pwc-archive/papers-with-abstracts huggingface dataset:
Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data
Authors: Manal Helal, Fanrong Kong, Sharon C. A. Chen, Michael Bain, Richard Christen, Vitali Sintchenko
Date: 2023-11-29 00:00:00
Tasks: Clustering, Dimensionality Reduction

The intra- and inter-species genetic diversity of bacteria and the absence of 'reference', or the most representative, sequences of individual species present a significant challenge for sequence-based identification. The aims of this study were to determine the utility, and compare the performance of several clustering and classification algorithms to identify the species of 364 sequences of 16S rRNA gene with a defined species in GenBank, and 110 sequences of 16S rRNA gene with no defined species, all within the genus Nocardia. A total of 364 16S rRNA gene sequences of Nocardia species were studied. In addition, 110 16S rRNA gene sequences assigned only to the Nocardia genus level at the time of submission to GenBank were used for machine learning classification experiments. Different clustering algorithms were compared with a novel algorithm or the linear mapping (LM) of the distance matrix. Principal Components Analysis was used for the dimensionality reduction and visualization. Results: The LM algorithm achieved the highest performance and classified the set of 364 16S rRNA sequences into 80 clusters, the majority of which (83.52%) corresponded with the original species. The most representative 16S rRNA sequences for individual Nocardia species have been identified as 'centroids' in respective clusters from which the distances to all other sequences were minimized; 110 16S rRNA gene sequences with identifications recorded only at the genus level were classified using machine learning methods. Simple kNN machine learning demonstrated the highest performance and classified Nocardia species sequences with an accuracy of 92.7% and a mean frequency of 0.578.
Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments
Authors: Manal Helal, Fanrong Kong, Sharon C-A Chen, Fei Zhou, Dominic E Dwyer, John Potter, Vitali Sintchenko
Date: 2023-11-29 00:00:00
Tasks: Clustering, Dimensionality Reduction, Multiple Sequence Alignment

The aim of this study was to develop a method that would identify the cluster centroids and the optimal number of clusters for a given sensitivity level and could work equally well for the different sequence datasets. A novel method that combines the linear mapping hash function and multiple sequence alignment (MSA) was developed. This method takes advantage of the already sorted by similarity sequences from the MSA output, and identifies the optimal number of clusters, clusters cut-offs, and clusters centroids that can represent reference gene vouchers for the different species. The linear mapping hash function can map an already ordered by similarity distance matrix to indices to reveal gaps in the values around which the optimal cut-offs of the different clusters can be identified. The method was evaluated using sets of closely related (16S rRNA gene sequences of Nocardia species) and highly variable (VP1 genomic region of Enterovirus 71) sequences and outperformed existing unsupervised machine learning clustering methods and dimensionality reduction methods. This method does not require prior knowledge of the number of clusters or the distance between clusters, handles clusters of different sizes and shapes, and scales linearly with the dataset. The combination of MSA with the linear mapping hash function is a computationally efficient way of gene sequence clustering and can be a valuable tool for the assessment of similarity, clustering of different microbial genomes, identifying reference sequences, and for the study of evolution of bacteria and viruses.
QuadraNet: Improving High-Order Neural Interaction Efficiency with Hardware-Aware Quadratic Neural Networks
Authors: Chenhui Xu, Fuxun Yu, Zirui Xu, ChenChen Liu, JinJun Xiong, Xiang Chen
Date: 2023-11-29 00:00:00
Tasks: Hardware Aware Neural Architecture Search, Neural Architecture Search

