pt-sk/ml_research_abs huggingface dataset:
A multimodal AI-based non-invasive COVID-19 grading framework powered by deep learning, manta ray, and fuzzy inference system from multimedia vital signs.
Authors: Saleh AteeqAlmutairi
Journal: Heliyon

The COVID-19 pandemic has presented unprecedented challenges to healthcare systems worldwide. One of the key challenges in controlling and managing the pandemic is accurate and rapid diagnosis of COVID-19 cases. Traditional diagnostic methods such as RT-PCR tests are time-consuming and require specialized equipment and trained personnel. Computer-aided diagnosis systems and artificial intelligence (AI) have emerged as promising tools for developing cost-effective and accurate diagnostic approaches. Most studies in this area have focused on diagnosing COVID-19 based on a single modality, such as chest X-rays or cough sounds. However, relying on a single modality may not accurately detect the virus, especially in its early stages. In this research, we propose a non-invasive diagnostic framework consisting of four cascaded layers that work together to accurately detect COVID-19 in patients. The first layer of the framework performs basic diagnostics such as patient temperature, blood oxygen level, and breathing profile, providing initial insights into the patient's condition. The second layer analyzes the coughing profile, while the third layer evaluates chest imaging data such as X-ray and CT scans. Finally, the fourth layer utilizes a fuzzy logic inference system based on the previous three layers to generate a reliable and accurate diagnosis. To evaluate the effectiveness of the proposed framework, we used two datasets: the Cough Dataset and the COVID-19 Radiography Database. The experimental results demonstrate that the proposed framework is effective and trustworthy in terms of accuracy, precision, sensitivity, specificity, F1-score, and balanced accuracy. The audio-based classification achieved an accuracy of 96.55%, while the CXR-based classification achieved an accuracy of 98.55%. The proposed framework has the potential to significantly improve the accuracy and speed of COVID-19 diagnosis, allowing for more effective control and management of the pandemic. Furthermore, the framework's non-invasive nature makes it a more attractive option for patients, reducing the risk of infection and discomfort associated with traditional diagnostic methods.
Fusion-Extracted Features by Deep Networks for Improved COVID-19 Classification with Chest X-ray Radiography.
Authors: Kuo-HsuanLin, Nan-HanLu, TakahideOkamoto, Yung-HuiHuang, Kuo-YingLiu, AkariMatsushima, Che-ChengChang, Tai-BeenChen
Journal: Healthcare (Basel, Switzerland)

Convolutional neural networks (CNNs) have shown promise in accurately diagnosing coronavirus disease 2019 (COVID-19) and bacterial pneumonia using chest X-ray images. However, determining the optimal feature extraction approach is challenging. This study investigates the use of fusion-extracted features by deep networks to improve the accuracy of COVID-19 and bacterial pneumonia classification with chest X-ray radiography. A Fusion CNN method was developed using five different deep learning models after transferred learning to extract image features (Fusion CNN). The combined features were used to build a support vector machine (SVM) classifier with a RBF kernel. The performance of the model was evaluated using accuracy, Kappa values, recall rate, and precision scores. The Fusion CNN model achieved an accuracy and Kappa value of 0.994 and 0.991, with precision scores for normal, COVID-19, and bacterial groups of 0.991, 0.998, and 0.994, respectively. The results indicate that the Fusion CNN models with the SVM classifier provided reliable and accurate classification performance, with Kappa values no less than 0.990. Using a Fusion CNN approach could be a possible solution to enhance accuracy further. Therefore, the study demonstrates the potential of deep learning and fusion-extracted features for accurate COVID-19 and bacterial pneumonia classification with chest X-ray radiography.
A Novel Deep Learning-Based Classification Framework for COVID-19 Assisted with Weighted Average Ensemble Modeling.
Authors: Gouri ShankarChakraborty, SalilBatra, AmanSingh, GhulamMuhammad, Vanessa YelamosTorres, MakulMahajan
Journal: Diagnostics (Basel, Switzerland)

