pwc-archive/papers-with-abstracts huggingface dataset:
Explainable Diabetic Retinopathy Detection and Retinal Image Generation
Authors: Yuhao Niu, Lin Gu, Yitian Zhao, Feng Lu
Date: 2021-07-01 00:00:00
Tasks: Data Augmentation, Diabetic Retinopathy Detection, Image Generation, Interpretable Machine Learning, Medical Diagnosis, Medical Image Generation

Though deep learning has shown successful performance in classifying the label and severity stage of certain diseases, most of them give few explanations on how to make predictions. Inspired by Koch's Postulates, the foundation in evidence-based medicine (EBM) to identify the pathogen, we propose to exploit the interpretability of deep learning application in medical diagnosis. By determining and isolating the neuron activation patterns on which diabetic retinopathy (DR) detector relies to make decisions, we demonstrate the direct relation between the isolated neuron activation and lesions for a pathological explanation. To be specific, we first define novel pathological descriptors using activated neurons of the DR detector to encode both spatial and appearance information of lesions. Then, to visualize the symptom encoded in the descriptor, we propose Patho-GAN, a new network to synthesize medically plausible retinal images. By manipulating these descriptors, we could even arbitrarily control the position, quantity, and categories of generated lesions. We also show that our synthesized images carry the symptoms directly related to diabetic retinopathy diagnosis. Our generated images are both qualitatively and quantitatively superior to the ones by previous methods. Besides, compared to existing methods that take hours to generate an image, our second level speed endows the potential to be an effective solution for data augmentation.
Lossless Coding of Point Cloud Geometry using a Deep Generative Model
Authors: Dat Thanh Nguyen, Maurice Quach, Giuseppe Valenzise, Pierre Duhamel
Date: 2021-07-01 00:00:00
Tasks: Data Augmentation

This paper proposes a lossless point cloud (PC) geometry compression method that uses neural networks to estimate the probability distribution of voxel occupancy. First, to take into account the PC sparsity, our method adaptively partitions a point cloud into multiple voxel block sizes. This partitioning is signalled via an octree. Second, we employ a deep auto-regressive generative model to estimate the occupancy probability of each voxel given the previously encoded ones. We then employ the estimated probabilities to code efficiently a block using a context-based arithmetic coder. Our context has variable size and can expand beyond the current block to learn more accurate probabilities. We also consider using data augmentation techniques to increase the generalization capability of the learned probability models, in particular in the presence of noise and lower-density point clouds. Experimental evaluation, performed on a variety of point clouds from four different datasets and with diverse characteristics, demonstrates that our method reduces significantly (by up to 30%) the rate for lossless coding compared to the state-of-the-art MPEG codec.
Supervised Segmentation with Domain Adaptation for Small Sampled Orbital CT Images
Authors: Sungho Suh, Sojeong Cheon, Wonseo Choi, Yeon Woong Chung, Won-Kyung Cho, Ji-Sun Paik, Sung Eun Kim, Dong-Jin Chang, Yong Oh Lee
Date: 2021-07-01 00:00:00
Tasks: Domain Adaptation, Medical Image Analysis, Segmentation

Deep neural networks (DNNs) have been widely used for medical image analysis. However, the lack of access a to large-scale annotated dataset poses a great challenge, especially in the case of rare diseases, or new domains for the research society. Transfer of pre-trained features, from the relatively large dataset is a considerable solution. In this paper, we have explored supervised segmentation using domain adaptation for optic nerve and orbital tumor, when only small sampled CT images are given. Even the lung image database consortium image collection (LIDC-IDRI) is a cross-domain to orbital CT, but the proposed domain adaptation method improved the performance of attention U-Net for the segmentation in public optic nerve dataset and our clinical orbital tumor dataset. The code and dataset are available at https://github.com/cmcbigdata.
Deep Hierarchical Super Resolution for Scientific Data
Authors: Skylar W. Wurster, Hanqi Guo, Han-Wei Shen, Thomas Peterka, Jiayi Xu
Date: 2021-05-30 00:00:00
Tasks: Super-Resolution

