pwc-archive/papers-with-abstracts huggingface dataset:
Computing with Residue Numbers in High-Dimensional Representation
Authors: Christopher J. Kymn, Denis Kleyko, E. Paxon Frady, Connor Bybee, Pentti Kanerva, Friedrich T. Sommer, Bruno A. Olshausen
Date: 2023-11-08 00:00:00
Tasks: Combinatorial Optimization

We introduce Residue Hyperdimensional Computing, a computing framework that unifies residue number systems with an algebra defined over random, high-dimensional vectors. We show how residue numbers can be represented as high-dimensional vectors in a manner that allows algebraic operations to be performed with component-wise, parallelizable operations on the vector elements. The resulting framework, when combined with an efficient method for factorizing high-dimensional vectors, can represent and operate on numerical values over a large dynamic range using vastly fewer resources than previous methods, and it exhibits impressive robustness to noise. We demonstrate the potential for this framework to solve computationally difficult problems in visual perception and combinatorial optimization, showing improvement over baseline methods. More broadly, the framework provides a possible account for the computational operations of grid cells in the brain, and it suggests new machine learning architectures for representing and manipulating numerical data.
Algorithms for Non-Negative Matrix Factorization on Noisy Data With Negative Values
Authors: Dylan Green, Stephen Bailey
Date: 2023-11-08 00:00:00
Tasks: Dimensionality Reduction

Non-negative matrix factorization (NMF) is a dimensionality reduction technique that has shown promise for analyzing noisy data, especially astronomical data. For these datasets, the observed data may contain negative values due to noise even when the true underlying physical signal is strictly positive. Prior NMF work has not treated negative data in a statistically consistent manner, which becomes problematic for low signal-to-noise data with many negative values. In this paper we present two algorithms, Shift-NMF and Nearly-NMF, that can handle both the noisiness of the input data and also any introduced negativity. Both of these algorithms use the negative data space without clipping, and correctly recover non-negative signals without any introduced positive offset that occurs when clipping negative data. We demonstrate this numerically on both simple and more realistic examples, and prove that both algorithms have monotonically decreasing update rules.
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1
Authors: Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer
Date: 2023-11-08 00:00:00

Motivation: In predicting HIV therapy outcomes, a critical clinical question is whether using historical information can enhance predictive capabilities compared with current or latest available data analysis. This study analyses whether historical knowledge, which includes viral mutations detected in all genotypic tests before therapy, their temporal occurrence, and concomitant viral load measurements, can bring improvements. We introduce a method to weigh mutations, considering the previously enumerated factors and the reference mutation-drug Stanford resistance tables. We compare a model encompassing history (H) with one not using it (NH). Results: The H-model demonstrates superior discriminative ability, with a higher ROC-AUC score (76.34%) than the NH-model (74.98%). Significant Wilcoxon test results confirm that incorporating historical information improves consistently predictive accuracy for treatment outcomes. The better performance of the H-model might be attributed to its consideration of latent HIV reservoirs, probably obtained when leveraging historical information. The findings emphasize the importance of temporal dynamics in mutations, offering insights into HIV infection complexities. However, our result also shows that prediction accuracy remains relatively high even when no historical information is available. Supplementary information: Supplementary material is available.
Bridging Dimensions: Confident Reachability for High-Dimensional Controllers
Authors: Yuang Geng, Jake Brandon Baldauf, Souradeep Dutta, Chao Huang, Ivan Ruchkin
Date: 2023-11-08 00:00:00
Tasks: Knowledge Distillation, OpenAI Gym

