pwc-archive/papers-with-abstracts huggingface dataset:
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of Patient Timelines using EHRs
Authors: Zeljko Kraljevic, Dan Bean, Anthony Shek, Rebecca Bendayan, Harry Hemingway, Joshua Au Yeung, Alexander Deng, Alfie Baston, Jack Ross, Esther Idowu, James T Teo, Richard J Dobson
Date: 2022-12-13 00:00:00
Tasks: named-entity-recognition, Named Entity Recognition, Named Entity Recognition (NER), NER

Background: Electronic Health Records hold detailed longitudinal information about each patient's health status and general clinical history, a large portion of which is stored within the unstructured text. Existing approaches focus mostly on structured data and a subset of single-domain outcomes. We explore how temporal modelling of patients from free text and structured data, using deep generative transformers can be used to forecast a wide range of future disorders, substances, procedures or findings. Methods: We present Foresight, a novel transformer-based pipeline that uses named entity recognition and linking tools to convert document text into structured, coded concepts, followed by providing probabilistic forecasts for future medical events such as disorders, substances, procedures and findings. We processed the entire free-text portion from three different hospital datasets totalling 811336 patients covering both physical and mental health. Findings: On tests in two UK hospitals (King's College Hospital, South London and Maudsley) and the US MIMIC-III dataset precision@10 0.68, 0.76 and 0.88 was achieved for forecasting the next disorder in a patient timeline, while precision@10 of 0.80, 0.81 and 0.91 was achieved for forecasting the next biomedical concept. Foresight was also validated on 34 synthetic patient timelines by five clinicians and achieved relevancy of 97% for the top forecasted candidate disorder. As a generative model, it can forecast follow-on biomedical concepts for as many steps as required. Interpretation: Foresight is a general-purpose model for biomedical concept modelling that can be used for real-world risk forecasting, virtual trials and clinical research to study the progression of disorders, simulate interventions and counterfactuals, and educational purposes.
Evaluation of Synthetic Datasets for Conversational Recommender Systems
Authors: Harsh Lara, Manoj Tiwari
Date: 2022-12-12 00:00:00
Tasks: Diversity, Recommendation Systems

For researchers leveraging Large-Language Models (LLMs) in the generation of training datasets, especially for conversational recommender systems - the absence of robust evaluation frameworks has been a long-standing problem. The efficiency brought about by LLMs in the data generation phase is impeded during the process of evaluation of the generated data, since it generally requires human-raters to ensure that the data generated is of high quality and has sufficient diversity. Since the quality of training data is critical for downstream applications, it is important to develop metrics that evaluate the quality holistically and identify biases. In this paper, we present a framework that takes a multi-faceted approach towards evaluating datasets produced by generative models and discuss the advantages and limitations of various evaluation methods.
Moto: Enhancing Embedding with Multiple Joint Factors for Chinese Text Classification
Authors: Xunzhu Tang, Rujie Zhu, Tiezhu Sun, Shi Wang
Date: 2022-12-09 00:00:00
Tasks: text-classification, Text Classification

Recently, language representation techniques have achieved great performances in text classification. However, most existing representation models are specifically designed for English materials, which may fail in Chinese because of the huge difference between these two languages. Actually, few existing methods for Chinese text classification process texts at a single level. However, as a special kind of hieroglyphics, radicals of Chinese characters are good semantic carriers. In addition, Pinyin codes carry the semantic of tones, and Wubi reflects the stroke structure information, \textit{etc}. Unfortunately, previous researches neglected to find an effective way to distill the useful parts of these four factors and to fuse them. In our works, we propose a novel model called Moto: Enhancing Embedding with \textbf{M}ultiple J\textbf{o}int Fac\textbf{to}rs. Specifically, we design an attention mechanism to distill the useful parts by fusing the four-level information above more effectively. We conduct extensive experiments on four popular tasks. The empirical results show that our Moto achieves SOTA 0.8316 ($F_1$-score, 2.11\% improvement) on Chinese news titles, 96.38 (1.24\% improvement) on Fudan Corpus and 0.9633 (3.26\% improvement) on THUCNews.
The Role of AI in Drug Discovery: Challenges, Opportunities, and Strategies
Authors: Alexandre Blanco-Gonzalez, Alfonso Cabezon, Alejandro Seco-Gonzalez, Daniel Conde-Torres, Paula Antelo-Riveiro, Angel Pineiro, Rebeca Garcia-Fandino
Date: 2022-12-08 00:00:00
Tasks: Articles, Chatbot, Data Augmentation, Drug Discovery, Language Modelling

