pt-sk/ml_research_abs huggingface dataset:
Deep Learning-Based Stroke Disease Prediction System Using Real-Time Bio Signals.
Authors: Yoon-AChoi, Se-JinPark, Jong-ArmJun, Cheol-SigPyo, Kang-HeeCho, Han-SungLee, Jae-HakYu
Journal: Sensors (Basel, Switzerland)

The emergence of an aging society is inevitable due to the continued increases in life expectancy and decreases in birth rate. These social changes require new smart healthcare services for use in daily life, and COVID-19 has also led to a contactless trend necessitating more non-face-to-face health services. Due to the improvements that have been achieved in healthcare technologies, an increasing number of studies have attempted to predict and analyze certain diseases in advance. Research on stroke diseases is actively underway, particularly with the aging population. Stroke, which is fatal to the elderly, is a disease that requires continuous medical observation and monitoring, as its recurrence rate and mortality rate are very high. Most studies examining stroke disease to date have used MRI or CT images for simple classification. This clinical approach (imaging) is expensive and time-consuming while requiring bulky equipment. Recently, there has been increasing interest in using non-invasive measurable EEGs to compensate for these shortcomings. However, the prediction algorithms and processing procedures are both time-consuming because the raw data needs to be separated before the specific attributes can be obtained. Therefore, in this paper, we propose a new methodology that allows for the immediate application of deep learning models on raw EEG data without using the frequency properties of EEG. This proposed deep learning-based stroke disease prediction model was developed and trained with data collected from real-time EEG sensors. We implemented and compared different deep-learning models (LSTM, Bidirectional LSTM, CNN-LSTM, and CNN-Bidirectional LSTM) that are specialized in time series data classification and prediction. The experimental results confirmed that the raw EEG data, when wielded by the CNN-bidirectional LSTM model, can predict stroke with 94.0% accuracy with low FPR (6.0%) and FNR (5.7%), thus showing high confidence in our system. These experimental results demonstrate the feasibility of non-invasive methods that can easily measure brain waves alone to predict and monitor stroke diseases in real time during daily life. These findings are expected to lead to significant improvements for early stroke detection with reduced cost and discomfort compared to other measuring techniques.
Estimation of Respiratory Rate from Thermography Using Respiratory Likelihood Index.
Authors: YudaiTakahashi, YiGu, TakaakiNakada, RyuzoAbe, ToshiyaNakaguchi
Journal: Sensors (Basel, Switzerland)

Respiration is a key vital sign used to monitor human health status. Monitoring respiratory rate (RR) under non-contact is particularly important for providing appropriate pre-hospital care in emergencies. We propose an RR estimation system using thermal imaging cameras, which are increasingly being used in the medical field, such as recently during the COVID-19 pandemic. By measuring temperature changes during exhalation and inhalation, we aim to track the respiration of the subject in a supine or seated position in real-time without any physical contact. The proposed method automatically selects the respiration-related regions from the detected facial regions and estimates the respiration rate. Most existing methods rely on signals from nostrils and require close-up or high-resolution images, while our method only requires the facial region to be captured. Facial region is detected using YOLO v3, an object detection model based on deep learning. The detected facial region is divided into subregions. By calculating the respiratory likelihood of each segmented region using the newly proposed index, called the Respiratory Quality Index, the respiratory region is automatically selected and the RR is estimated. An evaluation of the proposed RR estimation method was conducted on seven subjects in their early twenties, with four 15 s measurements being taken. The results showed a mean absolute error of 0.66 bpm. The proposed method can be useful as an RR estimation method.
Artificial Neural Network-Based Deep Learning Model for COVID-19 Patient Detection Using X-Ray Chest Images.
Authors: MohammadShorfuzzaman, MehediMasud, HeshamAlhumyani, DivyaAnand, AmanSingh
Journal: Journal of healthcare engineering

