pwc-archive/papers-with-abstracts huggingface dataset:
Gradient Frequency Modulation for Visually Explaining Video Understanding Models
Authors: Xinmiao Lin, Wentao Bao, Matthew Wright, Yu Kong
Date: 2021-11-01 00:00:00
Tasks: Action Recognition, Temporal Action Localization, Video Understanding

In many applications, it is essential to understand why a machine learning model makes the decisions it does, but this is inhibited by the black-box nature of state-of-the-art neural networks. Because of this, increasing attention has been paid to explainability in deep learning, including in the area of video understanding. Due to the temporal dimension of video data, the main challenge of explaining a video action recognition model is to produce spatiotemporally consistent visual explanations, which has been ignored in the existing literature. In this paper, we propose Frequency-based Extremal Perturbation (F-EP) to explain a video understanding model's decisions. Because the explanations given by perturbation methods are noisy and non-smooth both spatially and temporally, we propose to modulate the frequencies of gradient maps from the neural network model with a Discrete Cosine Transform (DCT). We show in a range of experiments that F-EP provides more spatiotemporally consistent explanations that more faithfully represent the model's decisions compared to the existing state-of-the-art methods.
Arch-Net: Model Distillation for Architecture Agnostic Model Deployment
Authors: Weixin Xu, Zipeng Feng, Shuangkang Fang, Song Yuan, Yi Yang, Shuchang Zhou
Date: 2021-11-01 00:00:00
Tasks: image-classification, Image Classification, Machine Translation, model, Quantization, Translation

Vast requirement of computation power of Deep Neural Networks is a major hurdle to their real world applications. Many recent Application Specific Integrated Circuit (ASIC) chips feature dedicated hardware support for Neural Network Acceleration. However, as ASICs take multiple years to develop, they are inevitably out-paced by the latest development in Neural Architecture Research. For example, Transformer Networks do not have native support on many popular chips, and hence are difficult to deploy. In this paper, we propose Arch-Net, a family of Neural Networks made up of only operators efficiently supported across most architectures of ASICs. When a Arch-Net is produced, less common network constructs, like Layer Normalization and Embedding Layers, are eliminated in a progressive manner through label-free Blockwise Model Distillation, while performing sub-eight bit quantization at the same time to maximize performance. Empirical results on machine translation and image classification tasks confirm that we can transform latest developed Neural Architectures into fast running and as-accurate Arch-Net, ready for deployment on multiple mass-produced ASIC chips. The code will be available at https://github.com/megvii-research/Arch-Net.
Comparing Bayesian Models for Organ Contouring in Head and Neck Radiotherapy
Authors: Prerak Mody, Nicolas Chaves-de-Plaza, Klaus Hildebrandt, Rene van Egmond, Huib de Ridder, Marius Staring
Date: 2021-11-01 00:00:00

Deep learning models for organ contouring in radiotherapy are poised for clinical usage, but currently, there exist few tools for automated quality assessment (QA) of the predicted contours. Using Bayesian models and their associated uncertainty, one can potentially automate the process of detecting inaccurate predictions. We investigate two Bayesian models for auto-contouring, DropOut and FlipOut, using a quantitative measure - expected calibration error (ECE) and a qualitative measure - region-based accuracy-vs-uncertainty (R-AvU) graphs. It is well understood that a model should have low ECE to be considered trustworthy. However, in a QA context, a model should also have high uncertainty in inaccurate regions and low uncertainty in accurate regions. Such behaviour could direct visual attention of expert users to potentially inaccurate regions, leading to a speed up in the QA process. Using R-AvU graphs, we qualitatively compare the behaviour of different models in accurate and inaccurate regions. Experiments are conducted on the MICCAI2015 Head and Neck Segmentation Challenge and on the DeepMindTCIA CT dataset using three models: DropOut-DICE, Dropout-CE (Cross Entropy) and FlipOut-CE. Quantitative results show that DropOut-DICE has the highest ECE, while Dropout-CE and FlipOut-CE have the lowest ECE. To better understand the difference between DropOut-CE and FlipOut-CE, we use the R-AvU graph which shows that FlipOut-CE has better uncertainty coverage in inaccurate regions than DropOut-CE. Such a combination of quantitative and qualitative metrics explores a new approach that helps to select which model can be deployed as a QA tool in clinical settings.
Sub-cortical structure segmentation database for young population
Authors: Jayanthi Sivaswamy, Alphin J Thottupattu, Mythri V, Raghav Mehta, R Sheelakumari, Chandrasekharan Kesavadas
Date: 2021-11-01 00:00:00
Tasks: Brain Segmentation, Deep Learning, Segmentation

