pwc-archive/papers-with-abstracts huggingface dataset:
Left Ventricle Contouring of Apical Three-Chamber Views on 2D Echocardiography
Authors: Alberto Gomez, Mihaela Porumb, Angela Mumith, Thierry Judge, Shan Gao, Woo-Jin Cho Kim, Jorge Oliveira, Agis Chartsias
Date: 2022-07-13 00:00:00
Tasks: Segmentation

We propose a new method to automatically contour the left ventricle on 2D echocardiographic images. Unlike most existing segmentation methods, which are based on predicting segmentation masks, we focus at predicting the endocardial contour and the key landmark points within this contour (basal points and apex). This provides a representation that is closer to how experts perform manual annotations and hence produce results that are physiologically more plausible. Our proposed method uses a two-headed network based on the U-Net architecture. One head predicts the 7 contour points, and the other head predicts a distance map to the contour. This approach was compared to the U-Net and to a point based approach, achieving performance gains of up to 30\% in terms of landmark localisation (<4.5mm) and distance to the ground truth contour (<3.5mm).
PointNorm: Dual Normalization is All You Need for Point Cloud Analysis
Authors: Shen Zheng, Jinqian Pan, Changjie Lu, Gaurav Gupta
Date: 2022-07-13 00:00:00
Tasks: 3D geometry, All, Computational Efficiency, Point Cloud Classification, Segmentation, Semantic Segmentation

Point cloud analysis is challenging due to the irregularity of the point cloud data structure. Existing works typically employ the ad-hoc sampling-grouping operation of PointNet++, followed by sophisticated local and/or global feature extractors for leveraging the 3D geometry of the point cloud. Unfortunately, the sampling-grouping operations do not address the point cloud's irregularity, whereas the intricate local and/or global feature extractors led to poor computational efficiency. In this paper, we introduce a novel DualNorm module after the sampling-grouping operation to effectively and efficiently address the irregularity issue. The DualNorm module consists of Point Normalization, which normalizes the grouped points to the sampled points, and Reverse Point Normalization, which normalizes the sampled points to the grouped points. The proposed framework, PointNorm, utilizes local mean and global standard deviation to benefit from both local and global features while maintaining a faithful inference speed. Experiments show that we achieved excellent accuracy and efficiency on ModelNet40 classification, ScanObjectNN classification, ShapeNetPart Part Segmentation, and S3DIS Semantic Segmentation. Code is available at https://github.com/ShenZheng2000/PointNorm-for-Point-Cloud-Analysis.
Implicit Neural Representations for Generative Modeling of Living Cell Shapes
Authors: David Wiesner, Julian Suk, Sven Dummer, David Svoboda, Jelmer M. Wolterink
Date: 2022-07-13 00:00:00
Tasks: Cell Tracking, Medical Image Segmentation

Methods allowing the synthesis of realistic cell shapes could help generate training data sets to improve cell tracking and segmentation in biomedical images. Deep generative models for cell shape synthesis require a light-weight and flexible representation of the cell shape. However, commonly used voxel-based representations are unsuitable for high-resolution shape synthesis, and polygon meshes have limitations when modeling topology changes such as cell growth or mitosis. In this work, we propose to use level sets of signed distance functions (SDFs) to represent cell shapes. We optimize a neural network as an implicit neural representation of the SDF value at any point in a 3D+time domain. The model is conditioned on a latent code, thus allowing the synthesis of new and unseen shape sequences. We validate our approach quantitatively and qualitatively on C. elegans cells that grow and divide, and lung cancer cells with growing complex filopodial protrusions. Our results show that shape descriptors of synthetic cells resemble those of real cells, and that our model is able to generate topologically plausible sequences of complex cell shapes in 3D+time.
Organic Priors in Non-Rigid Structure from Motion
Authors: Suryansh Kumar, Luc van Gool
Date: 2022-07-13 00:00:00

