pwc-archive/papers-with-abstracts huggingface dataset:
Syntactic Knowledge via Graph Attention with BERT in Machine Translation
Authors: Yuqian Dai, Serge Sharoff, Marc de Kamps
Date: 2023-05-22 00:00:00
Tasks: Graph Attention, Machine Translation, Text Generation, Translation

Although the Transformer model can effectively acquire context features via a self-attention mechanism, deeper syntactic knowledge is still not effectively modeled. To alleviate the above problem, we propose Syntactic knowledge via Graph attention with BERT (SGB) in Machine Translation (MT) scenarios. Graph Attention Network (GAT) and BERT jointly represent syntactic dependency feature as explicit knowledge of the source language to enrich source language representations and guide target language generation. Our experiments use gold syntax-annotation sentences and Quality Estimation (QE) model to obtain interpretability of translation quality improvement regarding syntactic knowledge without being limited to a BLEU score. Experiments show that the proposed SGB engines improve translation quality across the three MT tasks without sacrificing BLEU scores. We investigate what length of source sentences benefits the most and what dependencies are better identified by the SGB engines. We also find that learning of specific dependency relations by GAT can be reflected in the translation quality containing such relations and that syntax on the graph leads to new modeling of syntactic aspects of source sentences in the middle and bottom layers of BERT.
Element-aware Summarization with Large Language Models: Expert-aligned Evaluation and Chain-of-Thought Method
Authors: Yiming Wang, Zhuosheng Zhang, Rui Wang
Date: 2023-05-22 00:00:00
Tasks: Benchmarking, Hallucination

Automatic summarization generates concise summaries that contain key ideas of source documents. As the most mainstream datasets for the news sub-domain, CNN/DailyMail and BBC XSum have been widely used for performance benchmarking. However, the reference summaries of those datasets turn out to be noisy, mainly in terms of factual hallucination and information redundancy. To address this challenge, we first annotate new expert-writing Element-aware test sets following the "Lasswell Communication Model" proposed by Lasswell (1948), allowing reference summaries to focus on more fine-grained news elements objectively and comprehensively. Utilizing the new test sets, we observe the surprising zero-shot summary ability of LLMs, which addresses the issue of the inconsistent results between human preference and automatic evaluation metrics of LLMs' zero-shot summaries in prior work. Further, we propose a Summary Chain-of-Thought (SumCoT) technique to elicit LLMs to generate summaries step by step, which helps them integrate more fine-grained details of source documents into the final summaries that correlate with the human writing mindset. Experimental results show our method outperforms state-of-the-art fine-tuned PLMs and zero-shot LLMs by +4.33/+4.77 in ROUGE-L on the two datasets, respectively. Dataset and code are publicly available at https://github.com/Alsace08/SumCoT.
DADA: Dialect Adaptation via Dynamic Aggregation of Linguistic Rules
Authors: Yanchen Liu, William Held, Diyi Yang
Date: 2023-05-22 00:00:00
Tasks: Dialect Identification

Existing large language models (LLMs) that mainly focus on Standard American English (SAE) often lead to significantly worse performance when being applied to other English dialects. While existing mitigations tackle discrepancies for individual target dialects, they assume access to high-accuracy dialect identification systems. The boundaries between dialects are inherently flexible, making it difficult to categorize language into discrete predefined categories. In this paper, we propose DADA (Dialect Adaptation via Dynamic Aggregation), a modular approach to imbue SAE-trained models with multi-dialectal robustness by composing adapters which handle specific linguistic features. The compositional architecture of DADA allows for both targeted adaptation to specific dialect variants and simultaneous adaptation to various dialects. We show that DADA is effective for both single task and instruction finetuned language models, offering an extensible and interpretable framework for adapting existing LLMs to different English dialects.
GATology for Linguistics: What Syntactic Dependencies It Knows
Authors: Yuqian Dai, Serge Sharoff, Marc de Kamps
Date: 2023-05-22 00:00:00
Tasks: Graph Attention, Graph Neural Network, Machine Translation, Relation Prediction

