy and to a range of previously understudied linguistic signals relevant to research on neighborhood status, housing and tourism markets, and gentrification.
Neural Network with Local Converging Input (NNLCI) for Supersonic Flow Problems with Unstructured Grids
Authors: Weiming Ding, Haoxiang Huang, Tzu Jung Lee, Yingjie Liu, Vigor Yang
Date: 2023-10-23 00:00:00

In recent years, surrogate models based on deep neural networks (DNN) have been widely used to solve partial differential equations, which were traditionally handled by means of numerical simulations. This kind of surrogate models, however, focuses on global interpolation of the training dataset, and thus requires a large network structure. The process is both time consuming and computationally costly, thereby restricting their use for high-fidelity prediction of complex physical problems. In the present study, we develop a neural network with local converging input (NNLCI) for high-fidelity prediction using unstructured data. The framework utilizes the local domain of dependence with converging coarse solutions as input, which greatly reduces computational resource and training time. As a validation case, the NNLCI method is applied to study inviscid supersonic flows in channels with bumps. Different bump geometries and locations are considered to benchmark the effectiveness and versability of the proposed approach. Detailed flow structures, including shock-wave interactions, are examined systematically.
TaskDiff: A Similarity Metric for Task-Oriented Conversations
Authors: Ankita Bhaumik, Praveen Venkateswaran, Yara Rizk, Vatche Isahagian
Date: 2023-10-23 00:00:00
Tasks: Prompt Engineering, Response Generation

The popularity of conversational digital assistants has resulted in the availability of large amounts of conversational data which can be utilized for improved user experience and personalized response generation. Building these assistants using popular large language models like ChatGPT also require additional emphasis on prompt engineering and evaluation methods. Textual similarity metrics are a key ingredient for such analysis and evaluations. While many similarity metrics have been proposed in the literature, they have not proven effective for task-oriented conversations as they do not take advantage of unique conversational features. To address this gap, we present TaskDiff, a novel conversational similarity metric that utilizes different dialogue components (utterances, intents, and slots) and their distributions to compute similarity. Extensive experimental evaluation of TaskDiff on a benchmark dataset demonstrates its superior performance and improved robustness over other related approaches.
DeTiME: Diffusion-Enhanced Topic Modeling using Encoder-decoder based LLM
Authors: Weijie Xu, Wenxiang Hu, Fanyou Wu, Srinivasan Sengamedu
Date: 2023-10-23 00:00:00
Tasks: Decoder, Text Generation, Topic Models

In the burgeoning field of natural language processing (NLP), Neural Topic Models (NTMs) , Large Language Models (LLMs) and Diffusion model have emerged as areas of significant research interest. Despite this, NTMs primarily utilize contextual embeddings from LLMs, which are not optimal for clustering or capable for topic based text generation. NTMs have never been combined with diffusion model for text generation. Our study addresses these gaps by introducing a novel framework named Diffusion-Enhanced Topic Modeling using Encoder-Decoder-based LLMs (DeTiME). DeTiME leverages Encoder-Decoder-based LLMs to produce highly clusterable embeddings that could generate topics that exhibit both superior clusterability and enhanced semantic coherence compared to existing methods. Additionally, by exploiting the power of diffusion model, our framework also provides the capability to do topic based text generation. This dual functionality allows users to efficiently produce highly clustered topics and topic based text generation simultaneously. DeTiME's potential extends to generating clustered embeddings as well. Notably, our proposed framework(both encoder-decoder based LLM and diffusion model) proves to be efficient to train and exhibits high adaptability to other LLMs and diffusion model, demonstrating its potential for a wide array of applications.
Active teacher selection for reinforcement learning from human feedback
Authors: Rachel Freedman, Justin Svegliato, Kyle Wray, Stuart Russell
Date: 2023-10-23 00:00:00
Tasks: Recommendation Systems, reinforcement-learning, Reinforcement Learning