The world is experiencing an unprecedented crisis due to the coronavirus disease (COVID-19) outbreak that has affected nearly 216 countries and territories across the globe. Since the pandemic outbreak, there is a growing interest in computational model-based diagnostic technologies to support the screening and diagnosis of COVID-19 cases using medical imaging such as chest X-ray (CXR) scans. It is discovered in initial studies that patients infected with COVID-19 show abnormalities in their CXR images that represent specific radiological patterns. Still, detection of these patterns is challenging and time-consuming even for skilled radiologists. In this study, we propose a novel convolutional neural network- (CNN-) based deep learning fusion framework using the transfer learning concept where parameters (weights) from different models are combined into a single model to extract features from images which are then fed to a custom classifier for prediction. We use gradient-weighted class activation mapping to visualize the infected areas of CXR images. Furthermore, we provide feature representation through visualization to gain a deeper understanding of the class separability of the studied models with respect to COVID-19 detection. Cross-validation studies are used to assess the performance of the proposed models using open-access datasets containing healthy and both COVID-19 and other pneumonia infected CXR images. Evaluation results show that the best performing fusion model can attain a classification accuracy of 95.49% with a high level of sensitivity and specificity.
An Overview of Deep Learning Techniques on Chest X-Ray and CT Scan Identification of COVID-19.
Authors: Woan ChingSerena Low, Joon HuangChuah, Clarence Augustine T HTee, ShaziaAnis, Muhammad AliShoaib, AmirFaisal, AziraKhalil, Khin WeeLai
Journal: Computational and mathematical methods in medicine

Pneumonia is an infamous life-threatening lung bacterial or viral infection. The latest viral infection endangering the lives of many people worldwide is the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes COVID-19. This paper is aimed at detecting and differentiating viral pneumonia and COVID-19 disease using digital X-ray images. The current practices include tedious conventional processes that solely rely on the radiologist or medical consultant's technical expertise that are limited, time-consuming, inefficient, and outdated. The implementation is easily prone to human errors of being misdiagnosed. The development of deep learning and technology improvement allows medical scientists and researchers to venture into various neural networks and algorithms to develop applications, tools, and instruments that can further support medical radiologists. This paper presents an overview of deep learning techniques made in the chest radiography on COVID-19 and pneumonia cases.
Artificial Intelligence and COVID-19: Deep Learning Approaches for Diagnosis and Treatment.
Authors: Mohammad BehdadJamshidi, AliLalbakhsh, JakubTalla, ZdenekPeroutka, FarimahHadjilooei, PedramLalbakhsh, MortezaJamshidi, Luigi LaSpada, MirhamedMirmozafari, MojganDehghani, AsalSabet, SaeedRoshani, SobhanRoshani, NimaBayat-Makou, BahareMohamadzade, ZahraMalek, AlirezaJamshidi, SarahKiani, HamedHashemi-Dezaki, WahabMohyuddin
Journal: IEEE access : practical innovations, open solutions

COVID-19 outbreak has put the whole world in an unprecedented difficult situation bringing life around the world to a frightening halt and claiming thousands of lives. Due to COVID-19's spread in 212 countries and territories and increasing numbers of infected cases and death tolls mounting to 5,212,172 and 334,915 (as of May 22 2020), it remains a real threat to the public health system. This paper renders a response to combat the virus through Artificial Intelligence (AI). Some Deep Learning (DL) methods have been illustrated to reach this goal, including Generative Adversarial Networks (GANs), Extreme Learning Machine (ELM), and Long/Short Term Memory (LSTM). It delineates an integrated bioinformatics approach in which different aspects of information from a continuum of structured and unstructured data sources are put together to form the user-friendly platforms for physicians and researchers. The main advantage of these AI-based platforms is to accelerate the process of diagnosis and treatment of the COVID-19 disease. The most recent related publications and medical reports were investigated with the purpose of choosing inputs and targets of the network that could facilitate reaching a reliable Artificial Neural Network-based tool for challenges associated with COVID-19. Furthermore, there are some specific inputs for each platform, including various forms of the data, such as clinical data and medical imaging which can improve the performance of the introduced approaches toward the best responses in practical applications.
Coronavirus disease (COVID-19) detection using X-ray images and enhanced DenseNet.
Authors: SalehAlbahli, NasirAyub, MuhammadShiraz
Journal: Applied soft computing