Autonomous systems are increasingly implemented using end-to-end learning-based controllers. Such controllers make decisions that are executed on the real system, with images as one of the primary sensing modalities. Deep neural networks form a fundamental building block of such controllers. Unfortunately, the existing neural-network verification tools do not scale to inputs with thousands of dimensions -- especially when the individual inputs (such as pixels) are devoid of clear physical meaning. This paper takes a step towards connecting exhaustive closed-loop verification with high-dimensional controllers. Our key insight is that the behavior of a high-dimensional controller can be approximated with several low-dimensional controllers. To balance the approximation accuracy and verifiability of our low-dimensional controllers, we leverage the latest verification-aware knowledge distillation. Then, we inflate low-dimensional reachability results with statistical approximation errors, yielding a high-confidence reachability guarantee for the high-dimensional controller. We investigate two inflation techniques -- based on trajectories and control actions -- both of which show convincing performance in three OpenAI gym benchmarks.
Toward Rapid, Optimal, and Feasible Power Dispatch through Generalized Neural Mapping
Authors: Meiyi Li, Javad Mohammadi
Date: 2023-11-08 00:00:00
Tasks: Decision Making

The evolution towards a more distributed and interconnected grid necessitates large-scale decision-making within strict temporal constraints. Machine learning (ML) paradigms have demonstrated significant potential in improving the efficacy of optimization processes. However, the feasibility of solutions derived from ML models continues to pose challenges. It's imperative that ML models produce solutions that are attainable and realistic within the given system constraints of power systems. To address the feasibility issue and expedite the solution search process, we proposed LOOP-LC 2.0(Learning to Optimize the Optimization Process with Linear Constraints version 2.0) as a learning-based approach for solving the power dispatch problem. A notable advantage of the LOOP-LC 2.0 framework is its ability to ensure near-optimality and strict feasibility of solutions without depending on computationally intensive post-processing procedures, thus eliminating the need for iterative processes. At the heart of the LOOP-LC 2.0 model lies the newly proposed generalized gauge map method, capable of mapping any infeasible solution to a feasible point within the linearly-constrained domain. The proposed generalized gauge map method improves the traditional gauge map by exhibiting reduced sensitivity to input variances while increasing search speeds significantly. Utilizing the IEEE-200 test case as a benchmark, we demonstrate the effectiveness of the LOOP-LC 2.0 methodology, confirming its superior performance in terms of training speed, computational time, optimality, and solution feasibility compared to existing methodologies.
Real-Time Recurrent Reinforcement Learning
Authors: Julian Lemmel, Radu Grosu
Date: 2023-11-08 00:00:00
Tasks: continuous-control, Continuous Control, Partially Observable Reinforcement Learning, reinforcement-learning, Reinforcement Learning

We introduce a biologically plausible RL framework for solving tasks in partially observable Markov decision processes (POMDPs). The proposed algorithm combines three integral parts: (1) A Meta-RL architecture, resembling the mammalian basal ganglia; (2) A biologically plausible reinforcement learning algorithm, exploiting temporal difference learning and eligibility traces to train the policy and the value-function; (3) An online automatic differentiation algorithm for computing the gradients with respect to parameters of a shared recurrent network backbone. Our experimental results show that the method is capable of solving a diverse set of partially observable reinforcement learning tasks. The algorithm we call real-time recurrent reinforcement learning (RTRRL) serves as a model of learning in biological neural networks, mimicking reward pathways in the basal ganglia.
Functional Bayesian Tucker Decomposition for Continuous-indexed Tensor Data
Authors: Shikai Fang, Xin Yu, Zheng Wang, Shibo Li, Mike Kirby, Shandian Zhe
Date: 2023-11-08 00:00:00
Tasks: Gaussian Processes