This paper advocates the use of organic priors in classical non-rigid structure from motion (NRSfM). By organic priors, we mean invaluable intermediate prior information intrinsic to the NRSfM matrix factorization theory. It is shown that such priors reside in the factorized matrices, and quite surprisingly, existing methods generally disregard them. The paper's main contribution is to put forward a simple, methodical, and practical method that can effectively exploit such organic priors to solve NRSfM. The proposed method does not make assumptions other than the popular one on the low-rank shape and offers a reliable solution to NRSfM under orthographic projection. Our work reveals that the accessibility of organic priors is independent of the camera motion and shape deformation type. Besides that, the paper provides insights into the NRSfM factorization -- both in terms of shape and motion -- and is the first approach to show the benefit of single rotation averaging for NRSfM. Furthermore, we outline how to effectively recover motion and non-rigid 3D shape using the proposed organic prior based approach and demonstrate results that outperform prior-free NRSfM performance by a significant margin. Finally, we present the benefits of our method via extensive experiments and evaluations on several benchmark datasets.
Is Appearance Free Action Recognition Possible?
Authors: Filip Ilic, Thomas Pock, Richard P. Wildes
Date: 2022-07-13 00:00:00
Tasks: Action Recognition, Optical Flow Estimation, Video Understanding

Intuition might suggest that motion and dynamic information are key to video-based action recognition. In contrast, there is evidence that state-of-the-art deep-learning video understanding architectures are biased toward static information available in single frames. Presently, a methodology and corresponding dataset to isolate the effects of dynamic information in video are missing. Their absence makes it difficult to understand how well contemporary architectures capitalize on dynamic vs. static information. We respond with a novel Appearance Free Dataset (AFD) for action recognition. AFD is devoid of static information relevant to action recognition in a single frame. Modeling of the dynamics is necessary for solving the task, as the action is only apparent through consideration of the temporal dimension. We evaluated 11 contemporary action recognition architectures on AFD as well as its related RGB video. Our results show a notable decrease in performance for all architectures on AFD compared to RGB. We also conducted a complimentary study with humans that shows their recognition accuracy on AFD and RGB is very similar and much better than the evaluated architectures on AFD. Our results motivate a novel architecture that revives explicit recovery of optical flow, within a contemporary design for best performance on AFD and RGB.
Context-Consistent Semantic Image Editing with Style-Preserved Modulation
Authors: Wuyang Luo, Su Yang, Hong Wang, Bo Long, Weishan Zhang
Date: 2022-07-13 00:00:00
Tasks: Attribute

Semantic image editing utilizes local semantic label maps to generate the desired content in the edited region. A recent work borrows SPADE block to achieve semantic image editing. However, it cannot produce pleasing results due to style discrepancy between the edited region and surrounding pixels. We attribute this to the fact that SPADE only uses an image-independent local semantic layout but ignores the image-specific styles included in the known pixels. To address this issue, we propose a style-preserved modulation (SPM) comprising two modulations processes: The first modulation incorporates the contextual style and semantic layout, and then generates two fused modulation parameters. The second modulation employs the fused parameters to modulate feature maps. By using such two modulations, SPM can inject the given semantic layout while preserving the image-specific context style. Moreover, we design a progressive architecture for generating the edited content in a coarse-to-fine manner. The proposed method can obtain context-consistent results and significantly alleviate the unpleasant boundary between the generated regions and the known pixels.
SlimSeg: Slimmable Semantic Segmentation with Boundary Supervision
Authors: Danna Xue, Fei Yang, Pei Wang, Luis Herranz, Jinqiu Sun, Yu Zhu, Yanning Zhang
Date: 2022-07-13 00:00:00
Tasks: Knowledge Distillation, Segmentation, Semantic Segmentation

