A same meaning or not problem:
The trip begins from Mumbai to Goa via Nashik , Ajanta Ellora Caves , Kolhapur , Sindhudurg and back .
The journey starts from Mumbai to Kolhapur , Sindhudurg via Goa , Ajanta Ellora , Nashik and back .
****
[A]: no

A same meaning or not problem:
The mountainous area is irrigated with a municipal territory within the central cordillera of the Andes and both by the rivers Cauca and Tonusco .
The municipal area is , with a mountainous territory within the Central Cordillera of the Andes and watered by both the Cauca and the Tonusco Rivers .
****
[A]: no

A same meaning or not problem:
Although the two sections appear in the full text in modern editions , chapter X has also been published separately , both as a separate book and in collections .
Although the two sections appear in full text in modern editions , Chapter X has also been published separately , both as a book of its own and in collections .
****
[A]: yes

A same meaning or not problem:
Itami-go was a part of the castle of Arioka , which ruled Araki Murashige under Oda Nobunaga .
Itami-go was a part of Castle Arioka which Araki Murashige ruled under Oda Nobunaga .
****
[A]:
yes