pwc-archive/papers-with-abstracts huggingface dataset:
Two-Stage Aggregation with Dynamic Local Attention for Irregular Time Series
Authors: Xingyu Chen, Xiaochen Zheng, Amina Mollaysa, Manuel Schürch, Ahmed Allam, Michael Krauthammer
Date: 2023-11-13 00:00:00
Tasks: Irregular Time Series, Time Series

Irregular multivariate time series data is characterized by varying time intervals between consecutive observations of measured variables/signals (i.e., features) and varying sampling rates (i.e., recordings/measurement) across these features. Modeling time series while taking into account these irregularities is still a challenging task for machine learning methods. Here, we introduce TADA, a Two-stageAggregation process with Dynamic local Attention to harmonize time-wise and feature-wise irregularities in multivariate time series. In the first stage, the irregular time series undergoes temporal embedding (TE) using all available features at each time step. This process preserves the contribution of each available feature and generates a fixed-dimensional representation per time step. The second stage introduces a dynamic local attention (DLA) mechanism with adaptive window sizes. DLA aggregates time recordings using feature-specific windows to harmonize irregular time intervals capturing feature-specific sampling rates. Then hierarchical MLP mixer layers process the output of DLA through multiscale patching to leverage information at various scales for the downstream tasks. TADA outperforms state-of-the-art methods on three real-world datasets, including the latest MIMIC IV dataset, and highlights its effectiveness in handling irregular multivariate time series and its potential for various real-world applications.
A Simple Quantum Blockmodeling with Qubits and Permutations
Authors: Ammar Daskin
Date: 2023-11-13 00:00:00

Blockmodeling of a given problem represented by an $N\times N$ adjacency matrix can be found by swapping rows and columns of the matrix (i.e. multiplying matrix from left and right by a permutation matrix). Although classical matrix permutations can be efficiently done by swapping pointers for the permuted rows (or columns) of the matrix, by changing row-column order, a permutation changes the location of the matrix elements, which determines the membership of a group in the matrix based blockmodeling. Therefore, a brute force initial estimation of a fitness value for a candidate solution involving counting the memberships of the elements may require going through all the sum of the rows (or the columns). Similarly permutations can be also implemented efficiently on quantum computers, e.g. a NOT gate on a qubit. In this paper, using permutation matrices and qubit measurements, we show how to solve blockmodeling on quantum computers. In the model, the measurement outcomes of a small group of qubits are mapped to indicate the fitness value. However, if the number of qubits in the considered group is much less than $n=log(N)$, it is possible to find or update the fitness value based on the state tomography in $O(poly(log(N)))$. Therefore, when the number of iterations is less than $log(N)$ time and the size of the considered qubit group is small, we show that it may be possible to reach the solution very efficiently.
Matching aggregate posteriors in the variational autoencoder
Authors: Surojit Saha, Sarang Joshi, Ross Whitaker
Date: 2023-11-13 00:00:00

The variational autoencoder (VAE) is a well-studied, deep, latent-variable model (DLVM) that efficiently optimizes the variational lower bound of the log marginal data likelihood and has a strong theoretical foundation. However, the VAE's known failure to match the aggregate posterior often results in \emph{pockets/holes} in the latent distribution (i.e., a failure to match the prior) and/or \emph{posterior collapse}, which is associated with a loss of information in the latent space. This paper addresses these shortcomings in VAEs by reformulating the objective function associated with VAEs in order to match the aggregate/marginal posterior distribution to the prior. We use kernel density estimate (KDE) to model the aggregate posterior in high dimensions. The proposed method is named the \emph{aggregate variational autoencoder} (AVAE) and is built on the theoretical framework of the VAE. Empirical evaluation of the proposed method on multiple benchmark data sets demonstrates the effectiveness of the AVAE relative to state-of-the-art (SOTA) methods.
Attention-based Multi-task Learning for Base Editor Outcome Prediction
Authors: Amina Mollaysa, Ahmed Allam, Michael Krauthammer
Date: 2023-11-13 00:00:00
Tasks: Multi-Task Learning