Reinforcement learning from human feedback (RLHF) enables machine learning systems to learn objectives from human feedback. A core limitation of these systems is their assumption that all feedback comes from a single human teacher, despite querying a range of distinct teachers. We propose the Hidden Utility Bandit (HUB) framework to model differences in teacher rationality, expertise, and costliness, formalizing the problem of learning from multiple teachers. We develop a variety of solution algorithms and apply them to two real-world domains: paper recommendation systems and COVID-19 vaccine testing. We find that the Active Teacher Selection (ATS) algorithm outperforms baseline algorithms by actively selecting when and which teacher to query. The HUB framework and ATS algorithm demonstrate the importance of leveraging differences between teachers to learn accurate reward models, facilitating future research on active teacher selection for robust reward modeling.
1 From the Pursuit of Universal AGI Architecture to Systematic Approach to Heterogenous AGI: Addressing Alignment, Energy, & AGI Grand Challenges
Authors: Eren Kurshan
Date: 2023-10-23 00:00:00
Tasks: Ethics

AI faces a trifecta of grand challenges: the Energy Wall, the Alignment Problem and the Leap from Narrow AI to AGI. Contemporary AI solutions consume unsustainable amounts of energy during model training and daily operations. Making things worse, the amount of computation required to train each new AI model has been doubling every 2 months since 2020, directly translating to unprecedented increases in energy consumption. The leap from AI to AGI requires multiple functional subsystems operating in a balanced manner, which requires a system architecture. However, the current approach to artificial intelligence lacks system design; even though system characteristics play a key role in the human brain; from the way it processes information to how it makes decisions. System design is the key to alignment, one of the most challenging goals in AI. This difficulty stems from the fact that the complexity of human moral system requires a similarly sophisticated system for alignment. Without accurately reflecting the complexity of these core moral subsystems and systems, aligning AI with human values becomes significantly more challenging. In this paper, we posit that system design is the missing piece in overcoming the grand challenges. We present a Systematic Approach to AGI that utilizes system design principles to AGI, while providing ways to overcome the energy wall and the alignment challenges. This paper asserts that artificial intelligence can be realized through a multiplicity of design-specific pathways, rather than a singular, overarching AGI architecture. AGI systems may exhibit diverse architectural configurations and capabilities, contingent upon their intended use cases. It advocates for a focus on employing system design principles as a guiding framework, rather than solely concentrating on a universal AGI architecture.
Towards Possibilities & Impossibilities of AI-generated Text Detection: A Survey
Authors: Soumya Suvra Ghosal, Souradip Chakraborty, Jonas Geiping, Furong Huang, Dinesh Manocha, Amrit Singh Bedi
Date: 2023-10-23 00:00:00
Tasks: Misinformation, Survey, Text Detection

Large Language Models (LLMs) have revolutionized the domain of natural language processing (NLP) with remarkable capabilities of generating human-like text responses. However, despite these advancements, several works in the existing literature have raised serious concerns about the potential misuse of LLMs such as spreading misinformation, generating fake news, plagiarism in academia, and contaminating the web. To address these concerns, a consensus among the research community is to develop algorithmic solutions to detect AI-generated text. The basic idea is that whenever we can tell if the given text is either written by a human or an AI, we can utilize this information to address the above-mentioned concerns. To that end, a plethora of detection frameworks have been proposed, highlighting the possibilities of AI-generated text detection. But in parallel to the development of detection frameworks, researchers have also concentrated on designing strategies to elude detection, i.e., focusing on the impossibilities of AI-generated text detection. This is a crucial step in order to make sure the detection frameworks are robust enough and it is not too easy to fool a detector. Despite the huge interest and the flurry of research in this domain, the community currently lacks a comprehensive analysis of recent developments. In this survey, we aim to provide a concise categorization and overview of current work encompassing both the prospects and the limitations of AI-generated text detection. To enrich the collective knowledge, we engage in an exhaustive discussion on critical and challenging open questions related to ongoing research on AI-generated text detection.
Reference Free Domain Adaptation for Translation of Noisy Questions with Question Specific Rewards
Authors: Baban Gain, Ramakrishna Appicharla, Soumya Chennabasavaraj, Nikesh Garera, Asif Ekbal, Muthusamy Chelliah
Date: 2023-10-23 00:00:00
Tasks: Community Question Answering, Domain Adaptation, Language Modelling, Machine Translation, NMT, Question Answering