Accurate semantic segmentation models typically require significant computational resources, inhibiting their use in practical applications. Recent works rely on well-crafted lightweight models to achieve fast inference. However, these models cannot flexibly adapt to varying accuracy and efficiency requirements. In this paper, we propose a simple but effective slimmable semantic segmentation (SlimSeg) method, which can be executed at different capacities during inference depending on the desired accuracy-efficiency tradeoff. More specifically, we employ parametrized channel slimming by stepwise downward knowledge distillation during training. Motivated by the observation that the differences between segmentation results of each submodel are mainly near the semantic borders, we introduce an additional boundary guided semantic segmentation loss to further improve the performance of each submodel. We show that our proposed SlimSeg with various mainstream networks can produce flexible models that provide dynamic adjustment of computational cost and better performance than independent models. Extensive experiments on semantic segmentation benchmarks, Cityscapes and CamVid, demonstrate the generalization ability of our framework.
Entry-Flipped Transformer for Inference and Prediction of Participant Behavior
Authors: Bo Hu, Tat-Jen Cham
Date: 2022-07-13 00:00:00

Some group activities, such as team sports and choreographed dances, involve closely coupled interaction between participants. Here we investigate the tasks of inferring and predicting participant behavior, in terms of motion paths and actions, under such conditions. We narrow the problem to that of estimating how a set target participants react to the behavior of other observed participants. Our key idea is to model the spatio-temporal relations among participants in a manner that is robust to error accumulation during frame-wise inference and prediction. We propose a novel Entry-Flipped Transformer (EF-Transformer), which models the relations of participants by attention mechanisms on both spatial and temporal domains. Unlike typical transformers, we tackle the problem of error accumulation by flipping the order of query, key, and value entries, to increase the importance and fidelity of observed features in the current frame. Comparative experiments show that our EF-Transformer achieves the best performance on a newly-collected tennis doubles dataset, a Ceilidh dance dataset, and two pedestrian datasets. Furthermore, it is also demonstrated that our EF-Transformer is better at limiting accumulated errors and recovering from wrong estimations.
Beyond Hard Labels: Investigating data label distributions
Authors: Vasco Grossmann, Lars Schmarje, Reinhard Koch
Date: 2022-07-13 00:00:00

High-quality data is a key aspect of modern machine learning. However, labels generated by humans suffer from issues like label noise and class ambiguities. We raise the question of whether hard labels are sufficient to represent the underlying ground truth distribution in the presence of these inherent imprecision. Therefore, we compare the disparity of learning with hard and soft labels quantitatively and qualitatively for a synthetic and a real-world dataset. We show that the application of soft labels leads to improved performance and yields a more regular structure of the internal feature space.
YOLO2U-Net: Detection-Guided 3D Instance Segmentation for Microscopy
Authors: Amirkoushyar Ziabari, Derek C. Ros, Abbas Shirinifard, David Solecki
Date: 2022-07-13 00:00:00
Tasks: 3D Instance Segmentation, Instance Segmentation, Segmentation, Semantic Segmentation

Microscopy imaging techniques are instrumental for characterization and analysis of biological structures. As these techniques typically render 3D visualization of cells by stacking 2D projections, issues such as out-of-plane excitation and low resolution in the $z$-axis may pose challenges (even for human experts) to detect individual cells in 3D volumes as these non-overlapping cells may appear as overlapping. In this work, we introduce a comprehensive method for accurate 3D instance segmentation of cells in the brain tissue. The proposed method combines the 2D YOLO detection method with a multi-view fusion algorithm to construct a 3D localization of the cells. Next, the 3D bounding boxes along with the data volume are input to a 3D U-Net network that is designed to segment the primary cell in each 3D bounding box, and in turn, to carry out instance segmentation of cells in the entire volume. The promising performance of the proposed method is shown in comparison with some current deep learning-based 3D instance segmentation methods.
Is one annotation enough? A data-centric image classification benchmark for noisy and ambiguous label estimation
Authors: Lars Schmarje, Vasco Grossmann, Claudius Zelenka, Sabine Dippel, Rainer Kiko, Mariusz Oszust, Matti Pastell, Jenny Stracke, Anna Valros, Nina Volkmann, Reinhard Koch
Date: 2022-07-13 00:00:00
Tasks: image-classification, Image Classification, Noise Estimation