COVID-19 is an infectious disease caused by the deadly virus SARS-CoV-2 that affects the lung of the patient. Different symptoms, including fever, muscle pain and respiratory syndrome, can be identified in COVID-19-affected patients. The disease needs to be diagnosed in a timely manner, otherwise the lung infection can turn into a severe form and the patient's life may be in danger. In this work, an ensemble deep learning-based technique is proposed for COVID-19 detection that can classify the disease with high accuracy, efficiency, and reliability. A weighted average ensemble (WAE) prediction was performed by combining three CNN models, namely Xception, VGG19 and ResNet50V2, where 97.25% and 94.10% accuracy was achieved for binary and multiclass classification, respectively. To accurately detect the disease, different test methods have been proposed and developed, some of which are even being used in real-time situations. RT-PCR is one of the most successful COVID-19 detection methods, and is being used worldwide with high accuracy and sensitivity. However, complexity and time-consuming manual processes are limitations of this method. To make the detection process automated, researchers across the world have started to use deep learning to detect COVID-19 applied on medical imaging. Although most of the existing systems offer high accuracy, different limitations, including high variance, overfitting and generalization errors, can be found that can degrade the system performance. Some of the reasons behind those limitations are a lack of reliable data resources, missing preprocessing techniques, a lack of proper model selection, etc., which eventually create reliability issues. Reliability is an important factor for any healthcare system. Here, transfer learning with better preprocessing techniques applied on two benchmark datasets makes the work more reliable. The weighted average ensemble technique with hyperparameter tuning ensures better accuracy than using a randomly selected single CNN model.
CRV-NET: Robust Intensity Recognition of Coronavirus in Lung Computerized Tomography Scan Images.
Authors: UzairIqbal, RomilImtiaz, Abdul Khader JilaniSaudagar, Khubaib AmjadAlam
Journal: Diagnostics (Basel, Switzerland)

The early diagnosis of infectious diseases is demanded by digital healthcare systems. Currently, the detection of the new coronavirus disease (COVID-19) is a major clinical requirement. For COVID-19 detection, deep learning models are used in various studies, but the robustness is still compromised. In recent years, deep learning models have increased in popularity in almost every area, particularly in medical image processing and analysis. The visualization of the human body's internal structure is critical in medical analysis; many imaging techniques are in use to perform this job. A computerized tomography (CT) scan is one of them, and it has been generally used for the non-invasive observation of the human body. The development of an automatic segmentation method for lung CT scans showing COVID-19 can save experts time and can reduce human error. In this article, the CRV-NET is proposed for the robust detection of COVID-19 in lung CT scan images. A public dataset (SARS-CoV-2 CT Scan dataset), is used for the experimental work and customized according to the scenario of the proposed model. The proposed modified deep-learning-based U-Net model is trained on a custom dataset with 221 training images and their ground truth, which was labeled by an expert. The proposed model is tested on 100 test images, and the results show that the model segments COVID-19 with a satisfactory level of accuracy. Moreover, the comparison of the proposed CRV-NET with different state-of-the-art convolutional neural network models (CNNs), including the U-Net Model, shows better results in terms of accuracy (96.67%) and robustness (low epoch value in detection and the smallest training data size).
A Survey of COVID-19 Diagnosis Using Routine Blood Tests with the Aid of Artificial Intelligence Techniques.
Authors: SoheilaAbbasi Habashi, MuratKoyuncu, RoohallahAlizadehsani
Journal: Diagnostics (Basel, Switzerland)