Graph Attention Network (GAT) is a graph neural network which is one of the strategies for modeling and representing explicit syntactic knowledge and can work with pre-trained models, such as BERT, in downstream tasks. Currently, there is still a lack of investigation into how GAT learns syntactic knowledge from the perspective of model structure. As one of the strategies for modeling explicit syntactic knowledge, GAT and BERT have never been applied and discussed in Machine Translation (MT) scenarios. We design a dependency relation prediction task to study how GAT learns syntactic knowledge of three languages as a function of the number of attention heads and layers. We also use a paired t-test and F1-score to clarify the differences in syntactic dependency prediction between GAT and BERT fine-tuned by the MT task (MT-B). The experiments show that better performance can be achieved by appropriately increasing the number of attention heads with two GAT layers. With more than two layers, learning suffers. Moreover, GAT is more competitive in training speed and syntactic dependency prediction than MT-B, which may reveal a better incorporation of modeling explicit syntactic knowledge and the possibility of combining GAT and BERT in the MT tasks.
A study of conceptual language similarity: comparison and evaluation
Authors: Haotian Ye, Yihong Liu, Hinrich Schütze
Date: 2023-05-22 00:00:00
Tasks: Binary Classification, Diversity

An interesting line of research in natural language processing (NLP) aims to incorporate linguistic typology to bridge linguistic diversity and assist the research of low-resource languages. While most works construct linguistic similarity measures based on lexical or typological features, such as word order and verbal inflection, recent work has introduced a novel approach to defining language similarity based on how they represent basic concepts, which is complementary to existing similarity measures. In this work, we study the conceptual similarity in detail and evaluate it extensively on a binary classification task.
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance
Authors: Karel D'Oosterlinck, François Remy, Johannes Deleu, Thomas Demeester, Chris Develder, Klim Zaporojets, Aneiss Ghodsi, Simon Ellershaw, Jack Collins, Christopher Potts
Date: 2023-05-22 00:00:00
Tasks: Event Extraction, Pharmacovigilance

Timely and accurate extraction of Adverse Drug Events (ADE) from biomedical literature is paramount for public safety, but involves slow and costly manual labor. We set out to improve drug safety monitoring (pharmacovigilance, PV) through the use of Natural Language Processing (NLP). We introduce BioDEX, a large-scale resource for Biomedical adverse Drug Event Extraction, rooted in the historical output of drug safety reporting in the U.S. BioDEX consists of 65k abstracts and 19k full-text biomedical papers with 256k associated document-level safety reports created by medical experts. The core features of these reports include the reported weight, age, and biological sex of a patient, a set of drugs taken by the patient, the drug dosages, the reactions experienced, and whether the reaction was life threatening. In this work, we consider the task of predicting the core information of the report given its originating paper. We estimate human performance to be 72.0% F1, whereas our best model achieves 62.3% F1, indicating significant headroom on this task. We also begin to explore ways in which these models could help professional PV reviewers. Our code and data are available: https://github.com/KarelDO/BioDEX.
The neural dynamics of auditory word recognition and integration
Authors: Jon Gauthier, Roger Levy
Date: 2023-05-22 00:00:00
Tasks: EEG

Listeners recognize and integrate words in rapid and noisy everyday speech by combining expectations about upcoming content with incremental sensory evidence. We present a computational model of word recognition which formalizes this perceptual process in Bayesian decision theory. We fit this model to explain scalp EEG signals recorded as subjects passively listened to a fictional story, revealing both the dynamics of the online auditory word recognition process and the neural correlates of the recognition and integration of words. The model reveals distinct neural processing of words depending on whether or not they can be quickly recognized. While all words trigger a neural response characteristic of probabilistic integration -- voltage modulations predicted by a word's surprisal in context -- these modulations are amplified for words which require more than roughly 150 ms of input to be recognized. We observe no difference in the latency of these neural responses according to words' recognition times. Our results are consistent with a two-part model of speech comprehension, combining an eager and rapid process of word recognition with a temporally independent process of word integration. However, we also developed alternative models of the scalp EEG signal not incorporating word recognition dynamics which showed similar performance improvements. We discuss potential future modeling steps which may help to separate these hypotheses.
Can LLMs facilitate interpretation of pre-trained language models?
Authors: Basel Mousi, Nadir Durrani, Fahim Dalvi
Date: 2023-05-22 00:00:00
Tasks: Language Modeling, Language Modelling, Large Language Model

