pwc-archive/papers-with-abstracts huggingface dataset:
A Standardized Pipeline for Colon Nuclei Identification and Counting Challenge
Authors: Jijun Cheng, Xipeng Pan, Feihu Hou, Bingchao Zhao, Jiatai Lin, Zhenbing Liu, Zaiyi Liu, Chu Han
Date: 2022-03-01 00:00:00
Tasks: Classification, Data Augmentation, Nuclear Segmentation, Segmentation

Nuclear segmentation and classification is an essential step for computational pathology. TIA lab from Warwick University organized a nuclear segmentation and classification challenge (CoNIC) for H&E stained histopathology images in colorectal cancer with two highly correlated tasks, nuclei segmentation and classification task and cellular composition task. There are a few obstacles we have to address in this challenge, 1) limited training samples, 2) color variation, 3) imbalanced annotations, 4) similar morphological appearance among classes. To deal with these challenges, we proposed a standardized pipeline for nuclear segmentation and classification by integrating several pluggable components. First, we built a GAN-based model to automatically generate pseudo images for data augmentation. Then we trained a self-supervised stain normalization model to solve the color variation problem. Next we constructed a baseline model HoVer-Net with cost-sensitive loss to encourage the model pay more attention on the minority classes. According to the results of the leaderboard, our proposed pipeline achieves 0.40665 mPQ+ (Rank 49th) and 0.62199 r2 (Rank 10th) in the preliminary test phase.
Simultaneous Semantic and Instance Segmentation for Colon Nuclei Identification and Counting
Authors: Lihao Liu, Chenyang Hong, Angelica I. Aviles-Rivero, Carola-Bibiane Schönlieb
Date: 2022-03-01 00:00:00
Tasks: Instance Segmentation, Nuclear Segmentation, Segmentation, Semantic Segmentation

We address the problem of automated nuclear segmentation, classification, and quantification from Haematoxylin and Eosin stained histology images, which is of great relevance for several downstream computational pathology applications. In this work, we present a solution framed as a simultaneous semantic and instance segmentation framework. Our solution is part of the Colon Nuclei Identification and Counting (CoNIC) Challenge. We first train a semantic and instance segmentation model separately. Our framework uses as backbone HoverNet and Cascade Mask-RCNN models. We then ensemble the results with a custom Non-Maximum Suppression embedding (NMS). In our framework, the semantic model computes a class prediction for the cells whilst the instance model provides a refined segmentation. We demonstrate, through our experimental results, that our model outperforms the provided baselines by a large margin.
Spatiotemporal Transformer Attention Network for 3D Voxel Level Joint Segmentation and Motion Prediction in Point Cloud
Authors: Zhensong Wei, Xuewei Qi, Zhengwei Bai, Guoyuan Wu, Saswat Nayak, Peng Hao, Matthew Barth, Yongkang Liu, Kentaro Oguchi
Date: 2022-02-28 00:00:00
Tasks: motion prediction, Semantic Segmentation

Environment perception including detection, classification, tracking, and motion prediction are key enablers for automated driving systems and intelligent transportation applications. Fueled by the advances in sensing technologies and machine learning techniques, LiDAR-based sensing systems have become a promising solution. The current challenges of this solution are how to effectively combine different perception tasks into a single backbone and how to efficiently learn the spatiotemporal features directly from point cloud sequences. In this research, we propose a novel spatiotemporal attention network based on a transformer self-attention mechanism for joint semantic segmentation and motion prediction within a point cloud at the voxel level. The network is trained to simultaneously outputs the voxel level class and predicted motion by learning directly from a sequence of point cloud datasets. The proposed backbone includes both a temporal attention module (TAM) and a spatial attention module (SAM) to learn and extract the complex spatiotemporal features. This approach has been evaluated with the nuScenes dataset, and promising performance has been achieved.
Learning Cross-Video Neural Representations for High-Quality Frame Interpolation
Authors: Wentao Shangguan, Yu Sun, Weijie Gan, Ulugbek S. Kamilov
Date: 2022-02-28 00:00:00
Tasks: Video Frame Interpolation, Vocal Bursts Intensity Prediction

