pwc-archive/papers-with-abstracts huggingface dataset:
Advanced Graph and Sequence Neural Networks for Molecular Property Prediction and Drug Discovery
Authors: Zhengyang Wang, Meng Liu, Youzhi Luo, Zhao Xu, Yaochen Xie, Limei Wang, Lei Cai, Qi Qi, Zhuoning Yuan, Tianbao Yang, Shuiwang Ji
Date: 2020-12-02 00:00:00
Tasks: BIG-bench Machine Learning, Drug Discovery, Molecular Property Prediction, Property Prediction

Properties of molecules are indicative of their functions and thus are useful in many applications. With the advances of deep learning methods, computational approaches for predicting molecular properties are gaining increasing momentum. However, there lacks customized and advanced methods and comprehensive tools for this task currently. Here we develop a suite of comprehensive machine learning methods and tools spanning different computational models, molecular representations, and loss functions for molecular property prediction and drug discovery. Specifically, we represent molecules as both graphs and sequences. Built on these representations, we develop novel deep models for learning from molecular graphs and sequences. In order to learn effectively from highly imbalanced datasets, we develop advanced loss functions that optimize areas under precision-recall curves. Altogether, our work not only serves as a comprehensive tool, but also contributes towards developing novel and advanced graph and sequence learning methodologies. Results on both online and offline antibiotics discovery and molecular property prediction tasks show that our methods achieve consistent improvements over prior methods. In particular, our methods achieve #1 ranking in terms of both ROC-AUC and PRC-AUC on the AI Cures Open Challenge for drug discovery related to COVID-19. Our software is released as part of the MoleculeX library under AdvProp.
Detection of False-Reading Attacks in the AMI Net-Metering System
Authors: Mahmoud M. Badr, Mohamed I. Ibrahem, Mohamed Mahmoud, Mostafa M. Fouda, Waleed Alasmary
Date: 2020-12-02 00:00:00
Tasks: energy management, Management

In smart grid, malicious customers may compromise their smart meters (SMs) to report false readings to achieve financial gains illegally. Reporting false readings not only causes hefty financial losses to the utility but may also degrade the grid performance because the reported readings are used for energy management. This paper is the first work that investigates this problem in the net-metering system, in which one SM is used to report the difference between the power consumed and the power generated. First, we prepare a benign dataset for the net-metering system by processing a real power consumption and generation dataset. Then, we propose a new set of attacks tailored for the net-metering system to create malicious dataset. After that, we analyze the data and we found time correlations between the net meter readings and correlations between the readings and relevant data obtained from trustworthy sources such as the solar irradiance and temperature. Based on the data analysis, we propose a general multi-data-source deep hybrid learning-based detector to identify the false-reading attacks. Our detector is trained on net meter readings of all customers besides data from the trustworthy sources to enhance the detector performance by learning the correlations between them. The rationale here is that although an attacker can report false readings, he cannot manipulate the solar irradiance and temperature values because they are beyond his control. Extensive experiments have been conducted, and the results indicate that our detector can identify the false-reading attacks with high detection rate and low false alarm.
RotNet: Fast and Scalable Estimation of Stellar Rotation Periods Using Convolutional Neural Networks
Authors: J. Emmanuel Johnson, Sairam Sundaresan, Tansu Daylan, Lisseth Gavilan, Daniel K. Giles, Stela Ishitani Silva, Anna Jungbluth, Brett Morris, Andrés Muñoz-Jaramillo
Date: 2020-12-02 00:00:00
Tasks: Feature Engineering, Time Series, Time Series Analysis, Transfer Learning