The 2019 novel coronavirus (COVID-19) originating from China, has spread rapidly among people living in other countries. According to the World Health Organization (WHO), by the end of January, more than 104 million people have been affected by COVID-19, including more than 2 million deaths. The number of COVID-19 test kits available in hospitals is reduced due to the increase in regular cases. Therefore, an automatic detection system should be introduced as a fast, alternative diagnostic to prevent COVID-19 from spreading among humans. For this purpose, three different BiT models: DenseNet, InceptionV3, and Inception-ResNetV4 have been proposed in this analysis for the diagnosis of patients infected with coronavirus pneumonia using X-ray radiographs in the chest. These three models give and examine Receiver Operating Characteristic (ROC) analyses and uncertainty matrices, using 5-fold cross-validation. We have performed the simulations which have visualized that the pre-trained DenseNet model has the best classification efficiency with 92% among two other models proposed (83.47% accuracy for inception V3 and 85.57% accuracy for Inception-ResNetV4).
COVID-19 Diagnosis Using an Enhanced Inception-ResNetV2 Deep Learning Model in CXR Images.
Authors: MadallahAlruwaili, AbdulazizShehab, SamehAbd El-Ghany
Journal: Journal of healthcare engineering

The COVID-19 pandemic has a significant negative effect on people's health, as well as on the world's economy. Polymerase chain reaction (PCR) is one of the main tests used to detect COVID-19 infection. However, it is expensive, time-consuming, and lacks sufficient accuracy. In recent years, convolutional neural networks have grabbed many researchers' attention in the machine learning field, due to its high diagnosis accuracy, especially the medical image recognition. Many architectures such as Inception, ResNet, DenseNet, and VGG16 have been proposed and gained an excellent performance at a low computational cost. Moreover, in a way to accelerate the training of these traditional architectures, residual connections are combined with inception architecture. Therefore, many hybrid architectures such as Inception-ResNetV2 are further introduced. This paper proposes an enhanced Inception-ResNetV2 deep learning model that can diagnose chest X-ray (CXR) scans with high accuracy. Besides, a Grad-CAM algorithm is used to enhance the visualization of the infected regions of the lungs in CXR images. Compared with state-of-the-art methods, our proposed paper proves superiority in terms of accuracy, recall, precision, and
Segmentation and quantification of COVID-19 infections in CT using pulmonary vessels extraction and deep learning.
Authors: João O BDiniz, Darlan B PQuintanilha, Antonino CSantos Neto, Giovanni L Fda Silva, Jonnison LFerreira, Stelmo M BNetto, José D LAraújo, Luana BDa Cruz, Thamila F BSilva, Caio Mda S Martins, Marcos MFerreira, Venicius GRego, José M CBoaro, Carolina L SCipriano, Aristófanes CSilva, Anselmo Cde Paiva, Geraldo BrazJunior, João D Sde Almeida, Rodolfo ANunes, RobertoMogami, MGattass
Journal: Multimedia tools and applications

At the end of 2019, the World Health Organization (WHO) reported pneumonia that started in Wuhan, China, as a global emergency problem. Researchers quickly advanced in research to try to understand this COVID-19 and sough solutions for the front-line professionals fighting this fatal disease. One of the tools to aid in the detection, diagnosis, treatment, and prevention of this disease is computed tomography (CT). CT images provide valuable information on how this new disease affects the lungs of patients. However, the analysis of these images is not trivial, especially when researchers are searching for quick solutions. Detecting and evaluating this disease can be tiring, time-consuming, and susceptible to errors. Thus, in this study, we aim to automatically segment infections caused by COVID19 and provide quantitative measures of these infections to specialists, thus serving as a support tool. We use a database of real clinical cases from Pedro Ernesto University Hospital of the State of Rio de Janeiro, Brazil. The method involves five steps: lung segmentation, segmentation and extraction of pulmonary vessels, infection segmentation, infection classification, and infection quantification. For the lung segmentation and infection segmentation tasks, we propose modifications to the traditional U-Net, including batch normalization, leaky ReLU, dropout, and residual block techniques, and name it as Residual U-Net. The proposed method yields an average Dice value of 77.1% and an average specificity of 99.76%. For quantification of infectious findings, the proposed method achieves results like that of specialists, and no measure presented a value of
Dense GAN and multi-layer attention based lesion segmentation method for COVID-19 CT images.
Authors: JuZhang, LundunYu, DechengChen, WeidongPan, ChaoShi, YanNiu, XinweiYao, XiaobinXu, YunCheng
Journal: Biomedical signal processing and control