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), causing a disease called COVID-19, is a class of acute respiratory syndrome that has considerably affected the global economy and healthcare system. This virus is diagnosed using a traditional technique known as the Reverse Transcription Polymerase Chain Reaction (RT-PCR) test. However, RT-PCR customarily outputs a lot of false-negative and incorrect results. Current works indicate that COVID-19 can also be diagnosed using imaging resolutions, including CT scans, X-rays, and blood tests. Nevertheless, X-rays and CT scans cannot always be used for patient screening because of high costs, radiation doses, and an insufficient number of devices. Therefore, there is a requirement for a less expensive and faster diagnostic model to recognize the positive and negative cases of COVID-19. Blood tests are easily performed and cost less than RT-PCR and imaging tests. Since biochemical parameters in routine blood tests vary during the COVID-19 infection, they may supply physicians with exact information about the diagnosis of COVID-19. This study reviewed some newly emerging artificial intelligence (AI)-based methods to diagnose COVID-19 using routine blood tests. We gathered information about research resources and inspected 92 articles that were carefully chosen from a variety of publishers, such as IEEE, Springer, Elsevier, and MDPI. Then, these 92 studies are classified into two tables which contain articles that use machine Learning and deep Learning models to diagnose COVID-19 while using routine blood test datasets. In these studies, for diagnosing COVID-19, Random Forest and logistic regression are the most widely used machine learning methods and the most widely used performance metrics are accuracy, sensitivity, specificity, and AUC. Finally, we conclude by discussing and analyzing these studies which use machine learning and deep learning models and routine blood test datasets for COVID-19 detection. This survey can be the starting point for a novice-/beginner-level researcher to perform on COVID-19 classification.
COVID-ConvNet: A Convolutional Neural Network Classifier for Diagnosing COVID-19 Infection.
Authors: Ibtihal A LAlablani, Mohammed J FAlenazi
Journal: Diagnostics (Basel, Switzerland)

The novel coronavirus (COVID-19) pandemic still has a significant impact on the worldwide population's health and well-being. Effective patient screening, including radiological examination employing chest radiography as one of the main screening modalities, is an important step in the battle against the disease. Indeed, the earliest studies on COVID-19 found that patients infected with COVID-19 present with characteristic anomalies in chest radiography. In this paper, we introduce COVID-ConvNet, a deep convolutional neural network (DCNN) design suitable for detecting COVID-19 symptoms from chest X-ray (CXR) scans. The proposed deep learning (DL) model was trained and evaluated using 21,165 CXR images from the COVID-19 Database, a publicly available dataset. The experimental results demonstrate that our COVID-ConvNet model has a high prediction accuracy at 97.43% and outperforms recent related works by up to 5.9% in terms of prediction accuracy.
Learning without forgetting by leveraging transfer learning for detecting COVID-19 infection from CT images.
Authors: MalligaSubramanian, Veerappampalayam EaswaramoorthySathishkumar, JaehyukCho, KogilavaniShanmugavadivel
Journal: Scientific reports

COVID-19, a global pandemic, has killed thousands in the last three years. Pathogenic laboratory testing is the gold standard but has a high false-negative rate, making alternate diagnostic procedures necessary to fight against it. Computer Tomography (CT) scans help diagnose and monitor COVID-19, especially in severe cases. But, visual inspection of CT images takes time and effort. In this study, we employ Convolution Neural Network (CNN) to detect coronavirus infection from CT images. The proposed study utilized transfer learning on the three pre-trained deep CNN models, namely VGG-16, ResNet, and wide ResNet, to diagnose and detect COVID-19 infection from the CT images. However, when the pre-trained models are retrained, the model suffers the generalization capability to categorize the data in the original datasets. The novel aspect of this work is the integration of deep CNN architectures with Learning without Forgetting (LwF) to enhance the model's generalization capabilities on both trained and new data samples. The LwF makes the network use its learning capabilities in training on the new dataset while preserving the original competencies. The deep CNN models with the LwF model are evaluated on original images and CT scans of individuals infected with Delta-variant of the SARS-CoV-2 virus. The experimental results show that of the three fine-tuned CNN models with the LwF method, the wide ResNet model's performance is superior and effective in classifying original and delta-variant datasets with an accuracy of 93.08% and 92.32%, respectively.
A Systematic Literature Review and Future Perspectives for Handling Big Data Analytics in COVID-19 Diagnosis.
Authors: NagamaniTenali, Gatram Rama MohanBabu
Journal: New generation computing

