pwc-archive/papers-with-abstracts huggingface dataset:
Self-Supervised Pretraining Improves Performance and Inference Efficiency in Multiple Lung Ultrasound Interpretation Tasks
Authors: Blake VanBerlo, Brian Li, Jesse Hoey, Alexander Wong
Date: 2023-09-05 00:00:00

In this study, we investigated whether self-supervised pretraining could produce a neural network feature extractor applicable to multiple classification tasks in B-mode lung ultrasound analysis. When fine-tuning on three lung ultrasound tasks, pretrained models resulted in an improvement of the average across-task area under the receiver operating curve (AUC) by 0.032 and 0.061 on local and external test sets respectively. Compact nonlinear classifiers trained on features outputted by a single pretrained model did not improve performance across all tasks; however, they did reduce inference time by 49% compared to serial execution of separate fine-tuned models. When training using 1% of the available labels, pretrained models consistently outperformed fully supervised models, with a maximum observed test AUC increase of 0.396 for the task of view classification. Overall, the results indicate that self-supervised pretraining is useful for producing initial weights for lung ultrasound classifiers.
Emphysema Subtyping on Thoracic Computed Tomography Scans using Deep Neural Networks
Authors: Weiyi Xie, Colin Jacobs, Jean-Paul Charbonnier, Dirk Jan Slebos, Bram van Ginneken
Date: 2023-09-05 00:00:00
Tasks: Management

Accurate identification of emphysema subtypes and severity is crucial for effective management of COPD and the study of disease heterogeneity. Manual analysis of emphysema subtypes and severity is laborious and subjective. To address this challenge, we present a deep learning-based approach for automating the Fleischner Society's visual score system for emphysema subtyping and severity analysis. We trained and evaluated our algorithm using 9650 subjects from the COPDGene study. Our algorithm achieved the predictive accuracy at 52\%, outperforming a previously published method's accuracy of 45\%. In addition, the agreement between the predicted scores of our method and the visual scores was good, where the previous method obtained only moderate agreement. Our approach employs a regression training strategy to generate categorical labels while simultaneously producing high-resolution localized activation maps for visualizing the network predictions. By leveraging these dense activation maps, our method possesses the capability to compute the percentage of emphysema involvement per lung in addition to categorical severity scores. Furthermore, the proposed method extends its predictive capabilities beyond centrilobular emphysema to include paraseptal emphysema subtypes.
A skeletonization algorithm for gradient-based optimization
Authors: Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer, Suprosanna Shit, Ivan Ezhov, Robbie Holland, Monika Probst, Julia A. Schnabel, Daniel Rueckert
Date: 2023-09-05 00:00:00
Proceeding: ICCV 2023 1
Tasks: Benchmarking, Deep Learning, Image Description

The skeleton of a digital image is a compact representation of its topology, geometry, and scale. It has utility in many computer vision applications, such as image description, segmentation, and registration. However, skeletonization has only seen limited use in contemporary deep learning solutions. Most existing skeletonization algorithms are not differentiable, making it impossible to integrate them with gradient-based optimization. Compatible algorithms based on morphological operations and neural networks have been proposed, but their results often deviate from the geometry and topology of the true medial axis. This work introduces the first three-dimensional skeletonization algorithm that is both compatible with gradient-based optimization and preserves an object's topology. Our method is exclusively based on matrix additions and multiplications, convolutional operations, basic non-linear functions, and sampling from a uniform probability distribution, allowing it to be easily implemented in any major deep learning library. In benchmarking experiments, we prove the advantages of our skeletonization algorithm compared to non-differentiable, morphological, and neural-network-based baselines. Finally, we demonstrate the utility of our algorithm by integrating it with two medical image processing applications that use gradient-based optimization: deep-learning-based blood vessel segmentation, and multimodal registration of the mandible in computed tomography and magnetic resonance images.
GO-SLAM: Global Optimization for Consistent 3D Instant Reconstruction
Authors: Youmin Zhang, Fabio Tosi, Stefano Mattoccia, Matteo Poggi
Date: 2023-09-05 00:00:00
Proceeding: ICCV 2023 1
Tasks: 3D Reconstruction, global-optimization, Pose Estimation, Simultaneous Localization and Mapping