Segmentation of sub-cortical structures from MRI scans is of interest in many neurological diagnosis. Since this is a laborious task machine learning and specifically deep learning (DL) methods have become explored. The structural complexity of the brain demands a large, high quality segmentation dataset to develop good DL-based solutions for sub-cortical structure segmentation. Towards this, we are releasing a set of 114, 1.5 Tesla, T1 MRI scans with manual delineations for 14 sub-cortical structures. The scans in the dataset were acquired from healthy young (21-30 years) subjects ( 58 male and 56 female) and all the structures are manually delineated by experienced radiology experts. Segmentation experiments have been conducted with this dataset and results demonstrate that accurate results can be obtained with deep-learning methods. Our sub-cortical structure segmentation dataset, Indian Brain Segmentation Dataset (IBSD) is made openly available at \url{https://doi.org/10.5281/zenodo.5656776}.
PointNu-Net: Keypoint-assisted Convolutional Neural Network for Simultaneous Multi-tissue Histology Nuclei Segmentation and Classification
Authors: Kai Yao, Kaizhu Huang, Jie Sun, Amir Hussain
Date: 2021-11-01 00:00:00
Tasks: Classification, Diversity, Instance Segmentation, Keypoint Estimation, Multi-tissue Nucleus Segmentation, Segmentation, Semantic Segmentation

Automatic nuclei segmentation and classification play a vital role in digital pathology. However, previous works are mostly built on data with limited diversity and small sizes, making the results questionable or misleading in actual downstream tasks. In this paper, we aim to build a reliable and robust method capable of dealing with data from the 'the clinical wild'. Specifically, we study and design a new method to simultaneously detect, segment, and classify nuclei from Haematoxylin and Eosin (H&E) stained histopathology data, and evaluate our approach using the recent largest dataset: PanNuke. We address the detection and classification of each nuclei as a novel semantic keypoint estimation problem to determine the center point of each nuclei. Next, the corresponding class-agnostic masks for nuclei center points are obtained using dynamic instance segmentation. Meanwhile, we proposed a novel Joint Pyramid Fusion Module (JPFM) to model the cross-scale dependencies, thus enhancing the local feature for better nuclei detection and classification. By decoupling two simultaneous challenging tasks and taking advantage of JPFM, our method can benefit from class-aware detection and class-agnostic segmentation, thus leading to a significant performance boost. We demonstrate the superior performance of our proposed approach for nuclei segmentation and classification across 19 different tissue types, delivering new benchmark results.
Comprehensive and Clinically Accurate Head and Neck Organs at Risk Delineation via Stratified Deep Learning: A Large-scale Multi-Institutional Study
Authors: Dazhou Guo, Jia Ge, Xianghua Ye, Senxiang Yan, Yi Xin, Yuchen Song, Bing-shen Huang, Tsung-Min Hung, Zhuotun Zhu, Ling Peng, Yanping Ren, Rui Liu, Gong Zhang, Mengyuan Mao, Xiaohua Chen, Zhongjie Lu, Wenxiang Li, Yuzhen Chen, Lingyun Huang, Jing Xiao, Adam P. Harrison, Le Lu, Chien-Yu Lin, Dakai Jin, Tsung-Ying Ho
Date: 2021-11-01 00:00:00
Tasks: Neural Architecture Search, Segmentation