Human genetic diseases often arise from point mutations, emphasizing the critical need for precise genome editing techniques. Among these, base editing stands out as it allows targeted alterations at the single nucleotide level. However, its clinical application is hindered by low editing efficiency and unintended mutations, necessitating extensive trial-and-error experimentation in the laboratory. To speed up this process, we present an attention-based two-stage machine learning model that learns to predict the likelihood of all possible editing outcomes for a given genomic target sequence. We further propose a multi-task learning schema to jointly learn multiple base editors (i.e. variants) at once. Our model's predictions consistently demonstrated a strong correlation with the actual experimental results on multiple datasets and base editor variants. These results provide further validation for the models' capacity to enhance and accelerate the process of refining base editing designs.
A Consistent Diffusion-Based Algorithm for Semi-Supervised Graph Learning
Authors: Thomas Bonald, Nathan de Lara
Date: 2023-11-13 00:00:00
Tasks: Graph Learning

The task of semi-supervised classification aims at assigning labels to all nodes of a graph based on the labels known for a few nodes, called the seeds. One of the most popular algorithms relies on the principle of heat diffusion, where the labels of the seeds are spread by thermoconductance and the temperature of each node at equilibrium is used as a score function for each label. In this paper, we prove that this algorithm is not consistent unless the temperatures of the nodes at equilibrium are centered before scoring. This crucial step does not only make the algorithm provably consistent on a block model but brings significant performance gains on real graphs.
Quantum Machine Learning for Remote Sensing: Exploring potential and challenges
Authors: Artur Miroszewski, Jakub Nalepa, Bertrand Le Saux, Jakub Mielczarek
Date: 2023-11-13 00:00:00
Tasks: Quantum Machine Learning

The industry of quantum technologies is rapidly expanding, offering promising opportunities for various scientific domains. Among these emerging technologies, Quantum Machine Learning (QML) has attracted considerable attention due to its potential to revolutionize data processing and analysis. In this paper, we investigate the application of QML in the field of remote sensing. It is believed that QML can provide valuable insights for analysis of data from space. We delve into the common beliefs surrounding the quantum advantage in QML for remote sensing and highlight the open challenges that need to be addressed. To shed light on the challenges, we conduct a study focused on the problem of kernel value concentration, a phenomenon that adversely affects the runtime of quantum computers. Our findings indicate that while this issue negatively impacts quantum computer performance, it does not entirely negate the potential quantum advantage in QML for remote sensing.
Activity Sparsity Complements Weight Sparsity for Efficient RNN Inference
Authors: Rishav Mukherji, Mark Schöne, Khaleelulla Khan Nazeer, Christian Mayr, Anand Subramoney
Date: 2023-11-13 00:00:00
Tasks: Deep Learning, Language Modeling, Language Modelling

Artificial neural networks open up unprecedented machine learning capabilities at the cost of ever growing computational requirements. Sparsifying the parameters, often achieved through weight pruning, has been identified as a powerful technique to compress the number of model parameters and reduce the computational operations of neural networks. Yet, sparse activations, while omnipresent in both biological neural networks and deep learning systems, have not been fully utilized as a compression technique in deep learning. Moreover, the interaction between sparse activations and weight pruning is not fully understood. In this work, we demonstrate that activity sparsity can compose multiplicatively with parameter sparsity in a recurrent neural network model based on the GRU that is designed to be activity sparse. We achieve up to $20\times$ reduction of computation while maintaining perplexities below $60$ on the Penn Treebank language modeling task. This magnitude of reduction has not been achieved previously with solely sparsely connected LSTMs, and the language modeling performance of our model has not been achieved previously with any sparsely activated recurrent neural networks or spiking neural networks. Neuromorphic computing devices are especially good at taking advantage of the dynamic activity sparsity, and our results provide strong evidence that making deep learning models activity sparse and porting them to neuromorphic devices can be a viable strategy that does not compromise on task performance. Our results also drive further convergence of methods from deep learning and neuromorphic computing for efficient machine learning.
To Transformers and Beyond: Large Language Models for the Genome
Authors: Micaela E. Consens, Cameron Dufault, Michael Wainberg, Duncan Forster, Mehran Karimzadeh, Hani Goodarzi, Fabian J. Theis, Alan Moses, Bo wang
Date: 2023-11-13 00:00:00