We present a novel technique for hierarchical super resolution (SR) with neural networks (NNs), which upscales volumetric data represented with an octree data structure to a high-resolution uniform grid with minimal seam artifacts on octree node boundaries. Our method uses existing state-of-the-art SR models and adds flexibility to upscale input data with varying levels of detail across the domain, instead of only uniform grid data that are supported in previous approaches. The key is to use a hierarchy of SR NNs, each trained to perform 2x SR between two levels of detail, with a hierarchical SR algorithm that minimizes seam artifacts by starting from the coarsest level of detail and working up. We show that our hierarchical approach outperforms baseline interpolation and hierarchical upscaling methods, and demonstrate the usefulness of our proposed approach across three use cases including data reduction using hierarchical downsampling+SR instead of uniform downsampling+SR, computation savings for hierarchical finite-time Lyapunov exponent field calculation, and super-resolving low-resolution simulation results for a high-resolution approximation visualization.
SinGAN-Seg: Synthetic training data generation for medical image segmentation
Authors: Vajira Thambawita, Pegah Salehi, Sajad Amouei Sheshkal, Steven A. Hicks, Hugo L. Hammer, Sravanthi Parasa, Thomas de Lange, Pål Halvorsen, Michael A. Riegler
Date: 2021-06-29 00:00:00
Tasks: Image Segmentation, Medical Image Segmentation, Semantic Segmentation, Style Transfer, Synthetic Data Generation

Analyzing medical data to find abnormalities is a time-consuming and costly task, particularly for rare abnormalities, requiring tremendous efforts from medical experts. Artificial intelligence has become a popular tool for the automatic processing of medical data, acting as a supportive tool for doctors. However, the machine learning models used to build these tools are highly dependent on the data used to train them. Large amounts of data can be difficult to obtain in medicine due to privacy, expensive and time-consuming annotations, and a general lack of data samples for infrequent lesions. Here, we present a novel synthetic data generation pipeline, called SinGAN-Seg, to produce synthetic medical images with corresponding masks using a single training image. Our method is different from the traditional GANs because our model needs only a single image and the corresponding ground truth to train. Our method produces alternative artificial segmentation datasets with ground truth masks when real datasets are not allowed to share. The pipeline is evaluated using qualitative and quantitative comparisons between real and synthetic data to show that the style transfer technique used in our pipeline significantly improves the quality of the generated data and our method is better than other state-of-the-art GANs to prepare synthetic images when the size of training datasets are limited. By training UNet++ using both real and the synthetic data generated from the SinGAN-Seg pipeline, we show that models trained with synthetic data have very close performances to those trained on real data when the datasets have a considerable amount of data. In contrast, Synthetic data generated from the SinGAN-Seg pipeline can improve the performance of segmentation models when training datasets do not have a considerable amount of data. The code is available on GitHub.
Improving Human Motion Prediction Through Continual Learning
Authors: Mohammad Samin Yasar, Tariq Iqbal
Date: 2021-07-01 00:00:00
Tasks: Continual Learning, Diversity, Human motion prediction, motion prediction, Prediction

Human motion prediction is an essential component for enabling closer human-robot collaboration. The task of accurately predicting human motion is non-trivial. It is compounded by the variability of human motion, both at a skeletal level due to the varying size of humans and at a motion level due to individual movement's idiosyncrasies. These variables make it challenging for learning algorithms to obtain a general representation that is robust to the diverse spatio-temporal patterns of human motion. In this work, we propose a modular sequence learning approach that allows end-to-end training while also having the flexibility of being fine-tuned. Our approach relies on the diversity of training samples to first learn a robust representation, which can then be fine-tuned in a continual learning setup to predict the motion of new subjects. We evaluated the proposed approach by comparing its performance against state-of-the-art baselines. The results suggest that our approach outperforms other methods over all the evaluated temporal horizons, using a small amount of data for fine-tuning. The improved performance of our approach opens up the possibility of using continual learning for personalized and reliable motion prediction.
Generalization and Robustness Implications in Object-Centric Learning
Authors: Andrea Dittadi, Samuele Papa, Michele De Vita, Bernhard Schölkopf, Ole Winther, Francesco Locatello
Date: 2021-07-01 00:00:00
Tasks: Inductive Bias, Object, Property Prediction, Representation Learning, Systematic Generalization