Artificial intelligence (AI) has the potential to revolutionize the drug discovery process, offering improved efficiency, accuracy, and speed. However, the successful application of AI is dependent on the availability of high-quality data, the addressing of ethical concerns, and the recognition of the limitations of AI-based approaches. In this article, the benefits, challenges and drawbacks of AI in this field are reviewed, and possible strategies and approaches for overcoming the present obstacles are proposed. The use of data augmentation, explainable AI, and the integration of AI with traditional experimental methods, as well as the potential advantages of AI in pharmaceutical research are also discussed. Overall, this review highlights the potential of AI in drug discovery and provides insights into the challenges and opportunities for realizing its potential in this field. Note from the human-authors: This article was created to test the ability of ChatGPT, a chatbot based on the GPT-3.5 language model, to assist human authors in writing review articles. The text generated by the AI following our instructions (see Supporting Information) was used as a starting point, and its ability to automatically generate content was evaluated. After conducting a thorough review, human authors practically rewrote the manuscript, striving to maintain a balance between the original proposal and scientific criteria. The advantages and limitations of using AI for this purpose are discussed in the last section.
Routine Outcome Monitoring in Psychotherapy Treatment using Sentiment-Topic Modelling Approach
Authors: Noor Fazilla Abd Yusof, Chenghua Lin
Date: 2022-12-08 00:00:00

Despite the importance of emphasizing the right psychotherapy treatment for an individual patient, assessing the outcome of the therapy session is equally crucial. Evidence showed that continuous monitoring patient's progress can significantly improve the therapy outcomes to an expected change. By monitoring the outcome, the patient's progress can be tracked closely to help clinicians identify patients who are not progressing in the treatment. These monitoring can help the clinician to consider any necessary actions for the patient's treatment as early as possible, e.g., recommend different types of treatment, or adjust the style of approach. Currently, the evaluation system is based on the clinical-rated and self-report questionnaires that measure patients' progress pre- and post-treatment. While outcome monitoring tends to improve the therapy outcomes, however, there are many challenges in the current method, e.g. time and financial burden for administering questionnaires, scoring and analysing the results. Therefore, a computational method for measuring and monitoring patient progress over the course of treatment is needed, in order to enhance the likelihood of positive treatment outcome. Moreover, this computational method could potentially lead to an inexpensive monitoring tool to evaluate patients' progress in clinical care that could be administered by a wider range of health-care professionals.
Attentive Mask CLIP
Authors: Yifan Yang, Weiquan Huang, Yixuan Wei, Houwen Peng, Xinyang Jiang, Huiqiang Jiang, Fangyun Wei, Yin Wang, Han Hu, Lili Qiu, Yuqing Yang
Date: 2022-12-16 00:00:00
Proceeding: ICCV 2023 1
Tasks: Contrastive Learning, Retrieval, zero-shot-classification, Zero-Shot Learning

