pwc-archive/papers-with-abstracts huggingface dataset:
Probabilistic Structure Learning for EEG/MEG Source Imaging with Hierarchical Graph Prior
Authors: Feng Liu, Li Wang, Yifei Lou, Ren-cang Li, Patrick Purdon
Date: 2019-06-05 00:00:00
Tasks: EEG, Electroencephalogram (EEG)

Brain source imaging is an important method for noninvasively characterizing brain activity using Electroencephalogram (EEG) or Magnetoencephalography (MEG) recordings. Traditional EEG/MEG Source Imaging (ESI) methods usually assume that either source activity at different time points is unrelated, or that similar spatiotemporal patterns exist across an entire study period. The former assumption makes ESI analyses sensitive to noise, while the latter renders ESI analyses unable to account for time-varying patterns of activity. To effectively deal with noise while maintaining flexibility and continuity among brain activation patterns, we propose a novel probabilistic ESI model based on a hierarchical graph prior. Under our method, a spanning tree constraint ensures that activity patterns have spatiotemporal continuity. An efficient algorithm based on alternating convex search is presented to solve the proposed model and is provably convergent. Comprehensive numerical studies using synthetic data on a real brain model are conducted under different levels of signal-to-noise ratio (SNR) from both sensor and source spaces. We also examine the EEG/MEG data in a real application, in which our ESI reconstructions are neurologically plausible. All the results demonstrate significant improvements of the proposed algorithm over the benchmark methods in terms of source localization performance, especially at high noise levels.
General Purpose Incremental Covariance Update and Efficient Belief Space Planning via Factor-Graph Propagation Action Tree
Authors: Dmitry Kopitkov, Vadim Indelman
Date: 2019-06-05 00:00:00

Fast covariance calculation is required both for SLAM (e.g.~in order to solve data association) and for evaluating the information-theoretic term for different candidate actions in belief space planning (BSP). In this paper we make two primary contributions. First, we develop a novel general-purpose incremental covariance update technique, which efficiently recovers specific covariance entries after any change in the inference problem, such as introduction of new observations/variables or re-linearization of the state vector. Our approach is shown to recover them faster than other state-of-the-art methods. Second, we present a computationally efficient approach for BSP in high-dimensional state spaces, leveraging our incremental covariance update method. State of the art BSP approaches perform belief propagation for each candidate action and then evaluate an objective function that typically includes an information-theoretic term, such as entropy or information gain. Yet, candidate actions often have similar parts (e.g. common trajectory parts), which are however evaluated separately for each candidate. Moreover, calculating the information-theoretic term involves a costly determinant computation of the entire information (covariance) matrix which is O(n^3) with n being dimension of the state or costly Schur complement operations if only marginal posterior covariance of certain variables is of interest. Our approach, rAMDL-Tree, extends our previous BSP method rAMDL, by exploiting incremental covariance calculation and performing calculation re-use between common parts of non-myopic candidate actions, such that these parts are evaluated only once, in contrast to existing approaches.
Complex Evolution Recurrent Neural Networks (ceRNNs)
Authors: Izhak Shafran, Tom Bagby, R. J. Skerry-Ryan
Date: 2019-06-05 00:00:00
Tasks: speech-recognition, Speech Recognition

Unitary Evolution Recurrent Neural Networks (uRNNs) have three attractive properties: (a) the unitary property, (b) the complex-valued nature, and (c) their efficient linear operators. The literature so far does not address -- how critical is the unitary property of the model? Furthermore, uRNNs have not been evaluated on large tasks. To study these shortcomings, we propose the complex evolution Recurrent Neural Networks (ceRNNs), which is similar to uRNNs but drops the unitary property selectively. On a simple multivariate linear regression task, we illustrate that dropping the constraints improves the learning trajectory. In copy memory task, ceRNNs and uRNNs perform identically, demonstrating that their superior performance over LSTMs is due to complex-valued nature and their linear operators. In a large scale real-world speech recognition, we find that pre-pending a uRNN degrades the performance of our baseline LSTM acoustic models, while pre-pending a ceRNN improves the performance over the baseline by 0.8% absolute WER.
Energy and Policy Considerations for Deep Learning in NLP
Authors: Emma Strubell, Ananya Ganesh, Andrew McCallum
Date: 2019-06-05 00:00:00
Proceeding: ACL 2019 7
Tasks: Deep Learning