The idea behind object-centric representation learning is that natural scenes can better be modeled as compositions of objects and their relations as opposed to distributed representations. This inductive bias can be injected into neural networks to potentially improve systematic generalization and performance of downstream tasks in scenes with multiple objects. In this paper, we train state-of-the-art unsupervised models on five common multi-object datasets and evaluate segmentation metrics and downstream object property prediction. In addition, we study generalization and robustness by investigating the settings where either a single object is out of distribution -- e.g., having an unseen color, texture, or shape -- or global properties of the scene are altered -- e.g., by occlusions, cropping, or increasing the number of objects. From our experimental study, we find object-centric representations to be useful for downstream tasks and generally robust to most distribution shifts affecting objects. However, when the distribution shift affects the input in a less structured manner, robustness in terms of segmentation and downstream task performance may vary significantly across models and distribution shifts.
Stabilizing Deep Q-Learning with ConvNets and Vision Transformers under Data Augmentation
Authors: Nicklas Hansen, Hao Su, Xiaolong Wang
Date: 2021-07-01 00:00:00
Proceeding: NeurIPS 2021 12
Tasks: Data Augmentation, Q-Learning, Reinforcement Learning (RL)

While agents trained by Reinforcement Learning (RL) can solve increasingly challenging tasks directly from visual observations, generalizing learned skills to novel environments remains very challenging. Extensive use of data augmentation is a promising technique for improving generalization in RL, but it is often found to decrease sample efficiency and can even lead to divergence. In this paper, we investigate causes of instability when using data augmentation in common off-policy RL algorithms. We identify two problems, both rooted in high-variance Q-targets. Based on our findings, we propose a simple yet effective technique for stabilizing this class of algorithms under augmentation. We perform extensive empirical evaluation of image-based RL using both ConvNets and Vision Transformers (ViT) on a family of benchmarks based on DeepMind Control Suite, as well as in robotic manipulation tasks. Our method greatly improves stability and sample efficiency of ConvNets under augmentation, and achieves generalization results competitive with state-of-the-art methods for image-based RL in environments with unseen visuals. We further show that our method scales to RL with ViT-based architectures, and that data augmentation may be especially important in this setting.
Learning to See before Learning to Act: Visual Pre-training for Manipulation
Authors: Lin Yen-Chen, Andy Zeng, Shuran Song, Phillip Isola, Tsung-Yi Lin
Date: 2021-07-01 00:00:00
Tasks: Transfer Learning

Does having visual priors (e.g. the ability to detect objects) facilitate learning to perform vision-based manipulation (e.g. picking up objects)? We study this problem under the framework of transfer learning, where the model is first trained on a passive vision task, and adapted to perform an active manipulation task. We find that pre-training on vision tasks significantly improves generalization and sample efficiency for learning to manipulate objects. However, realizing these gains requires careful selection of which parts of the model to transfer. Our key insight is that outputs of standard vision models highly correlate with affordance maps commonly used in manipulation. Therefore, we explore directly transferring model parameters from vision networks to affordance prediction networks, and show that this can result in successful zero-shot adaptation, where a robot can pick up certain objects with zero robotic experience. With just a small amount of robotic experience, we can further fine-tune the affordance model to achieve better results. With just 10 minutes of suction experience or 1 hour of grasping experience, our method achieves ~80% success rate at picking up novel objects.
Zipf's laws of meaning in Catalan
Authors: Neus Català, Jaume Baixeries, Ramon Ferrer-Cancho, Lluís Padró, Antoni Hernández-Fernández
Date: 2021-06-30 00:00:00