In the rapidly evolving landscape of genomics, deep learning has emerged as a useful tool for tackling complex computational challenges. This review focuses on the transformative role of Large Language Models (LLMs), which are mostly based on the transformer architecture, in genomics. Building on the foundation of traditional convolutional neural networks and recurrent neural networks, we explore both the strengths and limitations of transformers and other LLMs for genomics. Additionally, we contemplate the future of genomic modeling beyond the transformer architecture based on current trends in research. The paper aims to serve as a guide for computational biologists and computer scientists interested in LLMs for genomic data. We hope the paper can also serve as an educational introduction and discussion for biologists to a fundamental shift in how we will be analyzing genomic data in the future.
EPIM: Efficient Processing-In-Memory Accelerators based on Epitome
Authors: Chenyu Wang, Zhen Dong, Daquan Zhou, Zhenhua Zhu, Yu Wang, Jiashi Feng, Kurt Keutzer
Date: 2023-11-12 00:00:00
Tasks: Model Compression, Neural Architecture Search, Quantization

The utilization of large-scale neural networks on Processing-In-Memory (PIM) accelerators encounters challenges due to constrained on-chip memory capacity. To tackle this issue, current works explore model compression algorithms to reduce the size of Convolutional Neural Networks (CNNs). Most of these algorithms either aim to represent neural operators with reduced-size parameters (e.g., quantization) or search for the best combinations of neural operators (e.g., neural architecture search). Designing neural operators to align with PIM accelerators' specifications is an area that warrants further study. In this paper, we introduce the Epitome, a lightweight neural operator offering convolution-like functionality, to craft memory-efficient CNN operators for PIM accelerators (EPIM). On the software side, we evaluate epitomes' latency and energy on PIM accelerators and introduce a PIM-aware layer-wise design method to enhance their hardware efficiency. We apply epitome-aware quantization to further reduce the size of epitomes. On the hardware side, we modify the datapath of current PIM accelerators to accommodate epitomes and implement a feature map reuse technique to reduce computation cost. Experimental results reveal that our 3-bit quantized EPIM-ResNet50 attains 71.59% top-1 accuracy on ImageNet, reducing crossbar areas by 30.65 times. EPIM surpasses the state-of-the-art pruning methods on PIM.
Application of a Dense Fusion Attention Network in Fault Diagnosis of Centrifugal Fan
Authors: Ruijun Wang, YuAn Liu, Zhixia Fan, Xiaogang Xu, Huijie Wang
Date: 2023-11-12 00:00:00
Tasks: Diagnostic, Fault Diagnosis

Although the deep learning recognition model has been widely used in the condition monitoring of rotating machinery. However, it is still a challenge to understand the correspondence between the structure and function of the model and the diagnosis process. Therefore, this paper discusses embedding distributed attention modules into dense connections instead of traditional dense cascading operations. It not only decouples the influence of space and channel on fault feature adaptive recalibration feature weights, but also forms a fusion attention function. The proposed dense fusion focuses on the visualization of the network diagnosis process, which increases the interpretability of model diagnosis. How to continuously and effectively integrate different functions to enhance the ability to extract fault features and the ability to resist noise is answered. Centrifugal fan fault data is used to verify this network. Experimental results show that the network has stronger diagnostic performance than other advanced fault diagnostic models.
A Physics-informed Machine Learning-based Control Method for Nonlinear Dynamic Systems with Highly Noisy Measurements
Authors: Mason Ma, Jiajie Wu, Chase Post, Tony Shi, Jingang Yi, Tony Schmitz, Hong Wang
Date: 2023-11-12 00:00:00
Tasks: Model Predictive Control, Physics-informed machine learning

This study presents a physics-informed machine learning-based control method for nonlinear dynamic systems with highly noisy measurements. Existing data-driven control methods that use machine learning for system identification cannot effectively cope with highly noisy measurements, resulting in unstable control performance. To address this challenge, the present study extends current physics-informed machine learning capabilities for modeling nonlinear dynamics with control and integrates them into a model predictive control framework. To demonstrate the capability of the proposed method we test and validate with two noisy nonlinear dynamic systems: the chaotic Lorenz 3 system, and turning machine tool. Analysis of the results illustrate that the proposed method outperforms state-of-the-art benchmarks as measured by both modeling accuracy and control performance for nonlinear dynamic systems under high-noise conditions.
Retrieve and Copy: Scaling ASR Personalization to Large Catalogs
Authors: Sai Muralidhar Jayanthi, Devang Kulshreshtha, Saket Dingliwal, Srikanth Ronanki, Sravan Bodapati
Date: 2023-11-14 00:00:00
Tasks: Automatic Speech Recognition, Automatic Speech Recognition (ASR), speech-recognition, Speech Recognition