Neural implicit representations have recently demonstrated compelling results on dense Simultaneous Localization And Mapping (SLAM) but suffer from the accumulation of errors in camera tracking and distortion in the reconstruction. Purposely, we present GO-SLAM, a deep-learning-based dense visual SLAM framework globally optimizing poses and 3D reconstruction in real-time. Robust pose estimation is at its core, supported by efficient loop closing and online full bundle adjustment, which optimize per frame by utilizing the learned global geometry of the complete history of input frames. Simultaneously, we update the implicit and continuous surface representation on-the-fly to ensure global consistency of 3D reconstruction. Results on various synthetic and real-world datasets demonstrate that GO-SLAM outperforms state-of-the-art approaches at tracking robustness and reconstruction accuracy. Furthermore, GO-SLAM is versatile and can run with monocular, stereo, and RGB-D input.
EgoPCA: A New Framework for Egocentric Hand-Object Interaction Understanding
Authors: Yue Xu, Yong-Lu Li, Zhemin Huang, Michael Xu Liu, Cewu Lu, Yu-Wing Tai, Chi-Keung Tang
Date: 2023-09-05 00:00:00
Proceeding: ICCV 2023 1
Tasks: Action Recognition, Temporal Action Localization

With the surge in attention to Egocentric Hand-Object Interaction (Ego-HOI), large-scale datasets such as Ego4D and EPIC-KITCHENS have been proposed. However, most current research is built on resources derived from third-person video action recognition. This inherent domain gap between first- and third-person action videos, which have not been adequately addressed before, makes current Ego-HOI suboptimal. This paper rethinks and proposes a new framework as an infrastructure to advance Ego-HOI recognition by Probing, Curation and Adaption (EgoPCA). We contribute comprehensive pre-train sets, balanced test sets and a new baseline, which are complete with a training-finetuning strategy. With our new framework, we not only achieve state-of-the-art performance on Ego-HOI benchmarks but also build several new and effective mechanisms and settings to advance further research. We believe our data and the findings will pave a new way for Ego-HOI understanding. Code and data are available at https://mvig-rhos.com/ego_pca
Voice Morphing: Two Identities in One Voice
Authors: Sushanta K. Pani, Anurag Chowdhury, Morgan Sandler, Arun Ross
Date: 2023-09-05 00:00:00
Tasks: MORPH, Speaker Recognition

In a biometric system, each biometric sample or template is typically associated with a single identity. However, recent research has demonstrated the possibility of generating "morph" biometric samples that can successfully match more than a single identity. Morph attacks are now recognized as a potential security threat to biometric systems. However, most morph attacks have been studied on biometric modalities operating in the image domain, such as face, fingerprint, and iris. In this preliminary work, we introduce Voice Identity Morphing (VIM) - a voice-based morph attack that can synthesize speech samples that impersonate the voice characteristics of a pair of individuals. Our experiments evaluate the vulnerabilities of two popular speaker recognition systems, ECAPA-TDNN and x-vector, to VIM, with a success rate (MMPMR) of over 80% at a false match rate of 1% on the Librispeech dataset.
Prototype-based Dataset Comparison
Authors: Nanne van Noord
Date: 2023-09-05 00:00:00
Tasks: Self-Supervised Learning

Dataset summarisation is a fruitful approach to dataset inspection. However, when applied to a single dataset the discovery of visual concepts is restricted to those most prominent. We argue that a comparative approach can expand upon this paradigm to enable richer forms of dataset inspection that go beyond the most prominent concepts. To enable dataset comparison we present a module that learns concept-level prototypes across datasets. We leverage self-supervised learning to discover these prototypes without supervision, and we demonstrate the benefits of our approach in two case-studies. Our findings show that dataset comparison extends dataset inspection and we hope to encourage more works in this direction. Code and usage instructions available at https://github.com/Nanne/ProtoSim
Local Padding in Patch-Based GANs for Seamless Infinite-Sized Texture Synthesis
Authors: Alhasan Abdellatif, Ahmed H. Elsheikh, Hannah P. Menke
Date: 2023-09-05 00:00:00
Tasks: Diversity, GPU, Super-Resolution, Texture Synthesis

