pwc-archive/papers-with-abstracts huggingface dataset:
Multi-Task Multi-Scale Learning For Outcome Prediction in 3D PET Images
Authors: Amine Amyar, Romain Modzelewski, Pierre Vera, Vincent Morard, Su Ruan
Date: 2022-03-01 00:00:00
Tasks: Inductive Bias, Multi-Task Learning

Background and Objectives: Predicting patient response to treatment and survival in oncology is a prominent way towards precision medicine. To that end, radiomics was proposed as a field of study where images are used instead of invasive methods. The first step in radiomic analysis is the segmentation of the lesion. However, this task is time consuming and can be physician subjective. Automated tools based on supervised deep learning have made great progress to assist physicians. However, they are data hungry, and annotated data remains a major issue in the medical field where only a small subset of annotated images is available. Methods: In this work, we propose a multi-task learning framework to predict patient's survival and response. We show that the encoder can leverage multiple tasks to extract meaningful and powerful features that improve radiomics performance. We show also that subsidiary tasks serve as an inductive bias so that the model can better generalize. Results: Our model was tested and validated for treatment response and survival in lung and esophageal cancers, with an area under the ROC curve of 77% and 71% respectively, outperforming single task learning methods. Conclusions: We show that, by using a multi-task learning approach, we can boost the performance of radiomic analysis by extracting rich information of intratumoral and peritumoral regions.
Full RGB Just Noticeable Difference (JND) Modelling
Authors: Jian Jin, Dong Yu, Weisi Lin, Lili Meng, Hao Wang, Huaxiang Zhang
Date: 2022-03-01 00:00:00
Tasks: Image Quality Assessment

Just Noticeable Difference (JND) has many applications in multimedia signal processing, especially for visual data processing up to date. It's generally defined as the minimum visual content changes that the human can perspective, which has been studied for decades. However, most of the existing methods only focus on the luminance component of JND modelling and simply regard chrominance components as scaled versions of luminance. In this paper, we propose a JND model to generate the JND by taking the characteristics of full RGB channels into account, termed as the RGB-JND. To this end, an RGB-JND-NET is proposed, where the visual content in full RGB channels is used to extract features for JND generation. To supervise the JND generation, an adaptive image quality assessment combination (AIC) is developed. Besides, the RDB-JND-NET also takes the visual attention into account by automatically mining the underlying relationship between visual attention and the JND, which is further used to constrain the JND spatial distribution. To the best of our knowledge, this is the first work on careful investigation of JND modelling for full-color space. Experimental results demonstrate that the RGB-JND-NET model outperforms the relevant state-of-the-art JND models. Besides, the JND of the red and blue channels are larger than that of the green one according to the experimental results of the proposed model, which demonstrates that more changes can be tolerated in the red and blue channels, in line with the well-known fact that the human visual system is more sensitive to the green channel in comparison with the red and blue ones.
A unified 3D framework for Organs at Risk Localization and Segmentation for Radiation Therapy Planning
Authors: Fernando Navarro, Guido Sasahara, Suprosanna Shit, Ivan Ezhov, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Date: 2022-03-01 00:00:00
Tasks: Medical Image Analysis, Organ Segmentation, Segmentation

Automatic localization and segmentation of organs-at-risk (OAR) in CT are essential pre-processing steps in medical image analysis tasks, such as radiation therapy planning. For instance, the segmentation of OAR surrounding tumors enables the maximization of radiation to the tumor area without compromising the healthy tissues. However, the current medical workflow requires manual delineation of OAR, which is prone to errors and is annotator-dependent. In this work, we aim to introduce a unified 3D pipeline for OAR localization-segmentation rather than novel localization or segmentation architectures. To the best of our knowledge, our proposed framework fully enables the exploitation of 3D context information inherent in medical imaging. In the first step, a 3D multi-variate regression network predicts organs' centroids and bounding boxes. Secondly, 3D organ-specific segmentation networks are leveraged to generate a multi-organ segmentation map. Our method achieved an overall Dice score of $0.9260\pm 0.18 \%$ on the VISCERAL dataset containing CT scans with varying fields of view and multiple organs.
SwitchHit: A Probabilistic, Complementarity-Based Switching System for Improved Visual Place Recognition in Changing Environments
Authors: Maria Waheed, Michael Milford, Klaus McDonald-Maier, Shoaib Ehsan
Date: 2022-03-01 00:00:00
Tasks: Visual Place Recognition