High-quality data is necessary for modern machine learning. However, the acquisition of such data is difficult due to noisy and ambiguous annotations of humans. The aggregation of such annotations to determine the label of an image leads to a lower data quality. We propose a data-centric image classification benchmark with ten real-world datasets and multiple annotations per image to allow researchers to investigate and quantify the impact of such data quality issues. With the benchmark we can study the impact of annotation costs and (semi-)supervised methods on the data quality for image classification by applying a novel methodology to a range of different algorithms and diverse datasets. Our benchmark uses a two-phase approach via a data label improvement method in the first phase and a fixed evaluation model in the second phase. Thereby, we give a measure for the relation between the input labeling effort and the performance of (semi-)supervised algorithms to enable a deeper insight into how labels should be created for effective model training. Across thousands of experiments, we show that one annotation is not enough and that the inclusion of multiple annotations allows for a better approximation of the real underlying class distribution. We identify that hard labels can not capture the ambiguity of the data and this might lead to the common issue of overconfident models. Based on the presented datasets, benchmarked methods, and analysis, we create multiple research opportunities for the future directed at the improvement of label noise estimation approaches, data annotation schemes, realistic (semi-)supervised learning, or more reliable image collection.
Sample-dependent Adaptive Temperature Scaling for Improved Calibration
Authors: Tom Joy, Francesco Pinto, Ser-Nam Lim, Philip H. S. Torr, Puneet K. Dokania
Date: 2022-07-13 00:00:00
Tasks: Out of Distribution (OOD) Detection

It is now well known that neural networks can be wrong with high confidence in their predictions, leading to poor calibration. The most common post-hoc approach to compensate for this is to perform temperature scaling, which adjusts the confidences of the predictions on any input by scaling the logits by a fixed value. Whilst this approach typically improves the average calibration across the whole test dataset, this improvement typically reduces the individual confidences of the predictions irrespective of whether the classification of a given input is correct or incorrect. With this insight, we base our method on the observation that different samples contribute to the calibration error by varying amounts, with some needing to increase their confidence and others needing to decrease it. Therefore, for each input, we propose to predict a different temperature value, allowing us to adjust the mismatch between confidence and accuracy at a finer granularity. Furthermore, we observe improved results on OOD detection and can also extract a notion of hardness for the data-points. Our method is applied post-hoc, consequently using very little computation time and with a negligible memory footprint and is applied to off-the-shelf pre-trained classifiers. We test our method on the ResNet50 and WideResNet28-10 architectures using the CIFAR10/100 and Tiny-ImageNet datasets, showing that producing per-data-point temperatures is beneficial also for the expected calibration error across the whole test set. Code is available at: https://github.com/thwjoy/adats.
Trans4Map: Revisiting Holistic Bird's-Eye-View Mapping from Egocentric Images to Allocentric Semantics with Vision Transformers
Authors: Chang Chen, Jiaming Zhang, Kailun Yang, Kunyu Peng, Rainer Stiefelhagen
Date: 2022-07-13 00:00:00
Tasks: Decoder, Semantic Segmentation

Humans have an innate ability to sense their surroundings, as they can extract the spatial representation from the egocentric perception and form an allocentric semantic map via spatial transformation and memory updating. However, endowing mobile agents with such a spatial sensing ability is still a challenge, due to two difficulties: (1) the previous convolutional models are limited by the local receptive field, thus, struggling to capture holistic long-range dependencies during observation; (2) the excessive computational budgets required for success, often lead to a separation of the mapping pipeline into stages, resulting the entire mapping process inefficient. To address these issues, we propose an end-to-end one-stage Transformer-based framework for Mapping, termed Trans4Map. Our egocentric-to-allocentric mapping process includes three steps: (1) the efficient transformer extracts the contextual features from a batch of egocentric images; (2) the proposed Bidirectional Allocentric Memory (BAM) module projects egocentric features into the allocentric memory; (3) the map decoder parses the accumulated memory and predicts the top-down semantic segmentation map. In contrast, Trans4Map achieves state-of-the-art results, reducing 67.2% parameters, yet gaining a +3.25% mIoU and a +4.09% mBF1 improvements on the Matterport3D dataset. Code at: https://github.com/jamycheung/Trans4Map.
Adversarially-Aware Robust Object Detector
Authors: Ziyi Dong, Pengxu Wei, Liang Lin
Date: 2022-07-13 00:00:00
Tasks: Adversarial Robustness, Object, object-detection, Object Detection