Personalization of automatic speech recognition (ASR) models is a widely studied topic because of its many practical applications. Most recently, attention-based contextual biasing techniques are used to improve the recognition of rare words and domain specific entities. However, due to performance constraints, the biasing is often limited to a few thousand entities, restricting real-world usability. To address this, we first propose a "Retrieve and Copy" mechanism to improve latency while retaining the accuracy even when scaled to a large catalog. We also propose a training strategy to overcome the degradation in recall at such scale due to an increased number of confusing entities. Overall, our approach achieves up to 6% more Word Error Rate reduction (WERR) and 3.6% absolute improvement in F1 when compared to a strong baseline. Our method also allows for large catalog sizes of up to 20K without significantly affecting WER and F1-scores, while achieving at least 20% inference speedup per acoustic frame.
A Material Lens on Coloniality in NLP
Authors: William Held, Camille Harris, Michael Best, Diyi Yang
Date: 2023-11-14 00:00:00

Coloniality, the continuation of colonial harms beyond "official" colonization, has pervasive effects across society and scientific fields. Natural Language Processing (NLP) is no exception to this broad phenomenon. In this work, we argue that coloniality is implicitly embedded in and amplified by NLP data, algorithms, and software. We formalize this analysis using Actor-Network Theory (ANT): an approach to understanding social phenomena through the network of relationships between human stakeholders and technology. We use our Actor-Network to guide a quantitative survey of the geography of different phases of NLP research, providing evidence that inequality along colonial boundaries increases as NLP builds on itself. Based on this, we argue that combating coloniality in NLP requires not only changing current values but also active work to remove the accumulation of colonial ideals in our foundational data and algorithms.
Predicting Text Preference Via Structured Comparative Reasoning
Authors: Jing Nathan Yan, Tianqi Liu, Justin T Chiu, Jiaming Shen, Zhen Qin, Yue Yu, Yao Zhao, Charu Lakshmanan, Yair Kurzion, Alexander M. Rush, Jialu Liu, Michael Bendersky
Date: 2023-11-14 00:00:00
Tasks: Hallucination, Retrieval

Comparative reasoning plays a crucial role in text preference prediction; however, large language models (LLMs) often demonstrate inconsistencies in their reasoning. While approaches like Chain-of-Thought improve accuracy in many other settings, they struggle to consistently distinguish the similarities and differences of complex texts. We introduce SC, a prompting approach that predicts text preferences by generating structured intermediate comparisons. SC begins by proposing aspects of comparison, followed by generating textual comparisons under each aspect. We select consistent comparisons with a pairwise consistency comparator that ensures each aspect's comparisons clearly distinguish differences between texts, significantly reducing hallucination and improving consistency. Our comprehensive evaluations across various NLP tasks, including summarization, retrieval, and automatic rating, demonstrate that SC equips LLMs to achieve state-of-the-art performance in text preference prediction.
Aligning Large Language Models with Human Opinions through Persona Selection and Value--Belief--Norm Reasoning
Authors: Do Xuan Long, Kenji Kawaguchi, Min-Yen Kan, Nancy F. Chen
Date: 2023-11-14 00:00:00