Recent progress in computer vision-oriented neural network designs is mostly driven by capturing high-order neural interactions among inputs and features. And there emerged a variety of approaches to accomplish this, such as Transformers and its variants. However, these interactions generate a large amount of intermediate state and/or strong data dependency, leading to considerable memory consumption and computing cost, and therefore compromising the overall runtime performance. To address this challenge, we rethink the high-order interactive neural network design with a quadratic computing approach. Specifically, we propose QuadraNet -- a comprehensive model design methodology from neuron reconstruction to structural block and eventually to the overall neural network implementation. Leveraging quadratic neurons' intrinsic high-order advantages and dedicated computation optimization schemes, QuadraNet could effectively achieve optimal cognition and computation performance. Incorporating state-of-the-art hardware-aware neural architecture search and system integration techniques, QuadraNet could also be well generalized in different hardware constraint settings and deployment scenarios. The experiment shows thatQuadraNet achieves up to 1.5$\times$ throughput, 30% less memory footprint, and similar cognition performance, compared with the state-of-the-art high-order approaches.
C3Net: Compound Conditioned ControlNet for Multimodal Content Generation
Authors: Juntao Zhang, Yuehuai Liu, Yu-Wing Tai, Chi-Keung Tang
Date: 2023-11-29 00:00:00
Proceeding: CVPR 2024 1
Tasks: multimodal generation

We present Compound Conditioned ControlNet, C3Net, a novel generative neural architecture taking conditions from multiple modalities and synthesizing multimodal contents simultaneously (e.g., image, text, audio). C3Net adapts the ControlNet architecture to jointly train and make inferences on a production-ready diffusion model and its trainable copies. Specifically, C3Net first aligns the conditions from multi-modalities to the same semantic latent space using modality-specific encoders based on contrastive training. Then, it generates multimodal outputs based on the aligned latent space, whose semantic information is combined using a ControlNet-like architecture called Control C3-UNet. Correspondingly, with this system design, our model offers an improved solution for joint-modality generation through learning and explaining multimodal conditions instead of simply taking linear interpolations on the latent space. Meanwhile, as we align conditions to a unified latent space, C3Net only requires one trainable Control C3-UNet to work on multimodal semantic information. Furthermore, our model employs unimodal pretraining on the condition alignment stage, outperforming the non-pretrained alignment even on relatively scarce training data and thus demonstrating high-quality compound condition generation. We contribute the first high-quality tri-modal validation set to validate quantitatively that C3Net outperforms or is on par with first and contemporary state-of-the-art multimodal generation. Our codes and tri-modal dataset will be released.
Enhancing Cyber-Resilience in Integrated Energy System Scheduling with Demand Response Using Deep Reinforcement Learning
Authors: Yang Li, Wenjie Ma, Yuanzheng Li, Sen Li, Zhe Chen, Mohammad Shahidehpor
Date: 2023-11-28 00:00:00
Tasks: Deep Reinforcement Learning, Scheduling

Optimally scheduling multi-energy flow is an effective method to utilize renewable energy sources (RES) and improve the stability and economy of integrated energy systems (IES). However, the stable demand-supply of IES faces challenges from uncertainties that arise from RES and loads, as well as the increasing impact of cyber-attacks with advanced information and communication technologies adoption. To address these challenges, this paper proposes an innovative model-free resilience scheduling method based on state-adversarial deep reinforcement learning (DRL) for integrated demand response (IDR)-enabled IES. The proposed method designs an IDR program to explore the interaction ability of electricity-gas-heat flexible loads. Additionally, the state-adversarial Markov decision process (SA-MDP) model characterizes the energy scheduling problem of IES under cyber-attack, incorporating cyber-attacks as adversaries directly into the scheduling process. The state-adversarial soft actor-critic (SA-SAC) algorithm is proposed to mitigate the impact of cyber-attacks on the scheduling strategy, integrating adversarial training into the learning process to against cyber-attacks. Simulation results demonstrate that our method is capable of adequately addressing the uncertainties resulting from RES and loads, mitigating the impact of cyber-attacks on the scheduling strategy, and ensuring a stable demand supply for various energy sources. Moreover, the proposed method demonstrates resilience against cyber-attacks. Compared to the original soft actor-critic (SAC) algorithm, it achieves a 10% improvement in economic performance under cyber-attack scenarios.
Emergent and Predictable Memorization in Large Language Models
Authors: Stella Biderman, USVSN Sai Prashanth, Lintang Sutawika, Hailey Schoelkopf, Quentin Anthony, Shivanshu Purohit, Edward Raff
Date: 2023-04-21 00:00:00
Proceeding: NeurIPS 2023 11
Tasks: Memorization