Accurate organ at risk (OAR) segmentation is critical to reduce the radiotherapy post-treatment complications. Consensus guidelines recommend a set of more than 40 OARs in the head and neck (H&N) region, however, due to the predictable prohibitive labor-cost of this task, most institutions choose a substantially simplified protocol by delineating a smaller subset of OARs and neglecting the dose distributions associated with other OARs. In this work we propose a novel, automated and highly effective stratified OAR segmentation (SOARS) system using deep learning to precisely delineate a comprehensive set of 42 H&N OARs. SOARS stratifies 42 OARs into anchor, mid-level, and small & hard subcategories, with specifically derived neural network architectures for each category by neural architecture search (NAS) principles. We built SOARS models using 176 training patients in an internal institution and independently evaluated on 1327 external patients across six different institutions. It consistently outperformed other state-of-the-art methods by at least 3-5% in Dice score for each institutional evaluation (up to 36% relative error reduction in other metrics). More importantly, extensive multi-user studies evidently demonstrated that 98% of the SOARS predictions need only very minor or no revisions for direct clinical acceptance (saving 90% radiation oncologists workload), and their segmentation and dosimetric accuracy are within or smaller than the inter-user variation. These findings confirmed the strong clinical applicability of SOARS for the OAR delineation process in H&N cancer radiotherapy workflows, with improved efficiency, comprehensiveness, and quality.
Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging
Authors: Andriy Myronenko, Ziyue Xu, Dong Yang, Holger Roth, Daguang Xu
Date: 2021-11-01 00:00:00
Tasks: Multiple Instance Learning, whole slide images

Multiple instance learning (MIL) is a key algorithm for classification of whole slide images (WSI). Histology WSIs can have billions of pixels, which create enormous computational and annotation challenges. Typically, such images are divided into a set of patches (a bag of instances), where only bag-level class labels are provided. Deep learning based MIL methods calculate instance features using convolutional neural network (CNN). Our proposed approach is also deep learning based, with the following two contributions: Firstly, we propose to explicitly account for dependencies between instances during training by embedding self-attention Transformer blocks to capture dependencies between instances. For example, a tumor grade may depend on the presence of several particular patterns at different locations in WSI, which requires to account for dependencies between patches. Secondly, we propose an instance-wise loss function based on instance pseudo-labels. We compare the proposed algorithm to multiple baseline methods, evaluate it on the PANDA challenge dataset, the largest publicly available WSI dataset with over 11K images, and demonstrate state-of-the-art results.
Rethinking the Knowledge Distillation From the Perspective of Model Calibration
Authors: Lehan Yang, Jincen Song
Date: 2021-10-31 00:00:00
Tasks: Knowledge Distillation

Recent years have witnessed dramatically improvements in the knowledge distillation, which can generate a compact student model for better efficiency while retaining the model effectiveness of the teacher model. Previous studies find that: more accurate teachers do not necessary make for better teachers due to the mismatch of abilities. In this paper, we aim to analysis the phenomenon from the perspective of model calibration. We found that the larger teacher model may be too over-confident, thus the student model cannot effectively imitate. While, after the simple model calibration of the teacher model, the size of the teacher model has a positive correlation with the performance of the student model.
Progressive observation of Covid-19 vaccination effects on skin-cellular structures by use of Intelligent Laser Speckle Classification (ILSC)
Authors: Ahmet Orun, Fatih Kurugollu
Date: 2021-10-31 00:00:00

We have made a progressive observation of Covid-19 Astra Zeneca Vaccination effect on Skin cellular network and properties by use of well established Intelligent Laser Speckle Classification (ILSC) image based technique and managed to distinguish between three different subjects groups via their laser speckle skin image samplings such as early-vaccinated, late-vaccinated and non-vaccinated individuals. The results have proven that the ILSC technique in association with the optimised Bayesian network is capable of classifying skin changes of vaccinated and non-vaccinated individuals and also of detecting progressive development made on skin cellular properties for a month period.
Overcoming Catastrophic Forgetting in Incremental Few-Shot Learning by Finding Flat Minima
Authors: Guangyuan Shi, Jiaxin Chen, Wenlong Zhang, Li-Ming Zhan, Xiao-Ming Wu
Date: 2021-10-30 00:00:00
Proceeding: NeurIPS 2021 12
Tasks: Few-Shot Class-Incremental Learning, Few-Shot Learning, Incremental Learning