Visual place recognition (VPR), a fundamental task in computer vision and robotics, is the problem of identifying a place mainly based on visual information. Viewpoint and appearance changes, such as due to weather and seasonal variations, make this task challenging. Currently, there is no universal VPR technique that can work in all types of environments, on a variety of robotic platforms, and under a wide range of viewpoint and appearance changes. Recent work has shown the potential of combining different VPR methods intelligently by evaluating complementarity for some specific VPR datasets to achieve better performance. This, however, requires ground truth information (correct matches) which is not available when a robot is deployed in a real-world scenario. Moreover, running multiple VPR techniques in parallel may be prohibitive for resource-constrained embedded platforms. To overcome these limitations, this paper presents a probabilistic complementarity based switching VPR system, SwitchHit. Our proposed system consists of multiple VPR techniques, however, it does not simply run all techniques at once, rather predicts the probability of correct match for an incoming query image and dynamically switches to another complementary technique if the probability of correctly matching the query is below a certain threshold. This innovative use of multiple VPR techniques allow our system to be more efficient and robust than other combined VPR approaches employing brute force and running multiple VPR techniques at once. Thus making it more suitable for resource constrained embedded systems and achieving an overall superior performance from what any individual VPR method in the system could have by achieved running independently.
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology
Authors: Richard J. Chen, Rahul G. Krishnan
Date: 2022-03-01 00:00:00
Tasks: Diversity, Knowledge Distillation, Transfer Learning

Tissue phenotyping is a fundamental task in learning objective characterizations of histopathologic biomarkers within the tumor-immune microenvironment in cancer pathology. However, whole-slide imaging (WSI) is a complex computer vision in which: 1) WSIs have enormous image resolutions with precludes large-scale pixel-level efforts in data curation, and 2) diversity of morphological phenotypes results in inter- and intra-observer variability in tissue labeling. To address these limitations, current efforts have proposed using pretrained image encoders (transfer learning from ImageNet, self-supervised pretraining) in extracting morphological features from pathology, but have not been extensively validated. In this work, we conduct a search for good representations in pathology by training a variety of self-supervised models with validation on a variety of weakly-supervised and patch-level tasks. Our key finding is in discovering that Vision Transformers using DINO-based knowledge distillation are able to learn data-efficient and interpretable features in histology images wherein the different attention heads learn distinct morphological phenotypes. We make evaluation code and pretrained weights publicly-available at: https://github.com/Richarizardd/Self-Supervised-ViT-Path.
Towards a unified view of unsupervised non-local methods for image denoising: the NL-Ridge approach
Authors: Sébastien Herbreteau, Charles Kervrann
Date: 2022-03-01 00:00:00
Tasks: Deep Learning, Denoising, Image Denoising, Learning Theory

We propose a unified view of unsupervised non-local methods for image denoising that linearily combine noisy image patches. The best methods, established in different modeling and estimation frameworks, are two-step algorithms. Leveraging Stein's unbiased risk estimate (SURE) for the first step and the "internal adaptation", a concept borrowed from deep learning theory, for the second one, we show that our NL-Ridge approach enables to reconcile several patch aggregation methods for image denoising. In the second step, our closed-form aggregation weights are computed through multivariate Ridge regressions. Experiments on artificially noisy images demonstrate that NL-Ridge may outperform well established state-of-the-art unsupervised denoisers such as BM3D and NL-Bayes, as well as recent unsupervised deep learning methods, while being simpler conceptually.
Descriptellation: Deep Learned Constellation Descriptors
Authors: Chunwei Xing, Xinyu Sun, Andrei Cramariuc, Samuel Gull, Jen Jen Chung, Cesar Cadena, Roland Siegwart, Florian Tschopp
Date: 2022-03-01 00:00:00
Tasks: Simultaneous Localization and Mapping