Magnetic activity in stars manifests as dark spots on their surfaces that modulate the brightness observed by telescopes. These light curves contain important information on stellar rotation. However, the accurate estimation of rotation periods is computationally expensive due to scarce ground truth information, noisy data, and large parameter spaces that lead to degenerate solutions. We harness the power of deep learning and successfully apply Convolutional Neural Networks to regress stellar rotation periods from Kepler light curves. Geometry-preserving time-series to image transformations of the light curves serve as inputs to a ResNet-18 based architecture which is trained through transfer learning. The McQuillan catalog of published rotation periods is used as ansatz to groundtruth. We benchmark the performance of our method against a random forest regressor, a 1D CNN, and the Auto-Correlation Function (ACF) - the current standard to estimate rotation periods. Despite limiting our input to fewer data points (1k), our model yields more accurate results and runs 350 times faster than ACF runs on the same number of data points and 10,000 times faster than ACF runs on 65k data points. With only minimal feature engineering our approach has impressive accuracy, motivating the application of deep learning to regress stellar parameters on an even larger scale
SoK: Exploring the State of the Art and the Future Potential of Artificial Intelligence in Digital Forensic Investigation
Authors: Xiaoyu Du, Chris Hargreaves, John Sheppard, Felix Anda, Asanka Sayakkara, Nhien-An Le-Khac, Mark Scanlon
Date: 2020-12-02 00:00:00

Multi-year digital forensic backlogs have become commonplace in law enforcement agencies throughout the globe. Digital forensic investigators are overloaded with the volume of cases requiring their expertise compounded by the volume of data to be processed. Artificial intelligence is often seen as the solution to many big data problems. This paper summarises existing artificial intelligence based tools and approaches in digital forensics. Automated evidence processing leveraging artificial intelligence based techniques shows great promise in expediting the digital forensic analysis process while increasing case processing capacities. For each application of artificial intelligence highlighted, a number of current challenges and future potential impact is discussed.
End to End ASR System with Automatic Punctuation Insertion
Authors: Yushi Guan
Date: 2020-12-03 00:00:00
Tasks: Automatic Speech Recognition, Automatic Speech Recognition (ASR), speech-recognition, Speech Recognition, Speech-to-Text

Recent Automatic Speech Recognition systems have been moving towards end-to-end systems that can be trained together. Numerous techniques that have been proposed recently enabled this trend, including feature extraction with CNNs, context capturing and acoustic feature modeling with RNNs, automatic alignment of input and output sequences using Connectionist Temporal Classifications, as well as replacing traditional n-gram language models with RNN Language Models. Historically, there has been a lot of interest in automatic punctuation in textual or speech to text context. However, there seems to be little interest in incorporating automatic punctuation into the emerging neural network based end-to-end speech recognition systems, partially due to the lack of English speech corpus with punctuated transcripts. In this study, we propose a method to generate punctuated transcript for the TEDLIUM dataset using transcripts available from ted.com. We also propose an end-to-end ASR system that outputs words and punctuations concurrently from speech signals. Combining Damerau Levenshtein Distance and slot error rate into DLev-SER, we enable measurement of punctuation error rate when the hypothesis text is not perfectly aligned with the reference. Compared with previous methods, our model reduces slot error rate from 0.497 to 0.341.
Predicting Early Indicators of Cognitive Decline from Verbal Utterances
Authors: Swati Padhee, Anurag Illendula, Megan Sadler, Valerie L. Shalin, Tanvi Banerjee, Krishnaprasad Thirunarayan, William L. Romine
Date: 2020-11-19 00:00:00