In today's digital world, information is growing along with the expansion of Internet usage worldwide. As a consequence, bulk of data is generated constantly which is known to be "Big Data". One of the most evolving technologies in twenty-first century is Big Data analytics, it is promising field for extracting knowledge from very large datasets and enhancing benefits while lowering costs. Due to the enormous success of big data analytics, the healthcare sector is increasingly shifting toward adopting these approaches to diagnose diseases. Due to the recent boom in medical big data and the development of computational methods, researchers and practitioners have gained the ability to mine and visualize medical big data on a larger scale. Thus, with the aid of integration of big data analytics in healthcare sectors, precise medical data analysis is now feasible with early sickness detection, health status monitoring, patient treatment, and community services is now achievable. With all these improvements, a deadly disease COVID is considered in this comprehensive review with the intention of offering remedies utilizing big data analytics. The use of big data applications is vital to managing pandemic conditions, such as predicting outbreaks of COVID-19 and identifying cases and patterns of spread of COVID-19. Research is still being done on leveraging big data analytics to forecast COVID-19. But precise and early identification of COVID disease is still lacking due to the volume of medical records like dissimilar medical imaging modalities. Meanwhile, Digital imaging has now become essential to COVID diagnosis, but the main challenge is the storage of massive volumes of data. Taking these limitations into account, a comprehensive analysis is presented in the systematic literature review (SLR) to provide a deeper understanding of big data in the field of COVID-19.
Deep Convolutional Neural Networks for Detecting COVID-19 Using Medical Images: A Survey.
Authors: RanaKhattab, Islam RAbdelmaksoud, SamirAbdelrazek
Journal: New generation computing

Coronavirus Disease 2019 (COVID-19), which is caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-COV-2), surprised the world in December 2019 and has threatened the lives of millions of people. Countries all over the world closed worship places and shops, prevented gatherings, and implemented curfews to stand against the spread of COVID-19. Deep Learning (DL) and Artificial Intelligence (AI) can have a great role in detecting and fighting this disease. Deep learning can be used to detect COVID-19 symptoms and signs from different imaging modalities, such as X-Ray, Computed Tomography (CT), and Ultrasound Images (US). This could help in identifying COVID-19 cases as a first step to curing them. In this paper, we reviewed the research studies conducted from January 2020 to September 2022 about deep learning models that were used in COVID-19 detection. This paper clarified the three most common imaging modalities (X-Ray, CT, and US) in addition to the DL approaches that are used in this detection and compared these approaches. This paper also provided the future directions of this field to fight COVID-19 disease.
COVID-19 Diagnosis in Computerized Tomography (CT) and X-ray Scans Using Capsule Neural Network.
Authors: Andronicus AAkinyelu, BubacarrBah
Journal: Diagnostics (Basel, Switzerland)

This study proposes a deep-learning-based solution (named CapsNetCovid) for COVID-19 diagnosis using a capsule neural network (CapsNet). CapsNets are robust for image rotations and affine transformations, which is advantageous when processing medical imaging datasets. This study presents a performance analysis of CapsNets on standard images and their augmented variants for binary and multi-class classification. CapsNetCovid was trained and evaluated on two COVID-19 datasets of CT images and X-ray images. It was also evaluated on eight augmented datasets. The results show that the proposed model achieved classification accuracy, precision, sensitivity, and F1-score of 99.929%, 99.887%, 100%, and 99.319%, respectively, for the CT images. It also achieved a classification accuracy, precision, sensitivity, and F1-score of 94.721%, 93.864%, 92.947%, and 93.386%, respectively, for the X-ray images. This study presents a comparative analysis between CapsNetCovid, CNN, DenseNet121, and ResNet50 in terms of their ability to correctly identify randomly transformed and rotated CT and X-ray images without the use of data augmentation techniques. The analysis shows that CapsNetCovid outperforms CNN, DenseNet121, and ResNet50 when trained and evaluated on CT and X-ray images without data augmentation. We hope that this research will aid in improving decision making and diagnostic accuracy of medical professionals when diagnosing COVID-19.
A Real Time Method for Distinguishing COVID-19 Utilizing 2D-CNN and Transfer Learning.
Authors: AbidaSultana, MdNahiduzzaman, Sagor ChandroBakchy, Saleh MohammedShahriar, Hasibul IslamPeyal, Muhammad E HChowdhury, AmithKhandakar, MohamedArselene Ayari, MominulAhsan, JulfikarHaider
Journal: Sensors (Basel, Switzerland)

