In Season 9, it is revealed that J.D. and Elliot are in fact married and expecting a child. This is punctuated by an extremely awkward morning ritual in front of Elliot's class where J.D. kisses her stomach for every month she is pregnant and says ''and thank you for making mommy's boobs bigger''; Elliot then puts her breasts on his head. In their final appearance together, they go on a ''babymoon'', a romantic getaway for expecting parents.

Is it true that scrubs do elliot and jd end up together?
yes