Tucker decomposition is a powerful tensor model to handle multi-aspect data. It demonstrates the low-rank property by decomposing the grid-structured data as interactions between a core tensor and a set of object representations (factors). A fundamental assumption of such decomposition is that there are finite objects in each aspect or mode, corresponding to discrete indexes of data entries. However, real-world data is often not naturally posed in this setting. For example, geographic data is represented as continuous indexes of latitude and longitude coordinates, and cannot fit tensor models directly. To generalize Tucker decomposition to such scenarios, we propose Functional Bayesian Tucker Decomposition (FunBaT). We treat the continuous-indexed data as the interaction between the Tucker core and a group of latent functions. We use Gaussian processes (GP) as functional priors to model the latent functions. Then, we convert each GP into a state-space prior by constructing an equivalent stochastic differential equation (SDE) to reduce computational cost. An efficient inference algorithm is developed for scalable posterior approximation based on advanced message-passing techniques. The advantage of our method is shown in both synthetic data and several real-world applications. We release the code of FunBaT at \url{https://github.com/xuangu-fang/Functional-Bayesian-Tucker-Decomposition}.
A Lightweight Architecture for Real-Time Neuronal-Spike Classification
Authors: Muhammad Ali Siddiqi, David Vrijenhoek, Lennart P. L. Landsmeer, Job van der Kleij, Anteneh Gebregiorgis, Vincenzo Romano, Rajendra Bishnoi, Said Hamdioui, Christos Strydis
Date: 2023-11-08 00:00:00

Electrophysiological recordings of neural activity in a mouse's brain are very popular among neuroscientists for understanding brain function. One particular area of interest is acquiring recordings from the Purkinje cells in the cerebellum in order to understand brain injuries and the loss of motor functions. However, current setups for such experiments do not allow the mouse to move freely and, thus, do not capture its natural behaviour since they have a wired connection between the animal's head stage and an acquisition device. In this work, we propose a lightweight neuronal-spike detection and classification architecture that leverages on the unique characteristics of the Purkinje cells to discard unneeded information from the sparse neural data in real time. This allows the (condensed) data to be easily stored on a removable storage device on the head stage, alleviating the need for wires. Synthesis results reveal a >95% overall classification accuracy while still resulting in a small-form-factor design, which allows for the free movement of mice during experiments. Moreover, the power-efficient nature of the design and the usage of STT-RAM (Spin Transfer Torque Magnetic Random Access Memory) as the removable storage allows the head stage to easily operate on a tiny battery for up to approximately 4 days.
The PetShop Dataset -- Finding Causes of Performance Issues across Microservices
Authors: Michaela Hardt, William R. Orchard, Patrick Blöbaum, Shiva Kasiviswanathan, Elke Kirschbaum
Date: 2023-11-08 00:00:00
Tasks: Benchmarking

Identifying root causes for unexpected or undesirable behavior in complex systems is a prevalent challenge. This issue becomes especially crucial in modern cloud applications that employ numerous microservices. Although the machine learning and systems research communities have proposed various techniques to tackle this problem, there is currently a lack of standardized datasets for quantitative benchmarking. Consequently, research groups are compelled to create their own datasets for experimentation. This paper introduces a dataset specifically designed for evaluating root cause analyses in microservice-based applications. The dataset encompasses latency, requests, and availability metrics emitted in 5-minute intervals from a distributed application. In addition to normal operation metrics, the dataset includes 68 injected performance issues, which increase latency and reduce availability throughout the system. We showcase how this dataset can be used to evaluate the accuracy of a variety of methods spanning different causal and non-causal characterisations of the root cause analysis problem. We hope the new dataset, available at https://github.com/amazon-science/petshop-root-cause-analysis/ enables further development of techniques in this important area.
Determination of toxic comments and unintended model bias minimization using Deep learning approach
Authors: Md Azim Khan
Date: 2023-11-08 00:00:00
Tasks: regression

Online conversations can be toxic and subjected to threats, abuse, or harassment. To identify toxic text comments, several deep learning and machine learning models have been proposed throughout the years. However, recent studies demonstrate that because of the imbalances in the training data, some models are more likely to show unintended biases including gender bias and identity bias. In this research, our aim is to detect toxic comment and reduce the unintended bias concerning identity features such as race, gender, sex, religion by fine-tuning an attention based model called BERT(Bidirectional Encoder Representation from Transformers). We apply weighted loss to address the issue of unbalanced data and compare the performance of a fine-tuned BERT model with a traditional Logistic Regression model in terms of classification and bias minimization. The Logistic Regression model with the TFIDF vectorizer achieve 57.1% accuracy, and fine-tuned BERT model's accuracy is 89%. Code is available at https://github.com/zim10/Determine_Toxic_comment_and_identity_bias.git
Why Do Probabilistic Clinical Models Fail To Transport Between Sites?
Authors: Thomas A. Lasko, Eric V. Strobl, William W. Stead
Date: 2023-11-08 00:00:00