Memorization, or the tendency of large language models (LLMs) to output entire sequences from their training data verbatim, is a key concern for safely deploying language models. In particular, it is vital to minimize a model's memorization of sensitive datapoints such as those containing personal identifiable information (PII). The prevalence of such undesirable memorization can pose issues for model trainers, and may even require discarding an otherwise functional model. We therefore seek to predict which sequences will be memorized before a large model's full train-time by extrapolating the memorization behavior of lower-compute trial runs. We measure memorization of the Pythia model suite and plot scaling laws for forecasting memorization, allowing us to provide equi-compute recommendations to maximize the reliability (recall) of such predictions. We additionally provide further novel discoveries on the distribution of memorization scores across models and data. We release all code and data necessary to reproduce the results in this paper at https://github.com/EleutherAI/pythia
What Do Llamas Really Think? Revealing Preference Biases in Language Model Representations
Authors: Raphael Tang, Xinyu Zhang, Jimmy Lin, Ferhan Ture
Date: 2023-11-30 00:00:00
Tasks: Language Modeling, Language Modelling

Do large language models (LLMs) exhibit sociodemographic biases, even when they decline to respond? To bypass their refusal to "speak," we study this research question by probing contextualized embeddings and exploring whether this bias is encoded in its latent representations. We propose a logistic Bradley-Terry probe which predicts word pair preferences of LLMs from the words' hidden vectors. We first validate our probe on three pair preference tasks and thirteen LLMs, where we outperform the word embedding association test (WEAT), a standard approach in testing for implicit association, by a relative 27% in error rate. We also find that word pair preferences are best represented in the middle layers. Next, we transfer probes trained on harmless tasks (e.g., pick the larger number) to controversial ones (compare ethnicities) to examine biases in nationality, politics, religion, and gender. We observe substantial bias for all target classes: for instance, the Mistral model implicitly prefers Europe to Africa, Christianity to Judaism, and left-wing to right-wing politics, despite declining to answer. This suggests that instruction fine-tuning does not necessarily debias contextualized embeddings. Our codebase is at https://github.com/castorini/biasprobe.
Mavericks at BLP-2023 Task 1: Ensemble-based Approach Using Language Models for Violence Inciting Text Detection
Authors: Saurabh Page, Sudeep Mangalvedhekar, Kshitij Deshpande, Tanmay Chavan, Sheetal Sonawane
Date: 2023-11-30 00:00:00
Tasks: Text Detection

This paper presents our work for the Violence Inciting Text Detection shared task in the First Workshop on Bangla Language Processing. Social media has accelerated the propagation of hate and violence-inciting speech in society. It is essential to develop efficient mechanisms to detect and curb the propagation of such texts. The problem of detecting violence-inciting texts is further exacerbated in low-resource settings due to sparse research and less data. The data provided in the shared task consists of texts in the Bangla language, where each example is classified into one of the three categories defined based on the types of violence-inciting texts. We try and evaluate several BERT-based models, and then use an ensemble of the models as our final submission. Our submission is ranked 10th in the final leaderboard of the shared task with a macro F1 score of 0.737.
Can training neural language models on a curriculum with developmentally plausible data improve alignment with human reading behavior?
Authors: Aryaman Chobey, Oliver Smith, Anzi Wang, Grusha Prasad
Date: 2023-11-30 00:00:00
Tasks: Sentence