Image token removal is an efficient augmentation strategy for reducing the cost of computing image features. However, this efficient augmentation strategy has been found to adversely affect the accuracy of CLIP-based training. We hypothesize that removing a large portion of image tokens may improperly discard the semantic content associated with a given text description, thus constituting an incorrect pairing target in CLIP training. To address this issue, we propose an attentive token removal approach for CLIP training, which retains tokens with a high semantic correlation to the text description. The correlation scores are computed in an online fashion using the EMA version of the visual encoder. Our experiments show that the proposed attentive masking approach performs better than the previous method of random token removal for CLIP training. The approach also makes it efficient to apply multiple augmentation views to the image, as well as introducing instance contrastive learning tasks between these views into the CLIP framework. Compared to other CLIP improvements that combine different pre-training targets such as SLIP and MaskCLIP, our method is not only more effective, but also much more efficient. Specifically, using ViT-B and YFCC-15M dataset, our approach achieves $43.9\%$ top-1 accuracy on ImageNet-1K zero-shot classification, as well as $62.7/42.1$ and $38.0/23.2$ I2T/T2I retrieval accuracy on Flickr30K and MS COCO, which are $+1.1\%$, $+5.5/+0.9$, and $+4.4/+1.3$ higher than the SLIP method, while being $2.30\times$ faster. An efficient version of our approach running $1.16\times$ faster than the plain CLIP model achieves significant gains of $+5.3\%$, $+11.3/+8.0$, and $+9.5/+4.9$ on these benchmarks.
ColorSense: A Study on Color Vision in Machine Visual Recognition
Authors: Ming-Chang Chiu, Yingfei Wang, Derrick Eui Gyu Kim, Pin-Yu Chen, Xuezhe Ma
Date: 2022-12-16 00:00:00
Tasks: Data Augmentation, Object Recognition

Color vision is essential for human visual perception, but its impact on machine perception is still underexplored. There has been an intensified demand for understanding its role in machine perception for safety-critical tasks such as assistive driving and surgery but lacking suitable datasets. To fill this gap, we curate multipurpose datasets ColorSense, by collecting 110,000 non-trivial human annotations of foreground and background color labels from popular visual recognition benchmarks. To investigate the impact of color vision on machine perception, we assign each image a color discrimination level based on its dominant foreground and background colors and use it to study the impact of color vision on machine perception. We validate the use of our datasets by demonstrating that the level of color discrimination has a dominating effect on the performance of mainstream machine perception models. Specifically, we examine the perception ability of machine vision by considering key factors such as model architecture, training objective, model size, training data, and task complexity. Furthermore, to investigate how color and environmental factors affect the robustness of visual recognition in machine perception, we integrate our ColorSense datasets with image corruptions and perform a more comprehensive visual perception evaluation. Our findings suggest that object recognition tasks such as classification and localization are susceptible to color vision bias, especially for high-stakes cases such as vehicle classes, and advanced mitigation techniques such as data augmentation and so on only give marginal improvement. Our analyses highlight the need for new approaches toward the performance evaluation of machine perception models in real-world applications. Lastly, we present various potential applications of ColorSense such as studying spurious correlations.
Better May Not Be Fairer: A Study on Subgroup Discrepancy in Image Classification
Authors: Ming-Chang Chiu, Pin-Yu Chen, Xuezhe Ma
Date: 2022-12-16 00:00:00
Proceeding: ICCV 2023 1
Tasks: Data Augmentation, image-classification, Image Classification

In this paper, we provide 20,000 non-trivial human annotations on popular datasets as a first step to bridge gap to studying how natural semantic spurious features affect image classification, as prior works often study datasets mixing low-level features due to limitations in accessing realistic datasets. We investigate how natural background colors play a role as spurious features by annotating the test sets of CIFAR10 and CIFAR100 into subgroups based on the background color of each image. We name our datasets \textbf{CIFAR10-B} and \textbf{CIFAR100-B} and integrate them with CIFAR-Cs. We find that overall human-level accuracy does not guarantee consistent subgroup performances, and the phenomenon remains even on models pre-trained on ImageNet or after data augmentation (DA). To alleviate this issue, we propose \textbf{FlowAug}, a \emph{semantic} DA that leverages decoupled semantic representations captured by a pre-trained generative flow. Experimental results show that FlowAug achieves more consistent subgroup results than other types of DA methods on CIFAR10/100 and on CIFAR10/100-C. Additionally, it shows better generalization performance. Furthermore, we propose a generic metric, \emph{MacroStd}, for studying model robustness to spurious correlations, where we take a macro average on the weighted standard deviations across different classes. We show \textit{MacroStd} being more predictive of better performances; per our metric, FlowAug demonstrates improvements on subgroup discrepancy. Although this metric is proposed to study our curated datasets, it applies to all datasets that have subgroups or subclasses. Lastly, we also show superior out-of-distribution results on CIFAR10.1.
GFPose: Learning 3D Human Pose Prior with Gradient Fields
Authors: Hai Ci, Mingdong Wu, Wentao Zhu, Xiaoxuan Ma, Hao Dong, Fangwei Zhong, Yizhou Wang
Date: 2022-12-16 00:00:00
Proceeding: CVPR 2023 1
Tasks: 3D Human Pose Estimation, Denoising, Monocular 3D Human Pose Estimation, Multi-Hypotheses 3D Human Pose Estimation