Texture models based on Generative Adversarial Networks (GANs) use zero-padding to implicitly encode positional information of the image features. However, when extending the spatial input to generate images at large sizes, zero-padding can often lead to degradation in image quality due to the incorrect positional information at the center of the image. Moreover, zero-padding can limit the diversity within the generated large images. In this paper, we propose a novel approach for generating stochastic texture images at large arbitrary sizes using GANs based on patch-by-patch generation. Instead of zero-padding, the model uses \textit{local padding} in the generator that shares border features between the generated patches; providing positional context and ensuring consistency at the boundaries. The proposed models are trainable on a single texture image and have a constant GPU scalability with respect to the output image size, and hence can generate images of infinite sizes. We show in the experiments that our method has a significant advancement beyond existing GANs-based texture models in terms of the quality and diversity of the generated textures. Furthermore, the implementation of local padding in the state-of-the-art super-resolution models effectively eliminates tiling artifacts enabling large-scale super-resolution. Our code is available at \url{https://github.com/ai4netzero/Infinite_Texture_GANs}.
DEEPBEAS3D: Deep Learning and B-Spline Explicit Active Surfaces
Authors: Helena Williams, João Pedrosa, Muhammad Asad, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge
Date: 2023-09-05 00:00:00
Tasks: Deep Learning, Interactive Segmentation, Segmentation

Deep learning-based automatic segmentation methods have become state-of-the-art. However, they are often not robust enough for direct clinical application, as domain shifts between training and testing data affect their performance. Failure in automatic segmentation can cause sub-optimal results that require correction. To address these problems, we propose a novel 3D extension of an interactive segmentation framework that represents a segmentation from a convolutional neural network (CNN) as a B-spline explicit active surface (BEAS). BEAS ensures segmentations are smooth in 3D space, increasing anatomical plausibility, while allowing the user to precisely edit the 3D surface. We apply this framework to the task of 3D segmentation of the anal sphincter complex (AS) from transperineal ultrasound (TPUS) images, and compare it to the clinical tool used in the pelvic floor disorder clinic (4D View VOCAL, GE Healthcare; Zipf, Austria). Experimental results show that: 1) the proposed framework gives the user explicit control of the surface contour; 2) the perceived workload calculated via the NASA-TLX index was reduced by 30% compared to VOCAL; and 3) it required 7 0% (170 seconds) less user time than VOCAL (p< 0.00001)
TiAVox: Time-aware Attenuation Voxels for Sparse-view 4D DSA Reconstruction
Authors: Zhenghong Zhou, Huangxuan Zhao, Jiemin Fang, Dongqiao Xiang, Lei Chen, Lingxia Wu, Feihong Wu, Wenyu Liu, Chuansheng Zheng, Xinggang Wang
Date: 2023-09-05 00:00:00
Tasks: 3D Reconstruction, Novel View Synthesis

Four-dimensional Digital Subtraction Angiography (4D DSA) plays a critical role in the diagnosis of many medical diseases, such as Arteriovenous Malformations (AVM) and Arteriovenous Fistulas (AVF). Despite its significant application value, the reconstruction of 4D DSA demands numerous views to effectively model the intricate vessels and radiocontrast flow, thereby implying a significant radiation dose. To address this high radiation issue, we propose a Time-aware Attenuation Voxel (TiAVox) approach for sparse-view 4D DSA reconstruction, which paves the way for high-quality 4D imaging. Additionally, 2D and 3D DSA imaging results can be generated from the reconstructed 4D DSA images. TiAVox introduces 4D attenuation voxel grids, which reflect attenuation properties from both spatial and temporal dimensions. It is optimized by minimizing discrepancies between the rendered images and sparse 2D DSA images. Without any neural network involved, TiAVox enjoys specific physical interpretability. The parameters of each learnable voxel represent the attenuation coefficients. We validated the TiAVox approach on both clinical and simulated datasets, achieving a 31.23 Peak Signal-to-Noise Ratio (PSNR) for novel view synthesis using only 30 views on the clinically sourced dataset, whereas traditional Feldkamp-Davis-Kress methods required 133 views. Similarly, with merely 10 views from the synthetic dataset, TiAVox yielded a PSNR of 34.32 for novel view synthesis and 41.40 for 3D reconstruction. We also executed ablation studies to corroborate the essential components of TiAVox. The code will be publically available.
ATM: Action Temporality Modeling for Video Question Answering
Authors: Junwen Chen, Jie Zhu, Yu Kong
Date: 2023-09-05 00:00:00
Tasks: Contrastive Learning, Optical Flow Estimation, Question Answering, Video Question Answering