Work done to uncover the knowledge encoded within pre-trained language models rely on annotated corpora or human-in-the-loop methods. However, these approaches are limited in terms of scalability and the scope of interpretation. We propose using a large language model, ChatGPT, as an annotator to enable fine-grained interpretation analysis of pre-trained language models. We discover latent concepts within pre-trained language models by applying agglomerative hierarchical clustering over contextualized representations and then annotate these concepts using ChatGPT. Our findings demonstrate that ChatGPT produces accurate and semantically richer annotations compared to human-annotated concepts. Additionally, we showcase how GPT-based annotations empower interpretation analysis methodologies of which we demonstrate two: probing frameworks and neuron interpretation. To facilitate further exploration and experimentation in the field, we make available a substantial ConceptNet dataset (TCN) comprising 39,000 annotated concepts.
Improving Stability and Performance of Spiking Neural Networks through Enhancing Temporal Consistency
Authors: Dongcheng Zhao, Guobin Shen, Yiting Dong, Yang Li, Yi Zeng
Date: 2023-05-23 00:00:00

Spiking neural networks have gained significant attention due to their brain-like information processing capabilities. The use of surrogate gradients has made it possible to train spiking neural networks with backpropagation, leading to impressive performance in various tasks. However, spiking neural networks trained with backpropagation typically approximate actual labels using the average output, often necessitating a larger simulation timestep to enhance the network's performance. This delay constraint poses a challenge to the further advancement of SNNs. Current training algorithms tend to overlook the differences in output distribution at various timesteps. Particularly for neuromorphic datasets, inputs at different timesteps can cause inconsistencies in output distribution, leading to a significant deviation from the optimal direction when combining optimization directions from different moments. To tackle this issue, we have designed a method to enhance the temporal consistency of outputs at different timesteps. We have conducted experiments on static datasets such as CIFAR10, CIFAR100, and ImageNet. The results demonstrate that our algorithm can achieve comparable performance to other optimal SNN algorithms. Notably, our algorithm has achieved state-of-the-art performance on neuromorphic datasets DVS-CIFAR10 and N-Caltech101, and can achieve superior performance in the test phase with timestep T=1.
Toward stochastic neural computing
Authors: Yang Qi, Zhichao Zhu, Yiming Wei, Lu Cao, Zhigang Wang, Jie Zhang, Wenlian Lu, Jianfeng Feng
Date: 2023-05-23 00:00:00

The highly irregular spiking activity of cortical neurons and behavioral variability suggest that the brain could operate in a fundamentally probabilistic way. Mimicking how the brain implements and learns probabilistic computation could be a key to developing machine intelligence that can think more like humans. In this work, we propose a theory of stochastic neural computing (SNC) in which streams of noisy inputs are transformed and processed through populations of nonlinearly coupled spiking neurons. To account for the propagation of correlated neural variability, we derive from first principles a moment embedding for spiking neural network (SNN). This leads to a new class of deep learning model called the moment neural network (MNN) which naturally generalizes rate-based neural networks to second order. As the MNN faithfully captures the stationary statistics of spiking neural activity, it can serve as a powerful proxy for training SNN with zero free parameters. Through joint manipulation of mean firing rate and noise correlations in a task-driven way, the model is able to learn inference tasks while simultaneously minimizing prediction uncertainty, resulting in enhanced inference speed. We further demonstrate the application of our method to Intel's Loihi neuromorphic hardware. The proposed theory of SNC may open up new opportunities for developing machine intelligence capable of computing uncertainty and for designing unconventional computing architectures.
Implementation of Lenia as a Reaction-Diffusion System
Authors: Hiroki Kojima, Takashi Ikegami
Date: 2023-05-23 00:00:00