In his pioneering research, G. K. Zipf formulated a couple of statistical laws on the relationship between the frequency of a word with its number of meanings: the law of meaning distribution, relating the frequency of a word and its frequency rank, and the meaning-frequency law, relating the frequency of a word with its number of meanings. Although these laws were formulated more than half a century ago, they have been only investigated in a few languages. Here we present the first study of these laws in Catalan. We verify these laws in Catalan via the relationship among their exponents and that of the rank-frequency law. We present a new protocol for the analysis of these Zipfian laws that can be extended to other languages. We report the first evidence of two marked regimes for these laws in written language and speech, paralleling the two regimes in Zipf's rank-frequency law in large multi-author corpora discovered in early 2000s. Finally, the implications of these two regimes will be discussed.
All That's 'Human' Is Not Gold: Evaluating Human Evaluation of Generated Text
Authors: Elizabeth Clark, Tal August, Sofia Serrano, Nikita Haduong, Suchin Gururangan, Noah A. Smith
Date: 2021-06-30 00:00:00
Tasks: All, Articles, nlg evaluation, Text Generation

Human evaluations are typically considered the gold standard in natural language generation, but as models' fluency improves, how well can evaluators detect and judge machine-generated text? We run a study assessing non-experts' ability to distinguish between human- and machine-authored text (GPT2 and GPT3) in three domains (stories, news articles, and recipes). We find that, without training, evaluators distinguished between GPT3- and human-authored text at random chance level. We explore three approaches for quickly training evaluators to better identify GPT3-authored text (detailed instructions, annotated examples, and paired examples) and find that while evaluators' accuracy improved up to 55%, it did not significantly improve across the three domains. Given the inconsistent results across text domains and the often contradictory reasons evaluators gave for their judgments, we examine the role untrained human evaluations play in NLG evaluation and provide recommendations to NLG researchers for improving human evaluations of text generated from state-of-the-art models.
Learning to communicate about shared procedural abstractions
Authors: William P. McCarthy, Robert D. Hawkins, Haoliang Wang, Cameron Holdaway, Judith E. Fan
Date: 2021-06-30 00:00:00

Many real-world tasks require agents to coordinate their behavior to achieve shared goals. Successful collaboration requires not only adopting the same communicative conventions, but also grounding these conventions in the same task-appropriate conceptual abstractions. We investigate how humans use natural language to collaboratively solve physical assembly problems more effectively over time. Human participants were paired up in an online environment to reconstruct scenes containing two block towers. One participant could see the target towers, and sent assembly instructions for the other participant to reconstruct. Participants provided increasingly concise instructions across repeated attempts on each pair of towers, using higher-level referring expressions that captured each scene's hierarchical structure. To explain these findings, we extend recent probabilistic models of ad-hoc convention formation with an explicit perceptual learning mechanism. These results shed light on the inductive biases that enable intelligent agents to coordinate upon shared procedural abstractions.
Regressing Location on Text for Probabilistic Geocoding
Authors: Benjamin J. Radford
Date: 2021-06-30 00:00:00
Proceeding: ACL (CASE) 2021 8

Text data are an important source of detailed information about social and political events. Automated systems parse large volumes of text data to infer or extract structured information that describes actors, actions, dates, times, and locations. One of these sub-tasks is geocoding: predicting the geographic coordinates associated with events or locations described by a given text. We present an end-to-end probabilistic model for geocoding text data. Additionally, we collect a novel data set for evaluating the performance of geocoding systems. We compare the model-based solution, called ELECTRo-map, to the current state-of-the-art open source system for geocoding texts for event data. Finally, we discuss the benefits of end-to-end model-based geocoding, including principled uncertainty estimation and the ability of these models to leverage contextual information.
Controllable Open-ended Question Generation with A New Question Type Ontology
Authors: Shuyang Cao, Lu Wang
Date: 2021-07-01 00:00:00
Proceeding: ACL 2021 5
Tasks: Diversity, Question Generation, Question-Generation, Vocal Bursts Type Prediction