Despite significant progress in video question answering (VideoQA), existing methods fall short of questions that require causal/temporal reasoning across frames. This can be attributed to imprecise motion representations. We introduce Action Temporality Modeling (ATM) for temporality reasoning via three-fold uniqueness: (1) rethinking the optical flow and realizing that optical flow is effective in capturing the long horizon temporality reasoning; (2) training the visual-text embedding by contrastive learning in an action-centric manner, leading to better action representations in both vision and text modalities; and (3) preventing the model from answering the question given the shuffled video in the fine-tuning stage, to avoid spurious correlation between appearance and motion and hence ensure faithful temporality reasoning. In the experiments, we show that ATM outperforms previous approaches in terms of the accuracy on multiple VideoQAs and exhibits better true temporality reasoning ability.
Haystack: A Panoptic Scene Graph Dataset to Evaluate Rare Predicate Classes
Authors: Julian Lorenz, Florian Barthel, Daniel Kienzle, Rainer Lienhart
Date: 2023-09-05 00:00:00
Tasks: Graph Generation, Scene Graph Generation

Current scene graph datasets suffer from strong long-tail distributions of their predicate classes. Due to a very low number of some predicate classes in the test sets, no reliable metrics can be retrieved for the rarest classes. We construct a new panoptic scene graph dataset and a set of metrics that are designed as a benchmark for the predictive performance especially on rare predicate classes. To construct the new dataset, we propose a model-assisted annotation pipeline that efficiently finds rare predicate classes that are hidden in a large set of images like needles in a haystack. Contrary to prior scene graph datasets, Haystack contains explicit negative annotations, i.e. annotations that a given relation does not have a certain predicate class. Negative annotations are helpful especially in the field of scene graph generation and open up a whole new set of possibilities to improve current scene graph generation models. Haystack is 100% compatible with existing panoptic scene graph datasets and can easily be integrated with existing evaluation pipelines. Our dataset and code can be found here: https://lorjul.github.io/haystack/. It includes annotation files and simple to use scripts and utilities, to help with integrating our dataset in existing work.
Augmenting Chest X-ray Datasets with Non-Expert Annotations
Authors: Veronika Cheplygina, Cathrine Damgaard, Trine Naja Eriksen, Dovile Juodelyte, Amelia Jiménez-Sánchez
Date: 2023-09-05 00:00:00
Tasks: Diagnostic, Medical Image Analysis

The advancement of machine learning algorithms in medical image analysis requires the expansion of training datasets. A popular and cost-effective approach is automated annotation extraction from free-text medical reports, primarily due to the high costs associated with expert clinicians annotating medical images, such as chest X-rays. However, it has been shown that the resulting datasets are susceptible to biases and shortcuts. Another strategy to increase the size of a dataset is crowdsourcing, a widely adopted practice in general computer vision with some success in medical image analysis. In a similar vein to crowdsourcing, we enhance two publicly available chest X-ray datasets by incorporating non-expert annotations. However, instead of using diagnostic labels, we annotate shortcuts in the form of tubes. We collect 3.5k chest drain annotations for NIH-CXR14, and 1k annotations for four different tube types in PadChest, and create the Non-Expert Annotations of Tubes in X-rays (NEATX) dataset. We train a chest drain detector with the non-expert annotations that generalizes well to expert labels. Moreover, we compare our annotations to those provided by experts and show "moderate" to "almost perfect" agreement. Finally, we present a pathology agreement study to raise awareness about the quality of ground truth annotations. We make our dataset available on Zenodo at https://zenodo.org/records/14944064 and our code available at https://github.com/purrlab/chestxr-label-reliability.
Advanced Underwater Image Restoration in Complex Illumination Conditions
Authors: YiFan Song, Mengkun She, Kevin Köser
Date: 2023-09-05 00:00:00
Tasks: Image Restoration, Underwater Image Restoration