Reasoning and predicting human opinions with large language models (LLMs) is essential yet challenging. Current methods employ role-playing with personae but face two major issues: LLMs are sensitive to even a single irrelevant persona, skewing predictions by up to 30%, and LLMs fail to reason strategically over personae. We propose Chain-of-Opinion (COO), a simple four-step solution modeling which and how to reason with personae, inspired by the Value--Belief--Norm (VBN) theory. COO differentiates between explicit personae (demographics and ideology) and implicit personae (historical opinions), involves: (1) filtering irrelevant attributes from explicit personae, (2) ranking implicit personae into a preferential list for selecting top-k, (3) applying novel VBN reasoning to extract user environmental and personal value, belief, and norm variables for accurate and reliable predictions, and (4) iterating VBN reasoning with progressively larger lists of implicit personae to handle potential persona insufficiency. COO efficiently achieves new state-of-the-art opinion prediction via prompting with only 5 inference calls, improving prior techniques by up to 4%. Notably, fine-tuning LMs with COO data results in significantly better opinion-aligned models, by up to 23%.
Direct Preference Optimization for Neural Machine Translation with Minimum Bayes Risk Decoding
Authors: Guangyu Yang, Jinghong Chen, Weizhe Lin, Bill Byrne
Date: 2023-11-14 00:00:00
Tasks: Machine Translation, NMT, reinforcement-learning, Reinforcement Learning, Reinforcement Learning (RL), Translation

Minimum Bayes Risk (MBR) decoding can significantly improve translation performance of Multilingual Large Language Models (MLLMs). However, MBR decoding is computationally expensive. We show how the recently developed Reinforcement Learning technique, Direct Preference Optimization (DPO), can fine-tune MLLMs to get the gains of MBR without any additional computation in inference. Our method uses only a small monolingual fine-tuning set and yields significantly improved performance on multiple NMT test sets compared to MLLMs without DPO.
A Ship of Theseus: Curious Cases of Paraphrasing in LLM-Generated Texts
Authors: Nafis Irtiza Tripto, Saranya Venkatraman, Dominik Macko, Robert Moro, Ivan Srba, Adaku Uchendu, Thai Le, Dongwon Lee
Date: 2023-11-14 00:00:00
Tasks: text-classification, Text Classification

In the realm of text manipulation and linguistic transformation, the question of authorship has been a subject of fascination and philosophical inquiry. Much like the Ship of Theseus paradox, which ponders whether a ship remains the same when each of its original planks is replaced, our research delves into an intriguing question: Does a text retain its original authorship when it undergoes numerous paraphrasing iterations? Specifically, since Large Language Models (LLMs) have demonstrated remarkable proficiency in both the generation of original content and the modification of human-authored texts, a pivotal question emerges concerning the determination of authorship in instances where LLMs or similar paraphrasing tools are employed to rephrase the text--i.e., whether authorship should be attributed to the original human author or the AI-powered tool. Therefore, we embark on a philosophical voyage through the seas of language and authorship to unravel this intricate puzzle. Using a computational approach, we discover that the diminishing performance in text classification models, with each successive paraphrasing iteration, is closely associated with the extent of deviation from the original author's style, thus provoking a reconsideration of the current notion of authorship.
SimpleSafetyTests: a Test Suite for Identifying Critical Safety Risks in Large Language Models
Authors: Bertie Vidgen, Nino Scherrer, Hannah Rose Kirk, Rebecca Qian, Anand Kannappan, Scott A. Hale, Paul Röttger
Date: 2023-11-14 00:00:00

The past year has seen rapid acceleration in the development of large language models (LLMs). However, without proper steering and safeguards, LLMs will readily follow malicious instructions, provide unsafe advice, and generate toxic content. We introduce SimpleSafetyTests (SST) as a new test suite for rapidly and systematically identifying such critical safety risks. The test suite comprises 100 test prompts across five harm areas that LLMs, for the vast majority of applications, should refuse to comply with. We test 11 open-access and open-source LLMs and four closed-source LLMs, and find critical safety weaknesses. While some of the models do not give a single unsafe response, most give unsafe responses to more than 20% of the prompts, with over 50% unsafe responses in the extreme. Prepending a safety-emphasising system prompt substantially reduces the occurrence of unsafe responses, but does not completely stop them from happening. Trained annotators labelled every model response to SST (n = 3,000). We use these annotations to evaluate five AI safety filters (which assess whether a models' response is unsafe given a prompt) as a way of automatically evaluating models' performance on SST. The filters' performance varies considerably. There are also differences across the five harm areas, and on the unsafe versus safe responses. The widely-used Perspective API has 72% accuracy and a newly-created zero-shot prompt to OpenAI's GPT-4 performs best with 89% accuracy. Content Warning: This paper contains prompts and responses that relate to child abuse, suicide, self-harm and eating disorders, scams and fraud, illegal items, and physical harm.