Current descriptors for global localization often struggle under vast viewpoint or appearance changes. One possible improvement is the addition of topological information on semantic objects. However, handcrafted topological descriptors are hard to tune and not robust to environmental noise, drastic perspective changes, object occlusion or misdetections. To solve this problem, we formulate a learning-based approach by modelling semantically meaningful object constellations as graphs and using Deep Graph Convolution Networks to map a constellation to a descriptor. We demonstrate the effectiveness of our Deep Learned Constellation Descriptor (Descriptellation) on two real-world datasets. Although Descriptellation is trained on randomly generated simulation datasets, it shows good generalization abilities on real-world datasets. Descriptellation also outperforms state-of-the-art and handcrafted constellation descriptors for global localization, and is robust to different types of noise. The code is publicly available at https://github.com/ethz-asl/Descriptellation.
Towards deep learning-powered IVF: A large public benchmark for morphokinetic parameter prediction
Authors: Tristan Gomez, Magalie Feyeux, Nicolas Normand, Laurent David, Perrine Paul-Gilloteaux, Thomas Fréour, Harold Mouchère
Date: 2022-03-01 00:00:00
Tasks: Deep Learning, Parameter Prediction

An important limitation to the development of Artificial Intelligence (AI)-based solutions for In Vitro Fertilization (IVF) is the absence of a public reference benchmark to train and evaluate deep learning (DL) models. In this work, we describe a fully annotated dataset of 704 videos of developing embryos, for a total of 337k images. We applied ResNet, LSTM, and ResNet-3D architectures to our dataset and demonstrate that they overperform algorithmic approaches to automatically annotate stage development phases. Altogether, we propose the first public benchmark that will allow the community to evaluate morphokinetic models. This is the first step towards deep learning-powered IVF. Of note, we propose highly detailed annotations with 16 different development phases, including early cell division phases, but also late cell divisions, phases after morulation, and very early phases, which have never been used before. We postulate that this original approach will help improve the overall performance of deep learning approaches on time-lapse videos of embryo development, ultimately benefiting infertile patients with improved clinical success rates (Code and data are available at https://gitlab.univ-nantes.fr/E144069X/bench_mk_pred.git).
Towards Creativity Characterization of Generative Models via Group-based Subset Scanning
Authors: Celia Cintas, Payel Das, Brian Quanz, Girmaw Abebe Tadesse, Skyler Speakman, Pin-Yu Chen
Date: 2022-03-01 00:00:00

Deep generative models, such as Variational Autoencoders (VAEs) and Generative Adversarial Networks (GANs), have been employed widely in computational creativity research. However, such models discourage out-of-distribution generation to avoid spurious sample generation, thereby limiting their creativity. Thus, incorporating research on human creativity into generative deep learning techniques presents an opportunity to make their outputs more compelling and human-like. As we see the emergence of generative models directed toward creativity research, a need for machine learning-based surrogate metrics to characterize creative output from these models is imperative. We propose group-based subset scanning to identify, quantify, and characterize creative processes by detecting a subset of anomalous node-activations in the hidden layers of the generative models. Our experiments on the standard image benchmarks, and their "creatively generated" variants, reveal that the proposed subset scores distribution is more useful for detecting creative processes in the activation space rather than the pixel space. Further, we found that creative samples generate larger subsets of anomalies than normal or non-creative samples across datasets. The node activations highlighted during the creative decoding process are different from those responsible for the normal sample generation. Lastly, we assess if the images from the subsets selected by our method were also found creative by human evaluators, presenting a link between creativity perception in humans and node activations within deep neural nets.
JOINED : Prior Guided Multi-task Learning for Joint Optic Disc/Cup Segmentation and Fovea Detection
Authors: Huaqing He, Li Lin, Zhiyuan Cai, Xiaoying Tang
Date: 2022-03-01 00:00:00
Tasks: Fovea Detection, Multi-Task Learning, Segmentation