Underwater image restoration has been a challenging problem for decades since the advent of underwater photography. Most solutions focus on shallow water scenarios, where the scene is uniformly illuminated by the sunlight. However, the vast majority of uncharted underwater terrain is located beyond 200 meters depth where natural light is scarce and artificial illumination is needed. In such cases, light sources co-moving with the camera, dynamically change the scene appearance, which make shallow water restoration methods inadequate. In particular for multi-light source systems (composed of dozens of LEDs nowadays), calibrating each light is time-consuming, error-prone and tedious, and we observe that only the integrated illumination within the viewing volume of the camera is critical, rather than the individual light sources. The key idea of this paper is therefore to exploit the appearance changes of objects or the seafloor, when traversing the viewing frustum of the camera. Through new constraints assuming Lambertian surfaces, corresponding image pixels constrain the light field in front of the camera, and for each voxel a signal factor and a backscatter value are stored in a volumetric grid that can be used for very efficient image restoration of camera-light platforms, which facilitates consistently texturing large 3D models and maps that would otherwise be dominated by lighting and medium artifacts. To validate the effectiveness of our approach, we conducted extensive experiments on simulated and real-world datasets. The results of these experiments demonstrate the robustness of our approach in restoring the true albedo of objects, while mitigating the influence of lighting and medium effects. Furthermore, we demonstrate our approach can be readily extended to other scenarios, including in-air imaging with artificial illumination or other similar cases.
Continual Cross-Dataset Adaptation in Road Surface Classification
Authors: Paolo Cudrano, Matteo Bellusci, Giuseppe Macino, Matteo Matteucci
Date: 2023-09-05 00:00:00
Tasks: Autonomous Vehicles, Classification, Continual Learning

Accurate road surface classification is crucial for autonomous vehicles (AVs) to optimize driving conditions, enhance safety, and enable advanced road mapping. However, deep learning models for road surface classification suffer from poor generalization when tested on unseen datasets. To update these models with new information, also the original training dataset must be taken into account, in order to avoid catastrophic forgetting. This is, however, inefficient if not impossible, e.g., when the data is collected in streams or large amounts. To overcome this limitation and enable fast and efficient cross-dataset adaptation, we propose to employ continual learning finetuning methods designed to retain past knowledge while adapting to new data, thus effectively avoiding forgetting. Experimental results demonstrate the superiority of this approach over naive finetuning, achieving performance close to fresh retraining. While solving this known problem, we also provide a general description of how the same technique can be adopted in other AV scenarios. We highlight the potential computational and economic benefits that a continual-based adaptation can bring to the AV industry, while also reducing greenhouse emissions due to unnecessary joint retraining.
High-resolution 3D Maps of Left Atrial Displacements using an Unsupervised Image Registration Neural Network
Authors: Christoforos Galazis, Anil Anthony Bharath, Marta Varela
Date: 2023-09-05 00:00:00
Tasks: Image Registration, Prognosis, Unsupervised Image Registration

Functional analysis of the left atrium (LA) plays an increasingly important role in the prognosis and diagnosis of cardiovascular diseases. Echocardiography-based measurements of LA dimensions and strains are useful biomarkers, but they provide an incomplete picture of atrial deformations. High-resolution dynamic magnetic resonance images (Cine MRI) offer the opportunity to examine LA motion and deformation in 3D, at higher spatial resolution and with full LA coverage. However, there are no dedicated tools to automatically characterise LA motion in 3D. Thus, we propose a tool that automatically segments the LA and extracts the displacement fields across the cardiac cycle. The pipeline is able to accurately track the LA wall across the cardiac cycle with an average Hausdorff distance of $2.51 \pm 1.3~mm$ and Dice score of $0.96 \pm 0.02$.