Object detection, as a fundamental computer vision task, has achieved a remarkable progress with the emergence of deep neural networks. Nevertheless, few works explore the adversarial robustness of object detectors to resist adversarial attacks for practical applications in various real-world scenarios. Detectors have been greatly challenged by unnoticeable perturbation, with sharp performance drop on clean images and extremely poor performance on adversarial images. In this work, we empirically explore the model training for adversarial robustness in object detection, which greatly attributes to the conflict between learning clean images and adversarial images. To mitigate this issue, we propose a Robust Detector (RobustDet) based on adversarially-aware convolution to disentangle gradients for model learning on clean and adversarial images. RobustDet also employs the Adversarial Image Discriminator (AID) and Consistent Features with Reconstruction (CFR) to ensure a reliable robustness. Extensive experiments on PASCAL VOC and MS-COCO demonstrate that our model effectively disentangles gradients and significantly enhances the detection robustness with maintaining the detection ability on clean images.
Domain adaptation strategies for cancer-independent detection of lymph node metastases
Authors: Péter Bándi, Maschenka Balkenhol, Marcory van Dijk, Bram van Ginneken, Jeroen van der Laak, Geert Litjens
Date: 2022-07-13 00:00:00
Tasks: Cancer Metastasis Detection, Domain Adaptation

Recently, large, high-quality public datasets have led to the development of convolutional neural networks that can detect lymph node metastases of breast cancer at the level of expert pathologists. Many cancers, regardless of the site of origin, can metastasize to lymph nodes. However, collecting and annotating high-volume, high-quality datasets for every cancer type is challenging. In this paper we investigate how to leverage existing high-quality datasets most efficiently in multi-task settings for closely related tasks. Specifically, we will explore different training and domain adaptation strategies, including prevention of catastrophic forgetting, for colon and head-and-neck cancer metastasis detection in lymph nodes. Our results show state-of-the-art performance on both cancer metastasis detection tasks. Furthermore, we show the effectiveness of repeated adaptation of networks from one cancer type to another to obtain multi-task metastasis detection networks. Last, we show that leveraging existing high-quality datasets can significantly boost performance on new target tasks and that catastrophic forgetting can be effectively mitigated using regularization.
Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration
Authors: Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard Fan, Caroline Moore, Mirabela Rusu, Geoffrey Sonn, Philip Torr, Dean Barratt, Yipeng Hu
Date: 2022-07-13 00:00:00
Tasks: Image Registration, Quantization

Image registration is useful for quantifying morphological changes in longitudinal MR images from prostate cancer patients. This paper describes a development in improving the learning-based registration algorithms, for this challenging clinical application often with highly variable yet limited training data. First, we report that the latent space can be clustered into a much lower dimensional space than that commonly found as bottleneck features at the deep layer of a trained registration network. Based on this observation, we propose a hierarchical quantization method, discretizing the learned feature vectors using a jointly-trained dictionary with a constrained size, in order to improve the generalisation of the registration networks. Furthermore, a novel collaborative dictionary is independently optimised to incorporate additional prior information, such as the segmentation of the gland or other regions of interest, in the latent quantized space. Based on 216 real clinical images from 86 prostate cancer patients, we show the efficacy of both the designed components. Improved registration accuracy was obtained with statistical significance, in terms of both Dice on gland and target registration error on corresponding landmarks, the latter of which achieved 5.46 mm, an improvement of 28.7\% from the baseline without quantization. Experimental results also show that the difference in performance was indeed minimised between training and testing data.