Community Question-Answering (CQA) portals serve as a valuable tool for helping users within an organization. However, making them accessible to non-English-speaking users continues to be a challenge. Translating questions can broaden the community's reach, benefiting individuals with similar inquiries in various languages. Translating questions using Neural Machine Translation (NMT) poses more challenges, especially in noisy environments, where the grammatical correctness of the questions is not monitored. These questions may be phrased as statements by non-native speakers, with incorrect subject-verb order and sometimes even missing question marks. Creating a synthetic parallel corpus from such data is also difficult due to its noisy nature. To address this issue, we propose a training methodology that fine-tunes the NMT system only using source-side data. Our approach balances adequacy and fluency by utilizing a loss function that combines BERTScore and Masked Language Model (MLM) Score. Our method surpasses the conventional Maximum Likelihood Estimation (MLE) based fine-tuning approach, which relies on synthetic target data, by achieving a 1.9 BLEU score improvement. Our model exhibits robustness while we add noise to our baseline, and still achieve 1.1 BLEU improvement and large improvements on TER and BLEURT metrics. Our proposed methodology is model-agnostic and is only necessary during the training phase. We make the codes and datasets publicly available at \url{https://www.iitp.ac.in/~ai-nlp-ml/resources.html#DomainAdapt} for facilitating further research.
CRoW: Benchmarking Commonsense Reasoning in Real-World Tasks
Authors: Mete Ismayilzada, Debjit Paul, Syrielle Montariol, Mor Geva, Antoine Bosselut
Date: 2023-10-23 00:00:00
Tasks: Benchmarking

Recent efforts in natural language processing (NLP) commonsense reasoning research have yielded a considerable number of new datasets and benchmarks. However, most of these datasets formulate commonsense reasoning challenges in artificial scenarios that are not reflective of the tasks which real-world NLP systems are designed to solve. In this work, we present CRoW, a manually-curated, multi-task benchmark that evaluates the ability of models to apply commonsense reasoning in the context of six real-world NLP tasks. CRoW is constructed using a multi-stage data collection pipeline that rewrites examples from existing datasets using commonsense-violating perturbations. We use CRoW to study how NLP systems perform across different dimensions of commonsense knowledge, such as physical, temporal, and social reasoning. We find a significant performance gap when NLP systems are evaluated on CRoW compared to humans, showcasing that commonsense reasoning is far from being solved in real-world task settings. We make our dataset and leaderboard available to the research community at https://github.com/mismayil/crow.
New approach to template banks of gravitational waves with higher harmonics: Reducing matched-filtering cost by over an order of magnitude
Authors: Digvijay Wadekar, Tejaswi Venumadhav, Ajit Kumar Mehta, Javier Roulet, Seth Olsen, Jonathan Mushkin, Barak Zackay, Matias Zaldarriaga
Date: 2023-10-23 00:00:00

Searches for gravitational wave events use models, or templates, for the signals of interest. The templates used in current searches in the LIGO-Virgo-Kagra (LVK) data model the dominant quadrupole mode $(\ell,|m|)=(2,2)$ of the signals, and omit sub-dominant higher-order modes (HM) such as $(\ell,|m|)=(3,3)$, $(4,4)$, which are predicted by general relativity. This omission reduces search sensitivity to black hole mergers in interesting parts of parameter space, such as systems with high masses and asymmetric mass-ratios. We develop a new strategy to include HM in template banks: instead of making templates containing a combination of different modes, we separately store normalized templates corresponding to $(2,2)$, $(3,3)$ and $(4,4)$ modes. To model aligned-spin $(3,3)$, $(4,4)$ waveforms corresponding to a given $(2,2)$ waveform, we use a combination of post-Newtonian formulae and machine learning tools. In the matched filtering stage, one can filter each mode separately with the data and collect the timeseries of signal-to-noise ratios (SNR). This leads to a HM template bank whose matched-filtering cost is just $\approx 3\times$ that of a quadrupole-only search (as opposed to $\approx\! 100 \times$ in previously proposed HM search methods). Our method is effectual and generally applicable for template banks constructed with either stochastic or geometric placement techniques. New GW candidate events that we detect using our HM banks and details for combining the different SNR mode timeseries are presented in accompanying papers: Wadekar et al. [1] and [2] respectively. Additionally, we discuss non-linear compression of $(2,2)$-only geometric-placement template banks using machine learning algorithms.
Modeling Path Importance for Effective Alzheimer's Disease Drug Repurposing
Authors: Shunian Xiang, Patrick J. Lawrence, Bo Peng, ChienWei Chiang, Dokyoon Kim, Li Shen, Xia Ning
Date: 2023-10-23 00:00:00
Tasks: Drug Discovery