Dementia is a group of irreversible, chronic, and progressive neurodegenerative disorders resulting in impaired memory, communication, and thought processes. In recent years, clinical research advances in brain aging have focused on the earliest clinically detectable stage of incipient dementia, commonly known as mild cognitive impairment (MCI). Currently, these disorders are diagnosed using a manual analysis of neuropsychological examinations. We measure the feasibility of using the linguistic characteristics of verbal utterances elicited during neuropsychological exams of elderly subjects to distinguish between elderly control groups, people with MCI, people diagnosed with possible Alzheimer's disease (AD), and probable AD. We investigated the performance of both theory-driven psycholinguistic features and data-driven contextual language embeddings in identifying different clinically diagnosed groups. Our experiments show that a combination of contextual and psycholinguistic features extracted by a Support Vector Machine improved distinguishing the verbal utterances of elderly controls, people with MCI, possible AD, and probable AD. This is the first work to identify four clinical diagnosis groups of dementia in a highly imbalanced dataset. Our work shows that machine learning algorithms built on contextual and psycholinguistic features can learn the linguistic biomarkers from verbal utterances and assist clinical diagnosis of different stages and types of dementia, even with limited data.
Bayesian Graph Neural Networks for Molecular Property Prediction
Authors: George Lamb, Brooks Paige
Date: 2020-11-25 00:00:00
Tasks: Molecular Property Prediction, Prediction, Property Prediction, regression

Graph neural networks for molecular property prediction are frequently underspecified by data and fail to generalise to new scaffolds at test time. A potential solution is Bayesian learning, which can capture our uncertainty in the model parameters. This study benchmarks a set of Bayesian methods applied to a directed MPNN, using the QM9 regression dataset. We find that capturing uncertainty in both readout and message passing parameters yields enhanced predictive accuracy, calibration, and performance on a downstream molecular search task.
Performance Indicators Contributing To Success At The Group And Play-Off Stages Of The 2019 Rugby World Cup
Authors: Rory Bunker, Kirsten Spencer
Date: 2020-10-29 00:00:00

Performance indicators that contributed to success at the group stage and play-off stages of the 2019 Rugby World Cup were analysed using publicly available data obtained from the official tournament website using both a non-parametric statistical technique, Wilcoxon's signed rank test, and a decision rules technique from machine learning called RIPPER. Our statistical results found that ball carry effectiveness (percentage of ball carries that penetrated the opposition gain-line) and total metres gained (kick metres plus carry metres) were found to contribute to success at both stages of the tournament and that indicators that contributed to success during the group stages (dominating possession, making more ball carries, making more passes, winning more rucks, and making less tackles) did not contribute to success at the play-off stage. Our results using RIPPER found that low ball carries and a low lineout success percentage jointly contributed to losing at the group stage, while winning a low number of rucks and carrying over the gain-line a sufficient number of times contributed to winning at the play-off stage of the tournament. The results emphasise the need for teams to adapt their playing strategies from the group stage to the play-off stage at tournament in order to be successful.
Deep Inverse Sensor Models as Priors for evidential Occupancy Mapping
Authors: Daniel Bauer, Lars Kuhnert, Lutz Eckstein
Date: 2020-12-02 00:00:00
Tasks: Autonomous Driving

With the recent boost in autonomous driving, increased attention has been paid on radars as an input for occupancy mapping. Besides their many benefits, the inference of occupied space based on radar detections is notoriously difficult because of the data sparsity and the environment dependent noise (e.g. multipath reflections). Recently, deep learning-based inverse sensor models, from here on called deep ISMs, have been shown to improve over their geometric counterparts in retrieving occupancy information. Nevertheless, these methods perform a data-driven interpolation which has to be verified later on in the presence of measurements. In this work, we describe a novel approach to integrate deep ISMs together with geometric ISMs into the evidential occupancy mapping framework. Our method leverages both the capabilities of the data-driven approach to initialize cells not yet observable for the geometric model effectively enhancing the perception field and convergence speed, while at the same time use the precision of the geometric ISM to converge to sharp boundaries. We further define a lower limit on the deep ISM estimate's certainty together with analytical proofs of convergence which we use to distinguish cells that are solely allocated by the deep ISM from cells already verified using the geometric approach.
ArCorona: Analyzing Arabic Tweets in the Early Days of Coronavirus (COVID-19) Pandemic
Authors: Hamdy Mubarak, Sabit Hassan
Date: 2020-12-02 00:00:00
Proceeding: EACL (Louhi) 2021 4
Tasks: Misinformation