As the COVID-19 virus spreads around the world, testing and screening of patients have become a headache for governments. With the accumulation of clinical diagnostic data, the imaging big data features of COVID-19 are gradually clear, and CT imaging diagnosis results become more important. To obtain clear lesion information from the CT images of patients' lungs is helpful for doctors to adopt effective medical methods, and at the same time, is helpful to screen the patients with real infection. Deep learning image segmentation is widely used in the field of medical image segmentation. However, there are some challenges in using deep learning to segment the lung lesions of COVID-19 patients. Since image segmentation requires the labeling of lesion information on a pixel by pixel basis, most professional radiologists need to screen and diagnose patients on the front line, and they do not have enough energy to label a large amount of image data. In this paper, an improved Dense GAN to expand data set is developed, and a multi-layer attention mechanism method, combined with U-Net's COVID-19 pulmonary CT image segmentation, is proposed. The experimental results showed that the segmentation method proposed in this paper improved the segmentation accuracy of COVID-19 pulmonary medical CT image by comparing with other image segmentation methods.
Medical imaging and computational image analysis in COVID-19 diagnosis: A review.
Authors: ShahabedinNabavi, AzarEjmalian, Mohsen EbrahimiMoghaddam, Ahmad AliAbin, Alejandro FFrangi, MohammadMohammadi, Hamidreza SalighehRad
Journal: Computers in biology and medicine

Coronavirus disease (COVID-19) is an infectious disease caused by a newly discovered coronavirus. The disease presents with symptoms such as shortness of breath, fever, dry cough, and chronic fatigue, amongst others. The disease may be asymptomatic in some patients in the early stages, which can lead to increased transmission of the disease to others. This study attempts to review papers on the role of imaging and medical image computing in COVID-19 diagnosis. For this purpose, PubMed, Scopus and Google Scholar were searched to find related studies until the middle of 2021. The contribution of this study is four-fold: 1) to use as a tutorial of the field for both clinicians and technologists, 2) to comprehensively review the characteristics of COVID-19 as presented in medical images, 3) to examine automated artificial intelligence-based approaches for COVID-19 diagnosis, 4) to express the research limitations in this field and the methods used to overcome them. Using machine learning-based methods can diagnose the disease with high accuracy from medical images and reduce time, cost and error of diagnostic procedure. It is recommended to collect bulk imaging data from patients in the shortest possible time to improve the performance of COVID-19 automated diagnostic methods.
Transfer learning-based approach for detecting COVID-19 ailment in lung CT scan.
Authors: VinayArora, Eddie Yin-KweeNg, Rohan SinghLeekha, MedhaviDarshan, ArshdeepSingh
Journal: Computers in biology and medicine

This research work aims to identify COVID-19 through deep learning models using lung CT-SCAN images. In order to enhance lung CT scan efficiency, a super-residual dense neural network was applied. The experimentation has been carried out using benchmark datasets like SARS-COV-2 CT-Scan and Covid-CT Scan. To mark COVID-19 as positive or negative for the improved CT scan, existing pre-trained models such as XceptionNet, MobileNet, InceptionV3, DenseNet, ResNet50, and VGG (Visual Geometry Group)16 have been used. Taking CT scans with super resolution using a residual dense neural network in the pre-processing step resulted in improving the accuracy, F1 score, precision, and recall of the proposed model. On the dataset Covid-CT Scan and SARS-COV-2 CT-Scan, the MobileNet model provided a precision of 94.12% and 100% respectively.
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review.
Authors: YiGuo, YahanZhang, TianchenLyu, MattiaProsperi, FeiWang, HuaXu, JiangBian
Journal: Journal of the American Medical Informatics Association : JAMIA