Learning 3D human pose prior is essential to human-centered AI. Here, we present GFPose, a versatile framework to model plausible 3D human poses for various applications. At the core of GFPose is a time-dependent score network, which estimates the gradient on each body joint and progressively denoises the perturbed 3D human pose to match a given task specification. During the denoising process, GFPose implicitly incorporates pose priors in gradients and unifies various discriminative and generative tasks in an elegant framework. Despite the simplicity, GFPose demonstrates great potential in several downstream tasks. Our experiments empirically show that 1) as a multi-hypothesis pose estimator, GFPose outperforms existing SOTAs by 20% on Human3.6M dataset. 2) as a single-hypothesis pose estimator, GFPose achieves comparable results to deterministic SOTAs, even with a vanilla backbone. 3) GFPose is able to produce diverse and realistic samples in pose denoising, completion and generation tasks. Project page https://sites.google.com/view/gfpose/
An annotated instance segmentation XXL-CT data-set from a historic airplane
Authors: Roland Gruber, Nils Reims, Andreas Hempfer, Stefan Gerth, Michael Böhnel, Theobald Fuchs, Michael Salamon, Thomas Wittenberg
Date: 2022-12-16 00:00:00
Tasks: Instance Segmentation, Interactive Segmentation, Semantic Segmentation

The Me 163 was a Second World War fighter airplane and a result of the German air force secret developments. One of these airplanes is currently owned and displayed in the historic aircraft exhibition of the Deutsches Museum in Munich, Germany. To gain insights with respect to its history, design and state of preservation, a complete CT scan was obtained using an industrial XXL-computer tomography scanner. Using the CT data from the Me 163, all its details can visually be examined at various levels, ranging from the complete hull down to single sprockets and rivets. However, while a trained human observer can identify and interpret the volumetric data with all its parts and connections, a virtual dissection of the airplane and all its different parts would be quite desirable. Nevertheless, this means, that an instance segmentation of all components and objects of interest into disjoint entities from the CT data is necessary. As of currently, no adequate computer-assisted tools for automated or semi-automated segmentation of such XXL-airplane data are available, in a first step, an interactive data annotation and object labelling process has been established. So far, seven 512 x 512 x 512 voxel sub-volumes from the Me 163 airplane have been annotated and labelled, whose results can potentially be used for various new applications in the field of digital heritage, non-destructive testing, or machine-learning. This work describes the data acquisition process of the airplane using an industrial XXL-CT scanner, outlines the interactive segmentation and labelling scheme to annotate sub-volumes of the airplane's CT data, describes and discusses various challenges with respect to interpreting and handling the annotated and labelled data.
Enhancing Multi-modal and Multi-hop Question Answering via Structured Knowledge and Unified Retrieval-Generation
Authors: Qian Yang, Qian Chen, Wen Wang, Baotian Hu, Min Zhang
Date: 2022-12-16 00:00:00
Tasks: Answer Generation, Decoder, Language Modeling, Language Modelling, Multi-hop Question Answering, Question Answering, Retrieval

Multi-modal multi-hop question answering involves answering a question by reasoning over multiple input sources from different modalities. Existing methods often retrieve evidences separately and then use a language model to generate an answer based on the retrieved evidences, and thus do not adequately connect candidates and are unable to model the interdependent relations during retrieval. Moreover, the pipelined approaches of retrieval and generation might result in poor generation performance when retrieval performance is low. To address these issues, we propose a Structured Knowledge and Unified Retrieval-Generation (SKURG) approach. SKURG employs an Entity-centered Fusion Encoder to align sources from different modalities using shared entities. It then uses a unified Retrieval-Generation Decoder to integrate intermediate retrieval results for answer generation and also adaptively determine the number of retrieval steps. Extensive experiments on two representative multi-modal multi-hop QA datasets MultimodalQA and WebQA demonstrate that SKURG outperforms the state-of-the-art models in both source retrieval and answer generation performance with fewer parameters. Our code is available at https://github.com/HITsz-TMG/SKURG.
Development of A Real-time POCUS Image Quality Assessment and Acquisition Guidance System
Authors: Zhenge Jia, Yiyu Shi, Jingtong Hu, Lei Yang, Benjamin Nti
Date: 2022-12-16 00:00:00
Tasks: Diagnostic, Image Quality Assessment