Recent progress in hardware and methodology for training neural networks has ushered in a new generation of large networks trained on abundant data. These models have obtained notable gains in accuracy across many NLP tasks. However, these accuracy improvements depend on the availability of exceptionally large computational resources that necessitate similarly substantial energy consumption. As a result these models are costly to train and develop, both financially, due to the cost of hardware and electricity or cloud compute time, and environmentally, due to the carbon footprint required to fuel modern tensor processing hardware. In this paper we bring this issue to the attention of NLP researchers by quantifying the approximate financial and environmental costs of training a variety of recently successful neural network models for NLP. Based on these findings, we propose actionable recommendations to reduce costs and improve equity in NLP research and practice.
Variational Pretraining for Semi-supervised Text Classification
Authors: Suchin Gururangan, Tam Dang, Dallas Card, Noah A. Smith
Date: 2019-06-05 00:00:00
Proceeding: ACL 2019 7
Tasks: Classification, General Classification, Semi-Supervised Text Classification, Text Classification

We introduce VAMPIRE, a lightweight pretraining framework for effective text classification when data and computing resources are limited. We pretrain a unigram document model as a variational autoencoder on in-domain, unlabeled data and use its internal states as features in a downstream classifier. Empirically, we show the relative strength of VAMPIRE against computationally expensive contextual embeddings and other popular semi-supervised baselines under low resource settings. We also find that fine-tuning to in-domain data is crucial to achieving decent performance from contextual embeddings when working with limited supervision. We accompany this paper with code to pretrain and use VAMPIRE embeddings in downstream tasks.
A Deep Learning Framework for Classification of in vitro Multi-Electrode Array Recordings
Authors: Yun Zhao, Elmer Guzman, Morgane Audouard, Zhuowei Cheng, PaulK. Hansma, Kenneth S. Kosik, Linda Petzold
Date: 2019-06-05 00:00:00
Tasks: Cultural Vocal Bursts Intensity Prediction, General Classification

Multi-Electrode Arrays (MEAs) have been widely used to record neuronal activities, which could be used in the diagnosis of gene defects and drug effects. In this paper, we address the problem of classifying in vitro MEA recordings of mouse and human neuronal cultures from different genotypes, where there is no easy way to directly utilize raw sequences as inputs to train an end-to-end classification model. While carefully extracting some features by hand could partially solve the problem, this approach suffers from obvious drawbacks such as difficulty of generalizing. We propose a deep learning framework to address this challenge. Our approach correctly classifies neuronal culture data prepared from two different genotypes -- a mouse Knockout of the delta-catenin gene and human induced Pluripotent Stem Cell-derived neurons from Williams syndrome. By splitting the long recordings into short slices for training, and applying Consensus Prediction during testing, our deep learning approach improves the prediction accuracy by 16.69% compared with feature based Logistic Regression for mouse MEA recordings. We further achieve an accuracy of 95.91% using Consensus Prediction in one subset of mouse MEA recording data, which were all recorded at six days in vitro. As high-density MEA recordings become more widely available, this approach could be generalized for classification of neurons carrying different mutations and classification of drug responses.
Extracting Symptoms and their Status from Clinical Conversations
Authors: Nan Du, Kai Chen, Anjuli Kannan, Linh Tran, Yu-Hui Chen, Izhak Shafran
Date: 2019-06-05 00:00:00
Proceeding: ACL 2019 7
Tasks: Attribute