The rising popularity of artificial intelligence in healthcare is highlighting the problem that a computational model achieving super-human clinical performance at its training sites may perform substantially worse at new sites. In this perspective, we present common sources for this failure to transport, which we divide into sources under the control of the experimenter and sources inherent to the clinical data-generating process. Of the inherent sources we look a little deeper into site-specific clinical practices that can affect the data distribution, and propose a potential solution intended to isolate the imprint of those practices on the data from the patterns of disease cause and effect that are the usual target of probabilistic clinical models.
FetMRQC: a robust quality control system for multi-centric fetal brain MRI
Authors: Thomas Sanchez, Oscar Esteban, Yvan Gomez, Alexandre Pron, Mériam Koob, Vincent Dunet, Nadine Girard, Andras Jakab, Elisenda Eixarch, Guillaume Auzias, Meritxell Bach Cuadra
Date: 2023-11-08 00:00:00
Tasks: Image Quality Assessment

Fetal brain MRI is becoming an increasingly relevant complement to neurosonography for perinatal diagnosis, allowing fundamental insights into fetal brain development throughout gestation. However, uncontrolled fetal motion and heterogeneity in acquisition protocols lead to data of variable quality, potentially biasing the outcome of subsequent studies. We present FetMRQC, an open-source machine-learning framework for automated image quality assessment and quality control that is robust to domain shifts induced by the heterogeneity of clinical data. FetMRQC extracts an ensemble of quality metrics from unprocessed anatomical MRI and combines them to predict experts' ratings using random forests. We validate our framework on a pioneeringly large and diverse dataset of more than 1600 manually rated fetal brain T2-weighted images from four clinical centers and 13 different scanners. Our study shows that FetMRQC's predictions generalize well to unseen data while being interpretable. FetMRQC is a step towards more robust fetal brain neuroimaging, which has the potential to shed new insights on the developing human brain.
Optimal Deep Neural Network Approximation for Korobov Functions with respect to Sobolev Norms
Authors: Yahong Yang, Yulong Lu
Date: 2023-11-08 00:00:00

This paper establishes the nearly optimal rate of approximation for deep neural networks (DNNs) when applied to Korobov functions, effectively overcoming the curse of dimensionality. The approximation results presented in this paper are measured with respect to $L_p$ norms and $H^1$ norms. Our achieved approximation rate demonstrates a remarkable "super-convergence" rate, outperforming traditional methods and any continuous function approximator. These results are non-asymptotic, providing error bounds that consider both the width and depth of the networks simultaneously.
Towards a Unified Framework of Contrastive Learning for Disentangled Representations
Date: 2023-11-08 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Contrastive Learning, Disentanglement

Contrastive learning has recently emerged as a promising approach for learning data representations that discover and disentangle the explanatory factors of the data. Previous analyses of such approaches have largely focused on individual contrastive losses, such as noise-contrastive estimation (NCE) and InfoNCE, and rely on specific assumptions about the data generating process. This paper extends the theoretical guarantees for disentanglement to a broader family of contrastive methods, while also relaxing the assumptions about the data distribution. Specifically, we prove identifiability of the true latents for four contrastive losses studied in this paper, without imposing common independence assumptions. The theoretical findings are validated on several benchmark datasets. Finally, practical limitations of these methods are also investigated.
Towards Open-world Cross-Domain Sequential Recommendation: A Model-Agnostic Contrastive Denoising Approach
Authors: Wujiang Xu, Xuying Ning, Wenfang Lin, Mingming Ha, Qiongxu Ma, Qianqiao Liang, Xuewen Tao, Linxun Chen, Bing Han, Minnan Luo
Date: 2023-11-08 00:00:00
Tasks: Denoising, Recommendation Systems, Sequential Recommendation