We investigate the less-explored task of generating open-ended questions that are typically answered by multiple sentences. We first define a new question type ontology which differentiates the nuanced nature of questions better than widely used question words. A new dataset with 4,959 questions is labeled based on the new ontology. We then propose a novel question type-aware question generation framework, augmented by a semantic graph representation, to jointly predict question focuses and produce the question. Based on this framework, we further use both exemplars and automatically generated templates to improve controllability and diversity. Experiments on two newly collected large-scale datasets show that our model improves question quality over competitive comparisons based on automatic metrics. Human judges also rate our model outputs highly in answerability, coverage of scope, and overall quality. Finally, our model variants with templates can produce questions with enhanced controllability and diversity.
Elbert: Fast Albert with Confidence-Window Based Early Exit
Authors: Keli Xie, Siyuan Lu, Meiqi Wang, Zhongfeng Wang
Date: 2021-07-01 00:00:00
Tasks: Decision Making

Despite the great success in Natural Language Processing (NLP) area, large pre-trained language models like BERT are not well-suited for resource-constrained or real-time applications owing to the large number of parameters and slow inference speed. Recently, compressing and accelerating BERT have become important topics. By incorporating a parameter-sharing strategy, ALBERT greatly reduces the number of parameters while achieving competitive performance. Nevertheless, ALBERT still suffers from a long inference time. In this work, we propose the ELBERT, which significantly improves the average inference speed compared to ALBERT due to the proposed confidence-window based early exit mechanism, without introducing additional parameters or extra training overhead. Experimental results show that ELBERT achieves an adaptive inference speedup varying from 2$\times$ to 10$\times$ with negligible accuracy degradation compared to ALBERT on various datasets. Besides, ELBERT achieves higher accuracy than existing early exit methods used for accelerating BERT under the same computation cost. Furthermore, to understand the principle of the early exit mechanism, we also visualize the decision-making process of it in ELBERT.
Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards
Authors: Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
Date: 2021-07-01 00:00:00
Proceeding: ACL 2021 5
Tasks: Question Answering, Question Generation, Question-Generation, reinforcement-learning, Reinforcement Learning (RL), valid

The growth of online consumer health questions has led to the necessity for reliable and accurate question answering systems. A recent study showed that manual summarization of consumer health questions brings significant improvement in retrieving relevant answers. However, the automatic summarization of long questions is a challenging task due to the lack of training data and the complexity of the related subtasks, such as the question focus and type recognition. In this paper, we introduce a reinforcement learning-based framework for abstractive question summarization. We propose two novel rewards obtained from the downstream tasks of (i) question-type identification and (ii) question-focus recognition to regularize the question generation model. These rewards ensure the generation of semantically valid questions and encourage the inclusion of key medical entities/foci in the question summary. We evaluated our proposed method on two benchmark datasets and achieved higher performance over state-of-the-art models. The manual evaluation of the summaries reveals that the generated questions are more diverse and have fewer factual inconsistencies than the baseline summaries
Word-Free Spoken Language Understanding for Mandarin-Chinese
Authors: Zhiyuan Guo, Yuexin Li, Guo Chen, Xingyu Chen, Akshat Gupta
Date: 2021-07-01 00:00:00
Tasks: Automatic Speech Recognition, Automatic Speech Recognition (ASR), intent-classification, Intent Classification, Language Modeling, Language Modelling, speech-recognition, Speech Recognition, Spoken Dialogue Systems, Spoken Language Understanding

Spoken dialogue systems such as Siri and Alexa provide great convenience to people's everyday life. However, current spoken language understanding (SLU) pipelines largely depend on automatic speech recognition (ASR) modules, which require a large amount of language-specific training data. In this paper, we propose a Transformer-based SLU system that works directly on phones. This acoustic-based SLU system consists of only two blocks and does not require the presence of ASR module. The first block is a universal phone recognition system, and the second block is a Transformer-based language model for phones. We verify the effectiveness of the system on an intent classification dataset in Mandarin Chinese.