This paper describes novel models tailored for a new application, that of extracting the symptoms mentioned in clinical conversations along with their status. Lack of any publicly available corpus in this privacy-sensitive domain led us to develop our own corpus, consisting of about 3K conversations annotated by professional medical scribes. We propose two novel deep learning approaches to infer the symptom names and their status: (1) a new hierarchical span-attribute tagging (\SAT) model, trained using curriculum learning, and (2) a variant of sequence-to-sequence model which decodes the symptoms and their status from a few speaker turns within a sliding window over the conversation. This task stems from a realistic application of assisting medical providers in capturing symptoms mentioned by patients from their clinical conversations. To reflect this application, we define multiple metrics. From inter-rater agreement, we find that the task is inherently difficult. We conduct comprehensive evaluations on several contrasting conditions and observe that the performance of the models range from an F-score of 0.5 to 0.8 depending on the condition. Our analysis not only reveals the inherent challenges of the task, but also provides useful directions to improve the models.
Adaptation Across Extreme Variations using Unlabeled Domain Bridges
Authors: Shuyang Dai, Kihyuk Sohn, Yi-Hsuan Tsai, Lawrence Carin, Manmohan Chandraker
Date: 2019-06-05 00:00:00
Tasks: Domain Adaptation, Object Recognition, Semantic Segmentation, Unsupervised Domain Adaptation

We tackle an unsupervised domain adaptation problem for which the domain discrepancy between labeled source and unlabeled target domains is large, due to many factors of inter and intra-domain variation. While deep domain adaptation methods have been realized by reducing the domain discrepancy, these are difficult to apply when domains are significantly unalike. In this work, we propose to decompose domain discrepancy into multiple but smaller, and thus easier to minimize, discrepancies by introducing unlabeled bridging domains that connect the source and target domains. We realize our proposal through an extension of the domain adversarial neural network with multiple discriminators, each of which accounts for reducing discrepancies between unlabeled (bridge, target) domains and a mix of all precedent domains including source. We validate the effectiveness of our method on several adaptation tasks including object recognition and semantic segmentation.
Noise Contrastive Meta-Learning for Conditional Density Estimation using Kernel Mean Embeddings
Authors: Jean-Francois Ton, Lucian Chan, Yee Whye Teh, Dino Sejdinovic
Date: 2019-06-05 00:00:00
Tasks: Density Estimation, Meta-Learning, regression

Current meta-learning approaches focus on learning functional representations of relationships between variables, i.e. on estimating conditional expectations in regression. In many applications, however, we are faced with conditional distributions which cannot be meaningfully summarized using expectation only (due to e.g. multimodality). Hence, we consider the problem of conditional density estimation in the meta-learning setting. We introduce a novel technique for meta-learning which combines neural representation and noise-contrastive estimation with the established literature of conditional mean embeddings into reproducing kernel Hilbert spaces. The method is validated on synthetic and real-world problems, demonstrating the utility of sharing learned representations across multiple conditional density estimation tasks.
Gradient-Based Neural DAG Learning
Authors: Sébastien Lachapelle, Philippe Brouillard, Tristan Deleu, Simon Lacoste-Julien
Date: 2019-06-05 00:00:00
Proceeding: ICLR 2020 1
Tasks: Causal Inference

We propose a novel score-based approach to learning a directed acyclic graph (DAG) from observational data. We adapt a recently proposed continuous constrained optimization formulation to allow for nonlinear relationships between variables using neural networks. This extension allows to model complex interactions while avoiding the combinatorial nature of the problem. In addition to comparing our method to existing continuous optimization methods, we provide missing empirical comparisons to nonlinear greedy search methods. On both synthetic and real-world data sets, this new method outperforms current continuous methods on most tasks, while being competitive with existing greedy search methods on important metrics for causal inference.
Nail Polish Try-On: Realtime Semantic Segmentation of Small Objects for Native and Browser Smartphone AR Applications
Authors: Brendan Duke, Abdalla Ahmed, Edmund Phung, Irina Kezele, Parham Aarabi
Date: 2019-06-05 00:00:00
Tasks: Segmentation, Semantic Segmentation