Point-of-care ultrasound (POCUS) is one of the most commonly applied tools for cardiac function imaging in the clinical routine of the emergency department and pediatric intensive care unit. The prior studies demonstrate that AI-assisted software can guide nurses or novices without prior sonography experience to acquire POCUS by recognizing the interest region, assessing image quality, and providing instructions. However, these AI algorithms cannot simply replace the role of skilled sonographers in acquiring diagnostic-quality POCUS. Unlike chest X-ray, CT, and MRI, which have standardized imaging protocols, POCUS can be acquired with high inter-observer variability. Though being with variability, they are usually all clinically acceptable and interpretable. In challenging clinical environments, sonographers employ novel heuristics to acquire POCUS in complex scenarios. To help novice learners to expedite the training process while reducing the dependency on experienced sonographers in the curriculum implementation, We will develop a framework to perform real-time AI-assisted quality assessment and probe position guidance to provide training process for novice learners with less manual intervention.
Atrous Space Bender U-Net (ASBU-Net/LogiNet)
Authors: Anurag Bansal, Oleg Ostap, Miguel Maestre Trueba, Kristopher Perry
Date: 2022-12-16 00:00:00
Tasks: Quantization, Segmentation, Semantic Segmentation

$ $With recent advances in CNNs, exceptional improvements have been made in semantic segmentation of high resolution images in terms of accuracy and latency. However, challenges still remain in detecting objects in crowded scenes, large scale variations, partial occlusion, and distortions, while still maintaining mobility and latency. We introduce a fast and efficient convolutional neural network, ASBU-Net, for semantic segmentation of high resolution images that addresses these problems and uses no novelty layers for ease of quantization and embedded hardware support. ASBU-Net is based on a new feature extraction module, atrous space bender layer (ASBL), which is efficient in terms of computation and memory. The ASB layers form a building block that is used to make ASBNet. Since this network does not use any special layers it can be easily implemented, quantized and deployed on FPGAs and other hardware with limited memory. We present experiments on resource and accuracy trade-offs and show strong performance compared to other popular models.
Huruf: An Application for Arabic Handwritten Character Recognition Using Deep Learning
Authors: Minhaz Kamal, Fairuz Shaiara, Chowdhury Mohammad Abdullah, Sabbir Ahmed, Tasnim Ahmed, Md. Hasanul Kabir
Date: 2022-12-16 00:00:00
Tasks: Handwriting Recognition

Handwriting Recognition has been a field of great interest in the Artificial Intelligence domain. Due to its broad use cases in real life, research has been conducted widely on it. Prominent work has been done in this field focusing mainly on Latin characters. However, the domain of Arabic handwritten character recognition is still relatively unexplored. The inherent cursive nature of the Arabic characters and variations in writing styles across individuals makes the task even more challenging. We identified some probable reasons behind this and proposed a lightweight Convolutional Neural Network-based architecture for recognizing Arabic characters and digits. The proposed pipeline consists of a total of 18 layers containing four layers each for convolution, pooling, batch normalization, dropout, and finally one Global average pooling and a Dense layer. Furthermore, we thoroughly investigated the different choices of hyperparameters such as the choice of the optimizer, kernel initializer, activation function, etc. Evaluating the proposed architecture on the publicly available 'Arabic Handwritten Character Dataset (AHCD)' and 'Modified Arabic handwritten digits Database (MadBase)' datasets, the proposed model respectively achieved an accuracy of 96.93% and 99.35% which is comparable to the state-of-the-art and makes it a suitable solution for real-life end-level applications.