This paper considers incremental few-shot learning, which requires a model to continually recognize new categories with only a few examples provided. Our study shows that existing methods severely suffer from catastrophic forgetting, a well-known problem in incremental learning, which is aggravated due to data scarcity and imbalance in the few-shot setting. Our analysis further suggests that to prevent catastrophic forgetting, actions need to be taken in the primitive stage -- the training of base classes instead of later few-shot learning sessions. Therefore, we propose to search for flat local minima of the base training objective function and then fine-tune the model parameters within the flat region on new tasks. In this way, the model can efficiently learn new classes while preserving the old ones. Comprehensive experimental results demonstrate that our approach outperforms all prior state-of-the-art methods and is very close to the approximate upper bound. The source code is available at https://github.com/moukamisama/F2M.
Saliency detection with moving camera via background model completion
Authors: Yupei Zhang, Kwok-Leung Chan
Date: 2021-10-30 00:00:00
Tasks: Foreground Segmentation, Saliency Detection

To detect saliency in video is a fundamental step in many computer vision systems. Saliency is the significant target(s) in the video. The object of interest is further analyzed for high-level applications. The segregation of saliency and the background can be made if they exhibit different visual cues. Therefore, saliency detection is often formulated as background subtraction. However, saliency detection is challenging. For instance, dynamic background can result in false positive errors. In another scenario, camouflage will lead to false negative errors. With moving camera, the captured scenes are even more complicated to handle. We propose a new framework, called saliency detection via background model completion (SD-BMC), that comprises of a background modeler and the deep learning background/foreground segmentation network. The background modeler generates an initial clean background image from a short image sequence. Based on the idea of video completion, a good background frame can be synthesized with the co-existence of changing background and moving objects. We adopt the background/foreground segmenter, although pre-trained with a specific video dataset, can also detect saliency in unseen videos. The background modeler can adjust the background image dynamically when the background/foreground segmenter output deteriorates during processing of a long video. To the best of our knowledge, our framework is the first one to adopt video completion for background modeling and saliency detection in videos captured by moving camera. The results, obtained from the PTZ videos, show that our proposed framework outperforms some deep learning-based background subtraction models by 11% or more. With more challenging videos, our framework also outperforms many high ranking background subtraction methods by more than 3%.
A Recommendation System to Enhance Midwives' Capacities in Low-Income Countries
Authors: Anna Guitart, Afsaneh Heydari, Eniola Olaleye, Jelena Ljubicic, Ana Fernández del Río, África Periáñez, Lauren Bellhouse
Date: 2021-11-02 00:00:00

Maternal and child mortality is a public health problem that disproportionately affects low- and middle-income countries. Every day, 800 women and 6,700 newborns die from complications related to pregnancy or childbirth. And for every maternal death, about 20 women suffer serious birth injuries. However, nearly all of these deaths and negative health outcomes are preventable. Midwives are key to revert this situation, and thus it is essential to strengthen their capacities and the quality of their education. This is the aim of the Safe Delivery App, a digital job aid and learning tool to enhance the knowledge, confidence and skills of health practitioners. Here, we use the behavioral logs of the App to implement a recommendation system that presents each midwife with suitable contents to continue gaining expertise. We focus on predicting the click-through rate, the probability that a given user will click on a recommended content. We evaluate four deep learning models and show that all of them produce highly accurate predictions.
A Framework for Real-World Multi-Robot Systems Running Decentralized GNN-Based Policies
Authors: Jan Blumenkamp, Steven Morad, Jennifer Gielis, QingBiao Li, Amanda Prorok
Date: 2021-11-02 00:00:00