We provide a system for semantic segmentation of small objects that enables nail polish try-on AR applications to run client-side in realtime in native and web mobile applications. By adjusting input resolution and neural network depth, our model design enables a smooth trade-off of performance and runtime, with the highest performance setting achieving~\num{94.5} mIoU at 29.8ms runtime in native applications on an iPad Pro. We also provide a postprocessing and rendering algorithm for nail polish try-on, which integrates with our semantic segmentation and fingernail base-tip direction predictions.
Large-Scale Multi-Label Text Classification on EU Legislation
Authors: Ilias Chalkidis, Manos Fergadiotis, Prodromos Malakasiotis, Ion Androutsopoulos
Date: 2019-06-05 00:00:00
Proceeding: ACL 2019 7
Tasks: Classification, General Classification, Multi Label Text Classification, Multi-Label Text Classification, text-classification, Text Classification, Zero-Shot Learning

We consider Large-Scale Multi-Label Text Classification (LMTC) in the legal domain. We release a new dataset of 57k legislative documents from EURLEX, annotated with ~4.3k EUROVOC labels, which is suitable for LMTC, few- and zero-shot learning. Experimenting with several neural classifiers, we show that BIGRUs with label-wise attention perform better than other current state of the art methods. Domain-specific WORD2VEC and context-sensitive ELMO embeddings further improve performance. We also find that considering only particular zones of the documents is sufficient. This allows us to bypass BERT's maximum text length limit and fine-tune BERT, obtaining the best results in all but zero-shot learning cases.
Uncertainty-based graph convolutional networks for organ segmentation refinement
Authors: Roger D. Soberanis-Mukul, Nassir Navab, Shadi Albarqouni
Date: 2019-06-05 00:00:00
Proceeding: MIDL 2019 7
Tasks: Graph Learning, Organ Segmentation, Segmentation

Organ segmentation in CT volumes is an important pre-processing step in many computer assisted intervention and diagnosis methods. In recent years, convolutional neural networks have dominated the state of the art in this task. However, since this problem presents a challenging environment due to high variability in the organ's shape and similarity between tissues, the generation of false negative and false positive regions in the output segmentation is a common issue. Recent works have shown that the uncertainty analysis of the model can provide us with useful information about potential errors in the segmentation. In this context, we proposed a segmentation refinement method based on uncertainty analysis and graph convolutional networks. We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem that is solved by training a graph convolutional network. To test our method we refine the initial output of a 2D U-Net. We validate our framework with the NIH pancreas dataset and the spleen dataset of the medical segmentation decathlon. We show that our method outperforms the state-of-the art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen, with respect to the original U-Net's prediction. Finally, we discuss the results and current limitations of the model for future work in this research direction. For reproducibility purposes, we make our code publicly available.
Impact of Prior Knowledge and Data Correlation on Privacy Leakage: A Unified Analysis
Authors: Yanan Li, Xuebin Ren, Shusen Yang, Xinyu Yang
Date: 2019-06-05 00:00:00
Tasks: valid

It has been widely understood that differential privacy (DP) can guarantee rigorous privacy against adversaries with arbitrary prior knowledge. However, recent studies demonstrate that this may not be true for correlated data, and indicate that three factors could influence privacy leakage: the data correlation pattern, prior knowledge of adversaries, and sensitivity of the query function. This poses a fundamental problem: what is the mathematical relationship between the three factors and privacy leakage? In this paper, we present a unified analysis of this problem. A new privacy definition, named \textit{prior differential privacy (PDP)}, is proposed to evaluate privacy leakage considering the exact prior knowledge possessed by the adversary. We use two models, the weighted hierarchical graph (WHG) and the multivariate Gaussian model to analyze discrete and continuous data, respectively. We demonstrate that positive, negative, and hybrid correlations have distinct impacts on privacy leakage. Considering general correlations, a closed-form expression of privacy leakage is derived for continuous data, and a chain rule is presented for discrete data. Our results are valid for general linear queries, including count, sum, mean, and histogram. Numerical experiments are presented to verify our theoretical analysis.
Training Temporal Word Embeddings with a Compass
Authors: Valerio Di Carlo, Federico Bianchi, Matteo Palmonari
Date: 2019-06-05 00:00:00
Tasks: Diachronic Word Embeddings, Word Embeddings