Fundus photography has been routinely used to document the presence and severity of various retinal degenerative diseases such as age-related macula degeneration, glaucoma, and diabetic retinopathy, for which the fovea, optic disc (OD), and optic cup (OC) are important anatomical landmarks. Identification of those anatomical landmarks is of great clinical importance. However, the presence of lesions, drusen, and other abnormalities during retinal degeneration severely complicates automatic landmark detection and segmentation. Most existing works treat the identification of each landmark as a single task and typically do not make use of any clinical prior information. In this paper, we present a novel method, named JOINED, for prior guided multi-task learning for joint OD/OC segmentation and fovea detection. An auxiliary branch for distance prediction, in addition to a segmentation branch and a detection branch, is constructed to effectively utilize the distance information from each image pixel to landmarks of interest. Our proposed JOINED pipeline consists of a coarse stage and a fine stage. At the coarse stage, we obtain the OD/OC coarse segmentation and the heatmap localization of fovea through a joint segmentation and detection module. Afterwards, we crop the regions of interest for subsequent fine processing and use predictions obtained at the coarse stage as additional information for better performance and faster convergence. Experimental results reveal that our proposed JOINED outperforms existing state-of-the-art approaches on the publicly-available GAMMA, PALM, and REFUGE datasets of fundus images. Furthermore, JOINED ranked the 5th on the OD/OC segmentation and fovea detection tasks in the GAMMA challenge hosted by the MICCAI2021 workshop OMIA8.
Bridge the Gap between Supervised and Unsupervised Learning for Fine-Grained Classification
Authors: Jiabao Wang, Yang Li, Xiu-Shen Wei, Hang Li, Zhuang Miao, Rui Zhang
Date: 2022-03-01 00:00:00
Tasks: Clustering, Contrastive Learning, Domain Adaptation, Fine-Grained Image Classification, Person Re-Identification

Unsupervised learning technology has caught up with or even surpassed supervised learning technology in general object classification (GOC) and person re-identification (re-ID). However, it is found that the unsupervised learning of fine-grained visual classification (FGVC) is more challenging than GOC and person re-ID. In order to bridge the gap between unsupervised and supervised learning for FGVC, we investigate the essential factors (including feature extraction, clustering, and contrastive learning) for the performance gap between supervised and unsupervised FGVC. Furthermore, we propose a simple, effective, and practical method, termed as UFCL, to alleviate the gap. Three key issues are concerned and improved: First, we introduce a robust and powerful backbone, ResNet50-IBN, which has an ability of domain adaptation when we transfer ImageNet pre-trained models to FGVC tasks. Next, we propose to introduce HDBSCAN instead of DBSCAN to do clustering, which can generate better clusters for adjacent categories with fewer hyper-parameters. Finally, we propose a weighted feature agent and its updating mechanism to do contrastive learning by using the pseudo labels with inevitable noise, which can improve the optimization process of learning the parameters of the network. The effectiveness of our UFCL is verified on CUB-200-2011, Oxford-Flowers, Oxford-Pets, Stanford-Dogs, Stanford-Cars and FGVC-Aircraft datasets. Under the unsupervised FGVC setting, we achieve state-of-the-art results, and analyze the key factors and the important parameters to provide a practical guidance.
Boundary Corrected Multi-scale Fusion Network for Real-time Semantic Segmentation
Authors: Tianjiao Jiang, Yi Jin, Tengfei Liang, Xu Wang, Yidong Li
Date: 2022-03-01 00:00:00
Tasks: Real-Time Semantic Segmentation, Scene Parsing, Segmentation, Semantic Segmentation