This paper considers the problem of temporal video interpolation, where the goal is to synthesize a new video frame given its two neighbors. We propose Cross-Video Neural Representation (CURE) as the first video interpolation method based on neural fields (NF). NF refers to the recent class of methods for the neural representation of complex 3D scenes that has seen widespread success and application across computer vision. CURE represents the video as a continuous function parameterized by a coordinate-based neural network, whose inputs are the spatiotemporal coordinates and outputs are the corresponding RGB values. CURE introduces a new architecture that conditions the neural network on the input frames for imposing space-time consistency in the synthesized video. This not only improves the final interpolation quality, but also enables CURE to learn a prior across multiple videos. Experimental evaluations show that CURE achieves the state-of-the-art performance on video interpolation on several benchmark datasets.
A Data-scalable Transformer for Medical Image Segmentation: Architecture, Model Efficiency, and Benchmark
Authors: Yunhe Gao, Mu Zhou, Di Liu, Zhennan Yan, Shaoting Zhang, Dimitris N. Metaxas
Date: 2022-02-28 00:00:00
Tasks: Image Segmentation, Inductive Bias, Medical Image Segmentation, Segmentation, Semantic Segmentation

Transformers have demonstrated remarkable performance in natural language processing and computer vision. However, existing vision Transformers struggle to learn from limited medical data and are unable to generalize on diverse medical image tasks. To tackle these challenges, we present MedFormer, a data-scalable Transformer designed for generalizable 3D medical image segmentation. Our approach incorporates three key elements: a desirable inductive bias, hierarchical modeling with linear-complexity attention, and multi-scale feature fusion that integrates spatial and semantic information globally. MedFormer can learn across tiny- to large-scale data without pre-training. Comprehensive experiments demonstrate MedFormer's potential as a versatile segmentation backbone, outperforming CNNs and vision Transformers on seven public datasets covering multiple modalities (e.g., CT and MRI) and various medical targets (e.g., healthy organs, diseased tissues, and tumors). We provide public access to our models and evaluation pipeline, offering solid baselines and unbiased comparisons to advance a wide range of downstream clinical applications.
BlazeNeo: Blazing fast polyp segmentation and neoplasm detection
Authors: Nguyen Sy An, Phan Ngoc Lan, Dao Viet Hang, Dao Van Long, Tran Quang Trung, Nguyen Thi Thuy, Dinh Viet Sang
Date: 2022-02-28 00:00:00
Proceeding: IEEE Access 2022 4
Tasks: Computational Efficiency, Medical Image Analysis, Medical Image Segmentation, Segmentation

In recent years, computer-aided automatic polyp segmentation and neoplasm detection have been an emerging topic in medical image analysis, providing valuable support to colonoscopy procedures. Attentions have been paid to improving the accuracy of polyp detection and segmentation. However, not much focus has been given to latency and throughput for performing these tasks on dedicated devices, which can be crucial for practical applications. This paper introduces a novel deep neural network architecture called BlazeNeo, for the task of polyp segmentation and neoplasm detection with an emphasis on compactness and speed while maintaining high accuracy. The model leverages the highly efficient HarDNet backbone alongside lightweight Receptive Field Blocks for computational efficiency, and an auxiliary training mechanism to take full advantage of the training data for the segmentation quality. Our experiments on a challenging dataset show that BlazeNeo achieves improvements in latency and model size while maintaining comparable accuracy against state-of-the-art methods. When deploying on the Jetson AGX Xavier edge device in INT8 precision, our BlazeNeo achieves over 155 fps while yielding the best accuracy among all compared methods.
Rectifying homographies for stereo vision: analytical solution for minimal distortion
Authors: Pasquale Lafiosca, Marta Ceccaroni
Date: 2022-02-28 00:00:00

