In this task, you are given a part of an article. Your task is to generate headline (title) for this text. Preferred headlines are under fifteen words.

[EX Q]: Alignment-free sequence analysis approaches provide important alternatives over multiple sequence alignment (MSA) in biological sequence analysis because alignment-free approaches have low computation complexity and are not dependent on high level of sequence identity, however, most of the existing alignment-free methods do not employ true full information content of sequences and thus can not accurately reveal similarities and differences among DNA sequences. We present a novel alignment-free computational method for sequence analysis based on Ramanujan-Fourier transform (RFT), in which complete information of DNA sequences is retained. We represent DNA sequences as four binary indicator sequences and apply RFT on the indicator sequences to convert them into frequency domain. The Euclidean distance of the complete RFT coefficients of DNA sequences are used as similarity measure. To address the different lengths in Euclidean space of RFT coefficients, we pad zeros to short DNA binary sequences so that the binary sequences equal the longest length in the comparison sequence data. Thus, the DNA sequences are compared in the same dimensional frequency space without information loss. We demonstrate the usefulness of the proposed method by presenting experimental results on hierarchical clustering of genes and genomes. The proposed method opens a new channel to biological sequence analysis, classification, and structural module identification.
[EX A]: A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform

[EX Q]: This paper investigates stochastic and adversarial combinatorial multi-armed bandit problems. In the stochastic setting, we first derive problem-specific regret lower bounds, and analyze how these bounds scale with the dimension of the decision space. We then propose COMBUCB, algorithms that efficiently exploit the combinatorial structure of the problem, and derive finite-time upper bound on their regrets. These bounds improve over regret upper bounds of existing algorithms, and we show numerically thatCOMBUCB significantly outperforms any other algorithm. In the adversarial setting, we propose two simple algorithms, namely COMBEXP-1 and COMBEXP-2 for semi-bandit and bandit feedback, respectively. Their regrets have similar scaling as state-of-the-art algorithms, in spite of the simplicity of their implementation.
[EX A]: Stochastic and Adversarial Combinatorial Bandits

[EX Q]: Dependency parsers are among the most crucial tools in natural language processing as they have many important applications in downstream tasks such as information retrieval, machine translation and knowledge acquisition. We introduce the Yara Parser, a fast and accurate open-source dependency parser based on the arc-eager algorithm and beam search. It achieves an unlabeled accuracy of 93.32 on the standard WSJ test set which ranks it among the top dependency parsers. At its fastest, Yara can parse about 4000 sentences per second when in greedy mode (1 beam). When optimizing for accuracy (using 64 beams and Brown cluster features), Yara can parse 45 sentences per second. The parser can be trained on any syntactic dependency treebank and different options are provided in order to make it more flexible and tunable for specific tasks. It is released with the Apache version 2.0 license and can be used for both commercial and academic purposes. The parser can be found at https: //github.com/yahoo/YaraParser.
[EX A]:
Yara Parser: A Fast and Accurate Dependency Parser