Over the past few months, there were huge numbers of circulating tweets and discussions about Coronavirus (COVID-19) in the Arab region. It is important for policy makers and many people to identify types of shared tweets to better understand public behavior, topics of interest, requests from governments, sources of tweets, etc. It is also crucial to prevent spreading of rumors and misinformation about the virus or bad cures. To this end, we present the largest manually annotated dataset of Arabic tweets related to COVID-19. We describe annotation guidelines, analyze our dataset and build effective machine learning and transformer based models for classification.
TAN-NTM: Topic Attention Networks for Neural Topic Modeling
Authors: Madhur Panwar, Shashank Shailabh, Milan Aggarwal, Balaji Krishnamurthy
Date: 2020-12-02 00:00:00
Proceeding: ACL 2021 5
Tasks: Document Classification, Keyphrase Generation, Topic Models, Variational Inference

Topic models have been widely used to learn text representations and gain insight into document corpora. To perform topic discovery, most existing neural models either take document bag-of-words (BoW) or sequence of tokens as input followed by variational inference and BoW reconstruction to learn topic-word distribution. However, leveraging topic-word distribution for learning better features during document encoding has not been explored much. To this end, we develop a framework TAN-NTM, which processes document as a sequence of tokens through a LSTM whose contextual outputs are attended in a topic-aware manner. We propose a novel attention mechanism which factors in topic-word distribution to enable the model to attend on relevant words that convey topic related cues. The output of topic attention module is then used to carry out variational inference. We perform extensive ablations and experiments resulting in ~9-15 percentage improvement over score of existing SOTA topic models in NPMI coherence on several benchmark datasets - 20Newsgroups, Yelp Review Polarity and AGNews. Further, we show that our method learns better latent document-topic features compared to existing topic models through improvement on two downstream tasks: document classification and topic guided keyphrase generation.
Federated Learning for Personalized Humor Recognition
Authors: Xu Guo, Han Yu, Boyang Li, Hao Wang, Pengwei Xing, Siwei Feng, Zaiqing Nie, Chunyan Miao
Date: 2020-12-03 00:00:00
Tasks: Diversity, Federated Learning, Language Modelling

Computational understanding of humor is an important topic under creative language understanding and modeling. It can play a key role in complex human-AI interactions. The challenge here is that human perception of humorous content is highly subjective. The same joke may receive different funniness ratings from different readers. This makes it highly challenging for humor recognition models to achieve personalization in practical scenarios. Existing approaches are generally designed based on the assumption that users have a consensus on whether a given text is humorous or not. Thus, they cannot handle diverse humor preferences well. In this paper, we propose the FedHumor approach for the recognition of humorous content in a personalized manner through Federated Learning (FL). Extending a pre-trained language model, FedHumor guides the fine-tuning process by considering diverse distributions of humor preferences from individuals. It incorporates a diversity adaptation strategy into the FL paradigm to train a personalized humor recognition model. To the best of our knowledge, FedHumor is the first text-based personalized humor recognition model through federated learning. Extensive experiments demonstrate the advantage of FedHumor in recognizing humorous texts compared to nine state-of-the-art humor recognition approaches with superior capability for handling the diversity in humor labels produced by users with diverse preferences.
Multilingual Neural RST Discourse Parsing
Authors: Zhengyuan Liu, Ke Shi, Nancy F. Chen
Date: 2020-12-03 00:00:00
Proceeding: COLING 2020 8
Tasks: Discourse Parsing, Translation