Cross-domain sequential recommendation (CDSR) aims to address the data sparsity problems that exist in traditional sequential recommendation (SR) systems. The existing approaches aim to design a specific cross-domain unit that can transfer and propagate information across multiple domains by relying on overlapping users with abundant behaviors. However, in real-world recommender systems, CDSR scenarios usually consist of a majority of long-tailed users with sparse behaviors and cold-start users who only exist in one domain. This leads to a drop in the performance of existing CDSR methods in the real-world industry platform. Therefore, improving the consistency and effectiveness of models in open-world CDSR scenarios is crucial for constructing CDSR models (\textit{1st} CH). Recently, some SR approaches have utilized auxiliary behaviors to complement the information for long-tailed users. However, these multi-behavior SR methods cannot deliver promising performance in CDSR, as they overlook the semantic gap between target and auxiliary behaviors, as well as user interest deviation across domains (\textit{2nd} CH).
Intrinsic Bayesian Cramér-Rao Bound with an Application to Covariance Matrix Estimation
Authors: Florent Bouchard, Alexandre Renaux, Guillaume Ginolhac, Arnaud Breloy
Date: 2023-11-08 00:00:00

This paper presents a new performance bound for estimation problems where the parameter to estimate lies in a Riemannian manifold (a smooth manifold endowed with a Riemannian metric) and follows a given prior distribution. In this setup, the chosen Riemannian metric induces a geometry for the parameter manifold, as well as an intrinsic notion of the estimation error measure. Performance bound for such error measure were previously obtained in the non-Bayesian case (when the unknown parameter is assumed to deterministic), and referred to as \textit{intrinsic} Cram\'er-Rao bound. The presented result then appears either as: \textit{a}) an extension of the intrinsic Cram\'er-Rao bound to the Bayesian estimation framework; \textit{b}) a generalization of the Van-Trees inequality (Bayesian Cram\'er-Rao bound) that accounts for the aforementioned geometric structures. In a second part, we leverage this formalism to study the problem of covariance matrix estimation when the data follow a Gaussian distribution, and whose covariance matrix is drawn from an inverse Wishart distribution. Performance bounds for this problem are obtained for both the mean squared error (Euclidean metric) and the natural Riemannian distance for Hermitian positive definite matrices (affine invariant metric). Numerical simulation illustrate that assessing the error with the affine invariant metric is revealing of interesting properties of the maximum a posteriori and minimum mean square error estimator, which are not observed when using the Euclidean metric.
Enhancing Multi-Agent Coordination through Common Operating Picture Integration
Authors: Peihong Yu, Bhoram Lee, Aswin Raghavan, Supun Samarasekara, Pratap Tokekar, James Zachary Hare
Date: 2023-11-08 00:00:00
Tasks: Multi-agent Reinforcement Learning

In multi-agent systems, agents possess only local observations of the environment. Communication between teammates becomes crucial for enhancing coordination. Past research has primarily focused on encoding local information into embedding messages which are unintelligible to humans. We find that using these messages in agent's policy learning leads to brittle policies when tested on out-of-distribution initial states. We present an approach to multi-agent coordination, where each agent is equipped with the capability to integrate its (history of) observations, actions and messages received into a Common Operating Picture (COP) and disseminate the COP. This process takes into account the dynamic nature of the environment and the shared mission. We conducted experiments in the StarCraft2 environment to validate our approach. Our results demonstrate the efficacy of COP integration, and show that COP-based training leads to robust policies compared to state-of-the-art Multi-Agent Reinforcement Learning (MARL) methods when faced with out-of-distribution initial states.