The use of neural language models to model human behavior has met with mixed success. While some work has found that the surprisal estimates from these models can be used to predict a wide range of human neural and behavioral responses, other work studying more complex syntactic phenomena has found that these surprisal estimates generate incorrect behavioral predictions. This paper explores the extent to which the misalignment between empirical and model-predicted behavior can be minimized by training models on more developmentally plausible data, such as in the BabyLM Challenge. We trained teacher language models on the BabyLM "strict-small" dataset and used sentence level surprisal estimates from these teacher models to create a curriculum. We found tentative evidence that our curriculum made it easier for models to acquire linguistic knowledge from the training data: on the subset of tasks in the BabyLM challenge suite evaluating models' grammatical knowledge of English, models first trained on the BabyLM data curriculum and then on a few randomly ordered training epochs performed slightly better than models trained on randomly ordered epochs alone. This improved linguistic knowledge acquisition did not result in better alignment with human reading behavior, however: models trained on the BabyLM dataset (with or without a curriculum) generated predictions that were as misaligned with human behavior as models trained on larger less curated datasets. This suggests that training on developmentally plausible datasets alone is likely insufficient to generate language models capable of accurately predicting human language processing.
Mavericks at NADI 2023 Shared Task: Unravelling Regional Nuances through Dialect Identification using Transformer-based Approach
Authors: Vedant Deshpande, Yash Patwardhan, Kshitij Deshpande, Sudeep Mangalvedhekar, Ravindra Murumkar
Date: 2023-11-30 00:00:00
Tasks: Dialect Identification, Multi-class Classification, speech-recognition, Speech Recognition

In this paper, we present our approach for the "Nuanced Arabic Dialect Identification (NADI) Shared Task 2023". We highlight our methodology for subtask 1 which deals with country-level dialect identification. Recognizing dialects plays an instrumental role in enhancing the performance of various downstream NLP tasks such as speech recognition and translation. The task uses the Twitter dataset (TWT-2023) that encompasses 18 dialects for the multi-class classification problem. Numerous transformer-based models, pre-trained on Arabic language, are employed for identifying country-level dialects. We fine-tune these state-of-the-art models on the provided dataset. The ensembling method is leveraged to yield improved performance of the system. We achieved an F1-score of 76.65 (11th rank on the leaderboard) on the test dataset.
Mavericks at ArAIEval Shared Task: Towards a Safer Digital Space -- Transformer Ensemble Models Tackling Deception and Persuasion
Authors: Sudeep Mangalvedhekar, Kshitij Deshpande, Yash Patwardhan, Vedant Deshpande, Ravindra Murumkar
Date: 2023-11-30 00:00:00
Tasks: Articles, Binary Classification, Task 2

In this paper, we highlight our approach for the "Arabic AI Tasks Evaluation (ArAiEval) Shared Task 2023". We present our approaches for task 1-A and task 2-A of the shared task which focus on persuasion technique detection and disinformation detection respectively. Detection of persuasion techniques and disinformation has become imperative to avoid distortion of authentic information. The tasks use multigenre snippets of tweets and news articles for the given binary classification problem. We experiment with several transformer-based models that were pre-trained on the Arabic language. We fine-tune these state-of-the-art models on the provided dataset. Ensembling is employed to enhance the performance of the systems. We achieved a micro F1-score of 0.742 on task 1-A (8th rank on the leaderboard) and 0.901 on task 2-A (7th rank on the leaderboard) respectively.
CoRec: An Easy Approach for Coordination Recognition
Authors: Qing Wang, Haojie Jia, Wenfei Song, Qi Li
Date: 2023-11-30 00:00:00
Tasks: Sentence

In this paper, we observe and address the challenges of the coordination recognition task. Most existing methods rely on syntactic parsers to identify the coordinators in a sentence and detect the coordination boundaries. However, state-of-the-art syntactic parsers are slow and suffer from errors, especially for long and complicated sentences. To better solve the problems, we propose a pipeline model COordination RECognizer (CoRec). It consists of two components: coordinator identifier and conjunct boundary detector. The experimental results on datasets from various domains demonstrate the effectiveness and efficiency of the proposed method. Further experiments show that CoRec positively impacts downstream tasks, improving the yield of state-of-the-art Open IE models.
Women Are Beautiful, Men Are Leaders: Gender Stereotypes in Machine Translation and Language Modeling
Authors: Matúš Pikuliak, Andrea Hrckova, Stefan Oresko, Marián Šimko
Date: 2023-11-30 00:00:00
Tasks: Language Modeling, Language Modelling, Machine Translation, Translation