To summarize how artificial intelligence (AI) is being applied in COVID-19 research and determine whether these AI applications integrated heterogenous data from different sources for modeling.
We searched 2 major COVID-19 literature databases, the National Institutes of Health's LitCovid and the World Health Organization's COVID-19 database on March 9, 2021. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guideline, 2 reviewers independently reviewed all the articles in 2 rounds of screening.
In the 794 studies included in the final qualitative analysis, we identified 7 key COVID-19 research areas in which AI was applied, including disease forecasting, medical imaging-based diagnosis and prognosis, early detection and prognosis (non-imaging), drug repurposing and early drug discovery, social media data analysis, genomic, transcriptomic, and proteomic data analysis, and other COVID-19 research topics. We also found that there was a lack of heterogenous data integration in these AI applications.
Risk factors relevant to COVID-19 outcomes exist in heterogeneous data sources, including electronic health records, surveillance systems, sociodemographic datasets, and many more. However, most AI applications in COVID-19 research adopted a single-sourced approach that could omit important risk factors and thus lead to biased algorithms. Integrating heterogeneous data for modeling will help realize the full potential of AI algorithms, improve precision, and reduce bias.
There is a lack of data integration in the AI applications in COVID-19 research and a need for a multilevel AI framework that supports the analysis of heterogeneous data from different sources.
Artificial Intelligence and Medical Internet of Things Framework for Diagnosis of Coronavirus Suspected Cases.
Authors: Ahmed IIskanderani, Ibrahim MMehedi, Abdulah JezaAljohani, MohammadShorfuzzaman, FarzanaAkther, ThangamPalaniswamy, Shaikh AbdulLatif, AbdulLatif, AftabAlam
Journal: Journal of healthcare engineering

The world has been facing the COVID-19 pandemic since December 2019. Timely and efficient diagnosis of COVID-19 suspected patients plays a significant role in medical treatment. The deep transfer learning-based automated COVID-19 diagnosis on chest X-ray is required to counter the COVID-19 outbreak. This work proposes a real-time Internet of Things (IoT) framework for early diagnosis of suspected COVID-19 patients by using ensemble deep transfer learning. The proposed framework offers real-time communication and diagnosis of COVID-19 suspected cases. The proposed IoT framework ensembles four deep learning models such as InceptionResNetV2, ResNet152V2, VGG16, and DenseNet201. The medical sensors are utilized to obtain the chest X-ray modalities and diagnose the infection by using the deep ensemble model stored on the cloud server. The proposed deep ensemble model is compared with six well-known transfer learning models over the chest X-ray dataset. Comparative analysis revealed that the proposed model can help radiologists to efficiently and timely diagnose the COVID-19 suspected patients.
D2A U-Net: Automatic segmentation of COVID-19 CT slices based on dual attention and hybrid dilated convolution.
Authors: XiangyuZhao, PengZhang, FanSong, GuangdaFan, YangyangSun, YujiaWang, ZheyuanTian, LuqiZhang, GuangleiZhang
Journal: Computers in biology and medicine

Coronavirus Disease 2019 (COVID-19) has become one of the most urgent public health events worldwide due to its high infectivity and mortality. Computed tomography (CT) is a significant screening tool for COVID-19 infection, and automatic segmentation of lung infection in COVID-19 CT images can assist diagnosis and health care of patients. However, accurate and automatic segmentation of COVID-19 lung infections is faced with a few challenges, including blurred edges of infection and relatively low sensitivity. To address the issues above, a novel dilated dual attention U-Net based on the dual attention strategy and hybrid dilated convolutions, namely D2A U-Net, is proposed for COVID-19 lesion segmentation in CT slices. In our D2A U-Net, the dual attention strategy composed of two attention modules is utilized to refine feature maps and reduce the semantic gap between different levels of feature maps. Moreover, the hybrid dilated convolutions are introduced to the model decoder to achieve larger receptive fields, which refines the decoding process. The proposed method is evaluated on an open-source dataset and achieves a Dice score of 0.7298 and recall score of 0.7071, which outperforms the popular cutting-edge methods in the semantic segmentation. The proposed network is expected to be a potential AI-based approach used for the diagnosis and prognosis of COVID-19 patients.