Rapid identification of COVID-19 can assist in making decisions for effective treatment and epidemic prevention. The PCR-based test is expert-dependent, is time-consuming, and has limited sensitivity. By inspecting Chest R-ray (CXR) images, COVID-19, pneumonia, and other lung infections can be detected in real time. The current, state-of-the-art literature suggests that deep learning (DL) is highly advantageous in automatic disease classification utilizing the CXR images. The goal of this study is to develop models by employing DL models for identifying COVID-19 and other lung disorders more efficiently. For this study, a dataset of 18,564 CXR images with seven disease categories was created from multiple publicly available sources. Four DL architectures including the proposed CNN model and pretrained VGG-16, VGG-19, and Inception-v3 models were applied to identify healthy and six lung diseases (fibrosis, lung opacity, viral pneumonia, bacterial pneumonia, COVID-19, and tuberculosis). Accuracy, precision, recall, f1 score, area under the curve (AUC), and testing time were used to evaluate the performance of these four models. The results demonstrated that the proposed CNN model outperformed all other DL models employed for a seven-class classification with an accuracy of 93.15% and average values for precision, recall, f1-score, and AUC of 0.9343, 0.9443, 0.9386, and 0.9939. The CNN model equally performed well when other multiclass classifications including normal and COVID-19 as the common classes were considered, yielding accuracy values of 98%, 97.49%, 97.81%, 96%, and 96.75% for two, three, four, five, and six classes, respectively. The proposed model can also identify COVID-19 with shorter training and testing times compared to other transfer learning models.
A Lightweight AMResNet Architecture with an Attention Mechanism for Diagnosing COVID-19.
Authors: QiZhou, Jamal AlzobairHammad Kowah, HuijunLi, MingqingYuan, LiheJiang, XuLiu
Journal: Current medical imaging

COVID-19 has become a worldwide epidemic disease and a new challenge for all mankind. The potential advantages of chest X-ray images on COVID-19 were discovered. We proposed a lightweight and effective Convolution Neural Network framework based on chest X-ray images for the diagnosis of COVID-19, named AMResNet.
COVID-19 has become a worldwide epidemic disease and a new challenge for all mankind. The potential advantages of chest X-ray images on COVID-19 were discovered.
A lightweight and effective Convolution Neural Network framework based on chest X-ray images for the diagnosis of COVID-19.
By introducing the channel attention mechanism and image spatial information attention mechanism, a better level can be achieved without increasing the number of model parameters.
In the collected data sets, we achieved an average accuracy rate of more than 92%, and the sensitivity and specificity of specific disease categories were also above 90%.
The convolution neural network framework can be used as a novel method for artificial intelligence to diagnose COVID-19 or other diseases based on medical images.
Deep learning approach for early prediction of COVID-19 mortality using chest X-ray and electronic health records.
Authors: Seung MinBaik, Kyung SookHong, Dong JinPark
Journal: BMC bioinformatics

An artificial-intelligence (AI) model for predicting the prognosis or mortality of coronavirus disease 2019 (COVID-19) patients will allow efficient allocation of limited medical resources. We developed an early mortality prediction ensemble model for COVID-19 using AI models with initial chest X-ray and electronic health record (EHR) data.
We used convolutional neural network (CNN) models (Inception-ResNet-V2 and EfficientNet) for chest X-ray analysis and multilayer perceptron (MLP), Extreme Gradient Boosting (XGBoost), and random forest (RF) models for EHR data analysis. The Gradient-weighted Class Activation Mapping and Shapley Additive Explanations (SHAP) methods were used to determine the effects of these features on COVID-19. We developed an ensemble model (Area under the receiver operating characteristic curve of 0.8698) using a soft voting method with weight differences for CNN, XGBoost, MLP, and RF models. To resolve the data imbalance, we conducted F1-score optimization by adjusting the cutoff values to optimize the model performance (F1 score of 0.77).
Our study is meaningful in that we developed an early mortality prediction model using only the initial chest X-ray and EHR data of COVID-19 patients. Early prediction of the clinical courses of patients is helpful for not only treatment but also bed management. Our results confirmed the performance improvement of the ensemble model achieved by combining AI models. Through the SHAP method, laboratory tests that indicate the factors affecting COVID-19 mortality were discovered, highlighting the importance of these tests in managing COVID-19 patients.