GNNs are a paradigm-shifting neural architecture to facilitate the learning of complex multi-agent behaviors. Recent work has demonstrated remarkable performance in tasks such as flocking, multi-agent path planning and cooperative coverage. However, the policies derived through GNN-based learning schemes have not yet been deployed to the real-world on physical multi-robot systems. In this work, we present the design of a system that allows for fully decentralized execution of GNN-based policies. We create a framework based on ROS2 and elaborate its details in this paper. We demonstrate our framework on a case-study that requires tight coordination between robots, and present first-of-a-kind results that show successful real-world deployment of GNN-based policies on a decentralized multi-robot system relying on Adhoc communication. A video demonstration of this case-study, as well as the accompanying source code repository, can be found online. https://www.youtube.com/watch?v=COh-WLn4iO4 https://github.com/proroklab/ros2_multi_agent_passage https://github.com/proroklab/rl_multi_agent_passage
Data-Driven System Identification of 6-DoF Ship Motion in Waves with Neural Networks
Authors: Kevin M. Silva, Kevin J. Maki
Date: 2021-11-02 00:00:00
Tasks: Decision Making, Motion Forecasting

Critical evaluation and understanding of ship responses in the ocean is important for not only the design and engineering of future platforms but also the operation and safety of those that are currently deployed. Simulations or experiments are typically performed in nominal sea conditions during ship design or prior to deployment and the results may not be reflective of the instantaneous state of the vessel and the ocean environment while deployed. Short-term temporal predictions of ship responses given the current wave environment and ship state would enable enhanced decision-making onboard for both manned and unmanned vessels. However, the current state-of-the-art in numerical hydrodynamic simulation tools are too computationally expensive to be employed for real-time ship motion forecasting and the computationally efficient tools are too low fidelity to provide accurate responses. A methodology is developed with long short-term memory (LSTM) neural networks to represent the motions of a free running David Taylor Model Basin (DTMB) 5415 destroyer operating at 20 knots in Sea State 7 stern-quartering irregular seas. Case studies are performed for both course-keeping and turning circle scenarios. An estimate of the vessel's encounter frame is made with the trajectories observed in the training dataset. Wave elevation time histories are given by artificial wave probes that travel with the estimated encounter frame and serve as input into the neural network, while the output is the 6-DOF temporal ship motion response. Overall, the neural network is able to predict the temporal response of the ship due to unseen waves accurately, which makes this methodology suitable for system identification and real-time ship motion forecasting. The methodology, the dependence of model accuracy on wave probe and training data quantity and the estimated encounter frame are all detailed.
Nearly Optimal Algorithms for Level Set Estimation
Authors: Blake Mason, Romain Camilleri, Subhojyoti Mukherjee, Kevin Jamieson, Robert Nowak, Lalit Jain
Date: 2021-11-02 00:00:00
Tasks: Experimental Design

The level set estimation problem seeks to find all points in a domain ${\cal X}$ where the value of an unknown function $f:{\cal X}\rightarrow \mathbb{R}$ exceeds a threshold $\alpha$. The estimation is based on noisy function evaluations that may be acquired at sequentially and adaptively chosen locations in ${\cal X}$. The threshold value $\alpha$ can either be \emph{explicit} and provided a priori, or \emph{implicit} and defined relative to the optimal function value, i.e. $\alpha = (1-\epsilon)f(x_\ast)$ for a given $\epsilon > 0$ where $f(x_\ast)$ is the maximal function value and is unknown. In this work we provide a new approach to the level set estimation problem by relating it to recent adaptive experimental design methods for linear bandits in the Reproducing Kernel Hilbert Space (RKHS) setting. We assume that $f$ can be approximated by a function in the RKHS up to an unknown misspecification and provide novel algorithms for both the implicit and explicit cases in this setting with strong theoretical guarantees. Moreover, in the linear (kernel) setting, we show that our bounds are nearly optimal, namely, our upper bounds match existing lower bounds for threshold linear bandits. To our knowledge this work provides the first instance-dependent, non-asymptotic upper bounds on sample complexity of level-set estimation that match information theoretic lower bounds.