Text discourse parsing plays an important role in understanding information flow and argumentative structure in natural language. Previous research under the Rhetorical Structure Theory (RST) has mostly focused on inducing and evaluating models from the English treebank. However, the parsing tasks for other languages such as German, Dutch, and Portuguese are still challenging due to the shortage of annotated data. In this work, we investigate two approaches to establish a neural, cross-lingual discourse parser via: (1) utilizing multilingual vector representations; and (2) adopting segment-level translation of the source content. Experiment results show that both methods are effective even with limited training data, and achieve state-of-the-art performance on cross-lingual, document-level discourse parsing on all sub-tasks.
Self-Explaining Structures Improve NLP Models
Authors: Zijun Sun, Chun Fan, Qinghong Han, Xiaofei Sun, Yuxian Meng, Fei Wu, Jiwei Li
Date: 2020-12-03 00:00:00
Tasks: Natural Language Inference, Paraphrase Identification, Sentiment Analysis

Existing approaches to explaining deep learning models in NLP usually suffer from two major drawbacks: (1) the main model and the explaining model are decoupled: an additional probing or surrogate model is used to interpret an existing model, and thus existing explaining tools are not self-explainable; (2) the probing model is only able to explain a model's predictions by operating on low-level features by computing saliency scores for individual words but are clumsy at high-level text units such as phrases, sentences, or paragraphs. To deal with these two issues, in this paper, we propose a simple yet general and effective self-explaining framework for deep learning models in NLP. The key point of the proposed framework is to put an additional layer, as is called by the interpretation layer, on top of any existing NLP model. This layer aggregates the information for each text span, which is then associated with a specific weight, and their weighted combination is fed to the softmax function for the final prediction. The proposed model comes with the following merits: (1) span weights make the model self-explainable and do not require an additional probing model for interpretation; (2) the proposed model is general and can be adapted to any existing deep learning structures in NLP; (3) the weight associated with each text span provides direct importance scores for higher-level text units such as phrases and sentences. We for the first time show that interpretability does not come at the cost of performance: a neural model of self-explaining features obtains better performances than its counterpart without the self-explaining nature, achieving a new SOTA performance of 59.1 on SST-5 and a new SOTA performance of 92.3 on SNLI.
Label Enhanced Event Detection with Heterogeneous Graph Attention Networks
Authors: Shiyao Cui, Bowen Yu, Xin Cong, Tingwen Liu, Quangang Li, Jinqiao Shi
Date: 2020-12-03 00:00:00
Tasks: Event Detection, Graph Attention, Sentence

Event Detection (ED) aims to recognize instances of specified types of event triggers in text. Different from English ED, Chinese ED suffers from the problem of word-trigger mismatch due to the uncertain word boundaries. Existing approaches injecting word information into character-level models have achieved promising progress to alleviate this problem, but they are limited by two issues. First, the interaction between characters and lexicon words is not fully exploited. Second, they ignore the semantic information provided by event labels. We thus propose a novel architecture named Label enhanced Heterogeneous Graph Attention Networks (L-HGAT). Specifically, we transform each sentence into a graph, where character nodes and word nodes are connected with different types of edges, so that the interaction between words and characters is fully reserved. A heterogeneous graph attention networks is then introduced to propagate relational message and enrich information interaction. Furthermore, we convert each label into a trigger-prototype-based embedding, and design a margin loss to guide the model distinguish confusing event labels. Experiments on two benchmark datasets show that our model achieves significant improvement over a range of competitive baseline methods.
Context in Informational Bias Detection
Authors: Esther van den Berg, Katja Markert
Date: 2020-12-03 00:00:00
Proceeding: COLING 2020 8
Tasks: Articles, Bias Detection, Sentence

Informational bias is bias conveyed through sentences or clauses that provide tangential, speculative or background information that can sway readers' opinions towards entities. By nature, informational bias is context-dependent, but previous work on informational bias detection has not explored the role of context beyond the sentence. In this paper, we explore four kinds of context for informational bias in English news articles: neighboring sentences, the full article, articles on the same event from other news publishers, and articles from the same domain (but potentially different events). We find that integrating event context improves classification performance over a very strong baseline. In addition, we perform the first error analysis of models on this task. We find that the best-performing context-inclusive model outperforms the baseline on longer sentences, and sentences from politically centrist articles.