Stereo rectification is the determination of two image transformations (or homographies) that map corresponding points on the two images, projections of the same point in the 3D space, onto the same horizontal line in the transformed images. Rectification is used to simplify the subsequent stereo correspondence problem and speeding up the matching process. Rectifying transformations, in general, introduce perspective distortion on the obtained images, which shall be minimised to improve the accuracy of the following algorithm dealing with the stereo correspondence problem. The search for the optimal transformations is usually carried out relying on numerical optimisation. This work proposes a closed-form solution for the rectifying homographies that minimise perspective distortion. The experimental comparison confirms its capability to solve the convergence issues of the previous formulation. Its Python implementation is provided.
Enhancing Satellite Imagery using Deep Learning for the Sensor To Shooter Timeline
Authors: Matthew Ciolino, Dominick Hambrick, David Noever
Date: 2022-02-28 00:00:00
Tasks: Cloud Removal, Image Manipulation, Super-Resolution

The sensor to shooter timeline is affected by two main variables: satellite positioning and asset positioning. Speeding up satellite positioning by adding more sensors or by decreasing processing time is important only if there is a prepared shooter, otherwise the main source of time is getting the shooter into position. However, the intelligence community should work towards the exploitation of sensors to the highest speed and effectiveness possible. Achieving a high effectiveness while keeping speed high is a tradeoff that must be considered in the sensor to shooter timeline. In this paper we investigate two main ideas, increasing the effectiveness of satellite imagery through image manipulation and how on-board image manipulation would affect the sensor to shooter timeline. We cover these ideas in four scenarios: Discrete Event Simulation of onboard processing versus ground station processing, quality of information with cloud cover removal, information improvement with super resolution, and data reduction with image to caption. This paper will show how image manipulation techniques such as Super Resolution, Cloud Removal, and Image to Caption will improve the quality of delivered information in addition to showing how those processes effect the sensor to shooter timeline.
The Right Spin: Learning Object Motion from Rotation-Compensated Flow Fields
Authors: Pia Bideau, Erik Learned-Miller, Cordelia Schmid, Karteek Alahari
Date: 2022-02-28 00:00:00
Tasks: Motion Segmentation

Both a good understanding of geometrical concepts and a broad familiarity with objects lead to our excellent perception of moving objects. The human ability to detect and segment moving objects works in the presence of multiple objects, complex background geometry, motion of the observer and even camouflage. How humans perceive moving objects so reliably is a longstanding research question in computer vision and borrows findings from related areas such as psychology, cognitive science and physics. One approach to the problem is to teach a deep network to model all of these effects. This contrasts with the strategy used by human vision, where cognitive processes and body design are tightly coupled and each is responsible for certain aspects of correctly identifying moving objects. Similarly from the computer vision perspective, there is evidence that classical, geometry-based techniques are better suited to the "motion-based" parts of the problem, while deep networks are more suitable for modeling appearance. In this work, we argue that the coupling of camera rotation and camera translation can create complex motion fields that are difficult for a deep network to untangle directly. We present a novel probabilistic model to estimate the camera's rotation given the motion field. We then rectify the flow field to obtain a rotation-compensated motion field for subsequent segmentation. This strategy of first estimating camera motion, and then allowing a network to learn the remaining parts of the problem, yields improved results on the widely used DAVIS benchmark as well as the recently published motion segmentation data set MoCA (Moving Camouflaged Animals).
Deep Camera Pose Regression Using Pseudo-LiDAR
Authors: Ali Raza, Lazar Lolic, Shahmir Akhter, Alfonso Dela Cruz, Michael Liut
Date: 2022-02-28 00:00:00
Tasks: 3D Object Detection, Autonomous Vehicles, Camera Localization, object-detection, Object Detection, regression