We present GEST -- a new manually created dataset designed to measure gender-stereotypical reasoning in language models and machine translation systems. GEST contains samples for 16 gender stereotypes about men and women (e.g., Women are beautiful, Men are leaders) that are compatible with the English language and 9 Slavic languages. The definition of said stereotypes was informed by gender experts. We used GEST to evaluate English and Slavic masked LMs, English generative LMs, and machine translation systems. We discovered significant and consistent amounts of gender-stereotypical reasoning in almost all the evaluated models and languages. Our experiments confirm the previously postulated hypothesis that the larger the model, the more stereotypical it usually is.
ArcMMLU: A Library and Information Science Benchmark for Large Language Models
Authors: Shitou Zhang, Zuchao Li, Xingshen Liu, Liming Yang, Ping Wang
Date: 2023-11-30 00:00:00
Tasks: MMLU

In light of the rapidly evolving capabilities of large language models (LLMs), it becomes imperative to develop rigorous domain-specific evaluation benchmarks to accurately assess their capabilities. In response to this need, this paper introduces ArcMMLU, a specialized benchmark tailored for the Library & Information Science (LIS) domain in Chinese. This benchmark aims to measure the knowledge and reasoning capability of LLMs within four key sub-domains: Archival Science, Data Science, Library Science, and Information Science. Following the format of MMLU/CMMLU, we collected over 6,000 high-quality questions for the compilation of ArcMMLU. This extensive compilation can reflect the diverse nature of the LIS domain and offer a robust foundation for LLM evaluation. Our comprehensive evaluation reveals that while most mainstream LLMs achieve an average accuracy rate above 50% on ArcMMLU, there remains a notable performance gap, suggesting substantial headroom for refinement in LLM capabilities within the LIS domain. Further analysis explores the effectiveness of few-shot examples on model performance and highlights challenging questions where models consistently underperform, providing valuable insights for targeted improvements. ArcMMLU fills a critical gap in LLM evaluations within the Chinese LIS domain and paves the way for future development of LLMs tailored to this specialized area.
ArthModel: Enhance Arithmetic Skills to Large Language Model
Authors: Yingdi Guo
Date: 2023-11-30 00:00:00
Tasks: Language Modeling, Language Modelling, Large Language Model, model

With the great success of ChatGPT, the research of large language models has become increasingly popular. However, the models have several limitations, such as toxicity and pool performance of arithmetic solving. Meanwhile, LLM may have some potential abilities that have yet to be exploited. In this paper, we choose a different way to enhance the arithmetic ability of LLM. We propose to train LLM to generate a postfix expression related to the arithmetic problem and incorporate it with small pretrained models. Moreover, this small model transfers the token embeddings into real dense numbers and invokes native functions of a deep learning platform to get the correct answer. To generate the final result, we propose prompt injection for adding the result outputs by the small model to LLM. This work provides different ways of thinking, training and using a language model. The codes and models will be released at \url{https://github.com/eteced/arithmetic_finetuning_v1}.
FFT: Towards Harmlessness Evaluation and Analysis for LLMs with Factuality, Fairness, Toxicity
Authors: Shiyao Cui, Zhenyu Zhang, Yilong Chen, Wenyuan Zhang, Tianyun Liu, Siqi Wang, Tingwen Liu
Date: 2023-11-30 00:00:00
Tasks: Fairness, Instruction Following, Text Generation

The widespread of generative artificial intelligence has heightened concerns about the potential harms posed by AI-generated texts, primarily stemming from factoid, unfair, and toxic content. Previous researchers have invested much effort in assessing the harmlessness of generative language models. However, existing benchmarks are struggling in the era of large language models (LLMs), due to the stronger language generation and instruction following capabilities, as well as wider applications. In this paper, we propose FFT, a new benchmark with 2116 elaborated-designed instances, for LLM harmlessness evaluation with factuality, fairness, and toxicity. To investigate the potential harms of LLMs, we evaluate 9 representative LLMs covering various parameter scales, training stages, and creators. Experiments show that the harmlessness of LLMs is still under-satisfactory, and extensive analysis derives some insightful findings that could inspire future research for harmless LLM research.