Temporal word embeddings have been proposed to support the analysis of word meaning shifts during time and to study the evolution of languages. Different approaches have been proposed to generate vector representations of words that embed their meaning during a specific time interval. However, the training process used in these approaches is complex, may be inefficient or it may require large text corpora. As a consequence, these approaches may be difficult to apply in resource-scarce domains or by scientists with limited in-depth knowledge of embedding models. In this paper, we propose a new heuristic to train temporal word embeddings based on the Word2vec model. The heuristic consists in using atemporal vectors as a reference, i.e., as a compass, when training the representations specific to a given time interval. The use of the compass simplifies the training process and makes it more efficient. Experiments conducted using state-of-the-art datasets and methodologies suggest that our approach outperforms or equals comparable approaches while being more robust in terms of the required corpus size.
Topic Sensitive Attention on Generic Corpora Corrects Sense Bias in Pretrained Embeddings
Authors: Vihari Piratla, Sunita Sarawagi, Soumen Chakrabarti
Date: 2019-06-05 00:00:00
Proceeding: ACL 2019 7

Given a small corpus $\mathcal D_T$ pertaining to a limited set of focused topics, our goal is to train embeddings that accurately capture the sense of words in the topic in spite of the limited size of $\mathcal D_T$. These embeddings may be used in various tasks involving $\mathcal D_T$. A popular strategy in limited data settings is to adapt pre-trained embeddings $\mathcal E$ trained on a large corpus. To correct for sense drift, fine-tuning, regularization, projection, and pivoting have been proposed recently. Among these, regularization informed by a word's corpus frequency performed well, but we improve upon it using a new regularizer based on the stability of its cooccurrence with other words. However, a thorough comparison across ten topics, spanning three tasks, with standardized settings of hyper-parameters, reveals that even the best embedding adaptation strategies provide small gains beyond well-tuned baselines, which many earlier comparisons ignored. In a bold departure from adapting pretrained embeddings, we propose using $\mathcal D_T$ to probe, attend to, and borrow fragments from any large, topic-rich source corpus (such as Wikipedia), which need not be the corpus used to pretrain embeddings. This step is made scalable and practical by suitable indexing. We reach the surprising conclusion that even limited corpus augmentation is more useful than adapting embeddings, which suggests that non-dominant sense information may be irrevocably obliterated from pretrained embeddings and cannot be salvaged by adaptation.
Automated Classification of Seizures against Nonseizures: A Deep Learning Approach
Authors: Xinghua Yao, Qiang Cheng, Guo-Qiang Zhang
Date: 2019-06-05 00:00:00
Tasks: Classification, Deep Learning, EEG, Electroencephalogram (EEG), General Classification, Specificity

In current clinical practice, electroencephalograms (EEG) are reviewed and analyzed by well-trained neurologists to provide supports for therapeutic decisions. The way of manual reviewing is labor-intensive and error prone. Automatic and accurate seizure/nonseizure classification methods are needed. One major problem is that the EEG signals for seizure state and nonseizure state exhibit considerable variations. In order to capture essential seizure features, this paper integrates an emerging deep learning model, the independently recurrent neural network (IndRNN), with a dense structure and an attention mechanism to exploit temporal and spatial discriminating features and overcome seizure variabilities. The dense structure is to ensure maximum information flow between layers. The attention mechanism is to capture spatial features. Evaluations are performed in cross-validation experiments over the noisy CHB-MIT data set. The obtained average sensitivity, specificity and precision of 88.80%, 88.60% and 88.69% are better than using the current state-of-the-art methods. In addition, we explore how the segment length affects the classification performance. Thirteen different segment lengths are assessed, showing that the classification performance varies over the segment lengths, and the maximal fluctuating margin is more than 4%. Thus, the segment length is an important factor influencing the classification performance.