Image semantic segmentation aims at the pixel-level classification of images, which has requirements for both accuracy and speed in practical application. Existing semantic segmentation methods mainly rely on the high-resolution input to achieve high accuracy and do not meet the requirements of inference time. Although some methods focus on high-speed scene parsing with lightweight architectures, they can not fully mine semantic features under low computation with relatively low performance. To realize the real-time and high-precision segmentation, we propose a new method named Boundary Corrected Multi-scale Fusion Network, which uses the designed Low-resolution Multi-scale Fusion Module to extract semantic information. Moreover, to deal with boundary errors caused by low-resolution feature map fusion, we further design an additional Boundary Corrected Loss to constrain overly smooth features. Extensive experiments show that our method achieves a state-of-the-art balance of accuracy and speed for the real-time semantic segmentation.
Beam-Shape Effects and Noise Removal from THz Time-Domain Images in Reflection Geometry in the 0.25-6 THz Range
Authors: Marina Ljubenovic, Alessia Artesani, Stefano Bonetti, Arianna Traviglia
Date: 2022-03-01 00:00:00
Tasks: Deblurring, Denoising, Image Deblurring

The increasing need of restoring high-resolution Hyper-Spectral (HS) images is determining a growing reliance on Computer Vision-based processing to enhance the clarity of the image content. HS images can, in fact, suffer from degradation effects or artefacts caused by instrument limitations. This paper focuses on a procedure aimed at reducing the degradation effects, frequency-dependent blur and noise, in Terahertz Time-Domain Spectroscopy (THz-TDS) images in reflection geometry. It describes the application of a joint deblurring and denoising approach that had been previously proved to be effective for the restoration of THz-TDS images in transmission geometry, but that had never been tested in reflection modality. This mode is often the only one that can be effectively used in most cases, for example when analyzing objects that are either opaque in the THz range, or that cannot be displaced from their location (e.g., museums), such as those of cultural interest. Compared to transmission mode, reflection geometry introduces, however, further distortion to THz data, neglected in existing literature. In this work, we successfully implement image deblurring and denoising of both uniform-shape samples (a contemporary 1 Euro cent coin and an inlaid pendant) and samples with the uneven reliefs and corrosion products on the surface which make the analysis of the object particularly complex (an ancient Roman silver coin). The study demonstrates the ability of image processing to restore data in the 0.25 - 6 THz range, spanning over more than four octaves, and providing the foundation for future analytical approaches of cultural heritage using the far-infrared spectrum still not sufficiently investigated in literature.
Motion-aware Dynamic Graph Neural Network for Video Compressive Sensing
Authors: Ruiying Lu, Ziheng Cheng, Bo Chen, Xin Yuan
Date: 2022-03-01 00:00:00
Tasks: Compressive Sensing, Graph Neural Network, Video Compressive Sensing

Video snapshot compressive imaging (SCI) utilizes a 2D detector to capture sequential video frames and compress them into a single measurement. Various reconstruction methods have been developed to recover the high-speed video frames from the snapshot measurement. However, most existing reconstruction methods are incapable of efficiently capturing long-range spatial and temporal dependencies, which are critical for video processing. In this paper, we propose a flexible and robust approach based on the graph neural network (GNN) to efficiently model non-local interactions between pixels in space and time regardless of the distance. Specifically, we develop a motion-aware dynamic GNN for better video representation, i.e., represent each node as the aggregation of relative neighbors under the guidance of frame-by-frame motions, which consists of motion-aware dynamic sampling, cross-scale node sampling, global knowledge integration, and graph aggregation. Extensive results on both simulation and real data demonstrate both the effectiveness and efficiency of the proposed approach, and the visualization illustrates the intrinsic dynamic sampling operations of our proposed model for boosting the video SCI reconstruction results. The code and model will be released.