An accurate and robust large-scale localization system is an integral component for active areas of research such as autonomous vehicles and augmented reality. To this end, many learning algorithms have been proposed that predict 6DOF camera pose from RGB or RGB-D images. However, previous methods that incorporate depth typically treat the data the same way as RGB images, often adding depth maps as additional channels to RGB images and passing them through convolutional neural networks (CNNs). In this paper, we show that converting depth maps into pseudo-LiDAR signals, previously shown to be useful for 3D object detection, is a better representation for camera localization tasks by projecting point clouds that can accurately determine 6DOF camera pose. This is demonstrated by first comparing localization accuracies of a network operating exclusively on pseudo-LiDAR representations, with networks operating exclusively on depth maps. We then propose FusionLoc, a novel architecture that uses pseudo-LiDAR to regress a 6DOF camera pose. FusionLoc is a dual stream neural network, which aims to remedy common issues with typical 2D CNNs operating on RGB-D images. The results from this architecture are compared against various other state-of-the-art deep pose regression implementations using the 7 Scenes dataset. The findings are that FusionLoc performs better than a number of other camera localization methods, with a notable improvement being, on average, 0.33m and 4.35{\deg} more accurate than RGB-D PoseNet. By proving the validity of using pseudo-LiDAR signals over depth maps for localization, there are new considerations when implementing large-scale localization systems.
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
Authors: Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Shan E Ahmed Raza, Fayyaz Minhas, David Snead, Nasir Rajpoot
Date: 2022-02-28 00:00:00
Tasks: All, Cell Detection, Explainable Models, Image Segmentation, Multi-Task Learning, Semantic Segmentation, Transfer Learning, whole slide images

The recent surge in performance for image analysis of digitised pathology slides can largely be attributed to the advances in deep learning. Deep models can be used to initially localise various structures in the tissue and hence facilitate the extraction of interpretable features for biomarker discovery. However, these models are typically trained for a single task and therefore scale poorly as we wish to adapt the model for an increasing number of different tasks. Also, supervised deep learning models are very data hungry and therefore rely on large amounts of training data to perform well. In this paper, we present a multi-task learning approach for segmentation and classification of nuclei, glands, lumina and different tissue regions that leverages data from multiple independent data sources. While ensuring that our tasks are aligned by the same tissue type and resolution, we enable meaningful simultaneous prediction with a single network. As a result of feature sharing, we also show that the learned representation can be used to improve the performance of additional tasks via transfer learning, including nuclear classification and signet ring cell detection. As part of this work, we train our developed Cerberus model on a huge amount of data, consisting of over 600K objects for segmentation and 440K patches for classification. We use our approach to process 599 colorectal whole-slide images from TCGA, where we localise 377 million, 900K and 2.1 million nuclei, glands and lumina, respectively and make the results available to the community for downstream analysis.
Optimal Transport-based Graph Matching for 3D retinal OCT image registration
Authors: Xin Tian, Nantheera Anantrasirichai, Lindsay Nicholson, Alin Achim
Date: 2022-02-28 00:00:00
Tasks: Graph Matching, Image Registration

Registration of longitudinal optical coherence tomography (OCT) images assists disease monitoring and is essential in image fusion applications. Mouse retinal OCT images are often collected for longitudinal study of eye disease models such as uveitis, but their quality is often poor compared with human imaging. This paper presents a novel but efficient framework involving an optimal transport based graph matching (OT-GM) method for 3D mouse OCT image registration. We first perform registration of fundus-like images obtained by projecting all b-scans of a volume on a plane orthogonal to them, hereafter referred to as the x-y plane. We introduce Adaptive Weighted Vessel Graph Descriptors (AWVGD) and 3D Cube Descriptors (CD) to identify the correspondence between nodes of graphs extracted from segmented vessels within the OCT projection images. The AWVGD comprises scaling, translation and rotation, which are computationally efficient, whereas CD exploits 3D spatial and frequency domain information. The OT-GM method subsequently performs the correct alignment in the x-y plane. Finally, registration along the direction orthogonal to the x-y plane (the z-direction) is guided by the segmentation of two important anatomical features peculiar to mouse b-scans, the Internal Limiting Membrane (ILM) and the hyaloid remnant (HR). Both subjective and objective evaluation results demonstrate that our framework outperforms other well-established methods on mouse OCT images within a reasonable execution time.
ERF: Explicit Radiance Field Reconstruction From Scratch
Authors: Samir Aroudj, Steven Lovegrove, Eddy Ilg, Tanner Schmidt, Michael Goesele, Richard Newcombe
Date: 2022-02-28 00:00:00
Tasks: 3D Reconstruction