The relationship between reaction-diffusion (RD) systems, characterized by continuous spatiotemporal states, and cellular automata (CA), marked by discrete spatiotemporal states, remains poorly understood. This paper delves into this relationship through an examination of a recently developed CA known as Lenia. We demonstrate that asymptotic Lenia, a variant of Lenia, can be comprehensively described by differential equations, and, unlike the original Lenia, it is independent of time-step ticks. Further, we establish that this formulation is mathematically equivalent to a generalization of the kernel-based Turing model (KT model). Stemming from these insights, we establish that asymptotic Lenia can be replicated by an RD system composed solely of diffusion and spatially local reaction terms, resulting in the simulated asymptotic Lenia based on an RD system, or "RD Lenia". However, our RD Lenia cannot be construed as a chemical system since the reaction term fails to satisfy mass-action kinetics.
Understanding and Improving Optimization in Predictive Coding Networks
Authors: Nick Alonso, Jeff Krichmar, Emre Neftci
Date: 2023-05-23 00:00:00

Backpropagation (BP), the standard learning algorithm for artificial neural networks, is often considered biologically implausible. In contrast, the standard learning algorithm for predictive coding (PC) models in neuroscience, known as the inference learning algorithm (IL), is a promising, bio-plausible alternative. However, several challenges and questions hinder IL's application to real-world problems. For example, IL is computationally demanding, and without memory-intensive optimizers like Adam, IL may converge to poor local minima. Moreover, although IL can reduce loss more quickly than BP, the reasons for these speedups or their robustness remains unclear. In this paper, we tackle these challenges by 1) altering the standard implementation of PC circuits to substantially reduce computation, 2) developing a novel optimizer that improves the convergence of IL without increasing memory usage, and 3) establishing theoretical results that help elucidate the conditions under which IL is sensitive to second and higher-order information.
Evaluation of the MACE Force Field Architecture: from Medicinal Chemistry to Materials Science
Authors: David Peter Kovacs, Ilyes Batatia, Eszter Sara Arany, Gabor Csanyi
Date: 2023-05-23 00:00:00

The MACE architecture represents the state of the art in the field of machine learning force fields for a variety of in-domain, extrapolation and low-data regime tasks. In this paper, we further evaluate MACE by fitting models for published benchmark datasets. We show that MACE generally outperforms alternatives for a wide range of systems from amorphous carbon, universal materials modelling, and general small molecule organic chemistry to large molecules and liquid water. We demonstrate the capabilities of the model on tasks ranging from constrained geometry optimisation to molecular dynamics simulations and find excellent performance across all tested domains. We show that MACE is very data efficient, and can reproduce experimental molecular vibrational spectra when trained on as few as 50 randomly selected reference configurations. We further demonstrate that the strictly local atom-centered model is sufficient for such tasks even in the case of large molecules and weakly interacting molecular assemblies.
Goodness of fit by Neyman-Pearson testing
Authors: Gaia Grosso, Marco Letizia, Maurizio Pierini, Andrea Wulzer
Date: 2023-05-23 00:00:00

The Neyman-Pearson strategy for hypothesis testing can be employed for goodness of fit if the alternative hypothesis is selected from data by exploring a rich parametrised family of models, while controlling the impact of statistical fluctuations. The New Physics Learning Machine (NPLM) methodology has been developed as a concrete implementation of this idea, to target the detection of new physical effects in the context of high energy physics collider experiments. In this paper we conduct a comparison of this approach to goodness of fit with others, in particular with classifier-based strategies that share strong similarities with NPLM. From our comparison, NPLM emerges as the more sensitive test to small departures of the data from the expected distribution and not biased towards detecting specific types of anomalies. These features make it suited for agnostic searches for new physics at collider experiments. Its deployment in other scientific and industrial scenarios should be investigated.
Stochastic PDE representation of random fields for large-scale Gaussian process regression and statistical finite element analysis
Authors: Kim Jie Koh, Fehmi Cirak
Date: 2023-05-23 00:00:00
Tasks: regression