Recently, drug repurposing has emerged as an effective and resource-efficient paradigm for AD drug discovery. Among various methods for drug repurposing, network-based methods have shown promising results as they are capable of leveraging complex networks that integrate multiple interaction types, such as protein-protein interactions, to more effectively identify candidate drugs. However, existing approaches typically assume paths of the same length in the network have equal importance in identifying the therapeutic effect of drugs. Other domains have found that same length paths do not necessarily have the same importance. Thus, relying on this assumption may be deleterious to drug repurposing attempts. In this work, we propose MPI (Modeling Path Importance), a novel network-based method for AD drug repurposing. MPI is unique in that it prioritizes important paths via learned node embeddings, which can effectively capture a network's rich structural information. Thus, leveraging learned embeddings allows MPI to effectively differentiate the importance among paths. We evaluate MPI against a commonly used baseline method that identifies anti-AD drug candidates primarily based on the shortest paths between drugs and AD in the network. We observe that among the top-50 ranked drugs, MPI prioritizes 20.0% more drugs with anti-AD evidence compared to the baseline. Finally, Cox proportional-hazard models produced from insurance claims data aid us in identifying the use of etodolac, nicotine, and BBB-crossing ACE-INHs as having a reduced risk of AD, suggesting such drugs may be viable candidates for repurposing and should be explored further in future studies.
Predicting Transcription Factor Binding Sites using Transformer based Capsule Network
Authors: Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici
Date: 2023-10-23 00:00:00

Prediction of binding sites for transcription factors is important to understand how they regulate gene expression and how this regulation can be modulated for therapeutic purposes. Although in the past few years there are significant works addressing this issue, there is still space for improvement. In this regard, a transformer based capsule network viz. DNABERT-Cap is proposed in this work to predict transcription factor binding sites mining ChIP-seq datasets. DNABERT-Cap is a bidirectional encoder pre-trained with large number of genomic DNA sequences, empowered with a capsule layer responsible for the final prediction. The proposed model builds a predictor for transcription factor binding sites using the joint optimisation of features encompassing both bidirectional encoder and capsule layer, along with convolutional and bidirectional long-short term memory layers. To evaluate the efficiency of the proposed approach, we use a benchmark ChIP-seq datasets of five cell lines viz. A549, GM12878, Hep-G2, H1-hESC and Hela, available in the ENCODE repository. The results show that the average area under the receiver operating characteristic curve score exceeds 0.91 for all such five cell lines. DNABERT-Cap is also compared with existing state-of-the-art deep learning based predictors viz. DeepARC, DeepTF, CNN-Zeng and DeepBind, and is seen to outperform them.
A Skin Microbiome Model with AMP interactions and Analysis of Quasi-Stability vs Stability in Population Dynamics
Authors: Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios Stamatas
Date: 2023-10-23 00:00:00

The skin microbiome plays an important role in the maintenance of a healthy skin. It is an ecosystem, composed of several species, competing for resources and interacting with the skin cells. Imbalance in the cutaneous microbiome, also called dysbiosis, has been correlated with several skin conditions, including acne and atopic dermatitis. Generally, dysbiosis is linked to colonization of the skin by a population of opportunistic pathogenic bacteria. Treatments consisting in non-specific elimination of cutaneous microflora have shown conflicting results. In this article, we introduce a mathematical model based on ordinary differential equations, with 2 types of bacteria populations (skin commensals and opportunistic pathogens) and including the production of antimicrobial peptides to study the mechanisms driving the dominance of one population over the other. By using published experimental data, assumed to correspond to the observation of stable states in our model, we reduce the number of parameters of the model from 13 to 5. We then use a formal specification in quantitative temporal logic to calibrate our model by global parameter optimization and perform sensitivity analyses. On the time scale of 2 days of the experiments, the model predicts that certain changes of the environment, like the elevation of skin surface pH, create favorable conditions for the emergence and colonization of the skin by the opportunistic pathogen population, while the production of human AMPs has non-linear effect on the balance between pathogens and commensals. Surprisingly, simulations on longer time scales reveal that the equilibrium reached around 2 days can in fact be a quasi-stable state followed by the reaching of a reversed stable state after 12 days or more. We analyse the conditions of quasi-stability observed in this model using tropical algebraic methods, and show their non-generic character in contrast to slow-fast systems. These conditions are then generalized to a large class of population dynamics models over any number of species.