We propose a novel explicit dense 3D reconstruction approach that processes a set of images of a scene with sensor poses and calibrations and estimates a photo-real digital model. One of the key innovations is that the underlying volumetric representation is completely explicit in contrast to neural network-based (implicit) alternatives. We encode scenes explicitly using clear and understandable mappings of optimization variables to scene geometry and their outgoing surface radiance. We represent them using hierarchical volumetric fields stored in a sparse voxel octree. Robustly reconstructing such a volumetric scene model with millions of unknown variables from registered scene images only is a highly non-convex and complex optimization problem. To this end, we employ stochastic gradient descent (Adam) which is steered by an inverse differentiable renderer. We demonstrate that our method can reconstruct models of high quality that are comparable to state-of-the-art implicit methods. Importantly, we do not use a sequential reconstruction pipeline where individual steps suffer from incomplete or unreliable information from previous stages, but start our optimizations from uniformed initial solutions with scene geometry and radiance that is far off from the ground truth. We show that our method is general and practical. It does not require a highly controlled lab setup for capturing, but allows for reconstructing scenes with a vast variety of objects, including challenging ones, such as outdoor plants or furry toys. Finally, our reconstructed scene models are versatile thanks to their explicit design. They can be edited interactively which is computationally too costly for implicit alternatives.
Towards Targeted Change Detection with Heterogeneous Remote Sensing Images for Forest Mortality Mapping
Authors: Jørgen A. Agersborg, Luigi T. Luppino, Stian Normann Anfinsen, Jane Uhd Jepsen
Date: 2022-02-28 00:00:00
Tasks: Change Detection, Image-to-Image Translation, One-Class Classification, Translation

Several generic methods have recently been developed for change detection in heterogeneous remote sensing data, such as images from synthetic aperture radar (SAR) and multispectral radiometers. However, these are not well suited to detect weak signatures of certain disturbances of ecological systems. To resolve this problem we propose a new approach based on image-to-image translation and one-class classification (OCC). We aim to map forest mortality caused by an outbreak of geometrid moths in a sparsely forested forest-tundra ecotone using multisource satellite images. The images preceding and following the event are collected by Landsat-5 and RADARSAT-2, respectively. Using a recent deep learning method for change-aware image translation, we compute difference images in both satellites' respective domains. These differences are stacked with the original pre- and post-event images and passed to an OCC trained on a small sample from the targeted change class. The classifier produces a credible map of the complex pattern of forest mortality.
Local and Global GANs with Semantic-Aware Upsampling for Image Generation
Authors: Hao Tang, Ling Shao, Philip H. S. Torr, Nicu Sebe
Date: 2022-02-28 00:00:00
Tasks: Feature Upsampling, Image Generation

In this paper, we address the task of semantic-guided image generation. One challenge common to most existing image-level generation methods is the difficulty in generating small objects and detailed local textures. To address this, in this work we consider generating images using local context. As such, we design a local class-specific generative network using semantic maps as guidance, which separately constructs and learns subgenerators for different classes, enabling it to capture finer details. To learn more discriminative class-specific feature representations for the local generation, we also propose a novel classification module. To combine the advantages of both global image-level and local class-specific generation, a joint generation network is designed with an attention fusion module and a dual-discriminator structure embedded. Lastly, we propose a novel semantic-aware upsampling method, which has a larger receptive field and can take far-away pixels that are semantically related for feature upsampling, enabling it to better preserve semantic consistency for instances with the same semantic labels. Extensive experiments on two image generation tasks show the superior performance of the proposed method. State-of-the-art results are established by large margins on both tasks and on nine challenging public benchmarks. The source code and trained models are available at https://github.com/Ha0Tang/LGGAN.