The efficient representation of random fields on geometrically complex domains is crucial for Bayesian modelling in engineering and machine learning. Today's prevalent random field representations are either intended for unbounded domains or are too restrictive in terms of possible field properties. Because of these limitations, techniques leveraging the historically established link between stochastic PDEs (SPDEs) and random fields have been gaining interest. The SPDE representation is especially appealing for engineering applications which already have a finite element discretisation for solving the physical conservation equations. In contrast to the dense covariance matrix of a random field, its inverse, the precision matrix, is usually sparse and equal to the stiffness matrix of an elliptic SPDE. We use the SPDE representation to develop a scalable framework for large-scale statistical finite element analysis and Gaussian process (GP) regression on complex geometries. The statistical finite element method (statFEM) introduced by Girolami et al. (2022) is a novel approach for synthesising measurement data and finite element models. In both statFEM and GP regression, we use the SPDE formulation to obtain the relevant prior probability densities with a sparse precision matrix. The properties of the priors are governed by the parameters and possibly fractional order of the SPDE so that we can model on bounded domains and manifolds anisotropic, non-stationary random fields with arbitrary smoothness. The observation models for statFEM and GP regression are such that the posterior probability densities are Gaussians with a closed-form mean and precision. The respective mean vector and precision matrix and can be evaluated using only sparse matrix operations. We demonstrate the versatility of the proposed framework and its convergence properties with Poisson and thin-shell examples.
Nonparanormal Graph Quilting with Applications to Calcium Imaging
Authors: Andersen Chang, Lili Zheng, Gautam Dasarthy, Genevera I. Allen
Date: 2023-05-22 00:00:00
Tasks: Functional Connectivity

Probabilistic graphical models have become an important unsupervised learning tool for detecting network structures for a variety of problems, including the estimation of functional neuronal connectivity from two-photon calcium imaging data. However, in the context of calcium imaging, technological limitations only allow for partially overlapping layers of neurons in a brain region of interest to be jointly recorded. In this case, graph estimation for the full data requires inference for edge selection when many pairs of neurons have no simultaneous observations. This leads to the Graph Quilting problem, which seeks to estimate a graph in the presence of block-missingness in the empirical covariance matrix. Solutions for the Graph Quilting problem have previously been studied for Gaussian graphical models; however, neural activity data from calcium imaging are often non-Gaussian, thereby requiring a more flexible modeling approach. Thus, in our work, we study two approaches for nonparanormal Graph Quilting based on the Gaussian copula graphical model, namely a maximum likelihood procedure and a low-rank based framework. We provide theoretical guarantees on edge recovery for the former approach under similar conditions to those previously developed for the Gaussian setting, and we investigate the empirical performance of both methods using simulations as well as real data calcium imaging data. Our approaches yield more scientifically meaningful functional connectivity estimates compared to existing Gaussian graph quilting methods for this calcium imaging data set.
When the Music Stops: Tip-of-the-Tongue Retrieval for Music
Authors: Samarth Bhargav, Anne Schuth, Claudia Hauff
Date: 2023-05-23 00:00:00
Tasks: Benchmarking, Language Modeling, Language Modelling, Large Language Model, Retrieval, Text Retrieval

We present a study of Tip-of-the-tongue (ToT) retrieval for music, where a searcher is trying to find an existing music entity, but is unable to succeed as they cannot accurately recall important identifying information. ToT information needs are characterized by complexity, verbosity, uncertainty, and possible false memories. We make four contributions. (1) We collect a dataset - $ToT_{Music}$ - of 2,278 information needs and ground truth answers. (2) We introduce a schema for these information needs and show that they often involve multiple modalities encompassing several Music IR subtasks such as lyric search, audio-based search, audio fingerprinting, and text search. (3) We underscore the difficulty of this task by benchmarking a standard text retrieval approach on this dataset. (4) We investigate the efficacy of query reformulations generated by a large language model (LLM), and show that they are not as effective as simply employing the entire information need as a query - leaving several open questions for future research.