primordic/IssueDupesLite huggingface dataset:
Repository: rust-lang/rust-playground

Issue #58: Dockerize everything
Created: 2016-09-06T16:01:04Z
It would be nice if the whole playground would be encapsulated into a docker image. If that image was published on dockerhub, installation would boild down to a single docker run command.

Duplicate issue #233: Shall there be a rust-playground Docker image on Docker hub?
Created: 2017-11-23T01:21:40Z
I see mentions of Docker in .travis.yml. But searching Docker Hub for playground, rust, integer32 doesn't bring anything of interest.
Maybe there should be official easy-to-deploy images for rust-playground? Just start it and point browser to 127.0.0.1:1234 and start playing. Sandbox and things are handled inside automatically.
The list of included crates should be easily configurable parameter (not requiring container rebuild). Ideally private registries should be supported too.

Closing comment (2017-11-23T03:27:59Z): The primary playground containers are at https://hub.docker.com/r/shepmaster/rust-stable/ (and -beta, -nightly, rustfmt, clippy, etc.)
Duplicate of #58
Repository: rust-lang/rust-playground

Issue #302: Add ability to resize output window
Created: 2018-04-20T22:37:38Z
Feature request:  ability to resize the output window

Duplicate issue #673: Make Window Resizable
Created: 2021-01-20T12:26:43Z
I really like ability to switch the playgrounds orientation to either vertical or horizontal. A step further will be to make provision for resizing both panels.
I sometimes find myself having to minimize/maximize the terminal panel to have more code space.
E.g.

Small screen: I might want the code section to be a lot wider while the terminal section a lot smaller (vertical orientation)
Large screen: I could leave it on the default.

This is just an improvement to #162.
If this feature is deemed fit, I could work on a PR for it.

Closing comment (2021-01-20T15:44:44Z): Duplicate of #302
Repository: rvm/rvm

Issue #1221: RVM fails to set variables correctly when doing `rvm gemset copy` commands
Created: 2012-10-12T14:38:22Z
RVM reports:
Error running '' under ,

at the end of a rvm gemset copy X@gs X#gs

Duplicate issue #1227: jRuby-head does not install
Created: 2012-10-13T04:17:31Z
Tried to upgrade from jRuby 1.6.3 to jruby-head
Here's a transcript from the console:
Moving gemsets...
Moving jruby-1.6.3 to jruby-head
Making gemset jruby-head pristine.
Error running '' under ,
please read /Users/arlenwalker/.rvm/log//gemset.pristine.log
Moving jruby-1.6.3@global to jruby-head@global
Making gemset jruby-head@global pristine.
Error running '' under ,
please read /Users/arlenwalker/.rvm/log//gemset.pristine.log
Do you wish to move over aliases? (Y/n): Y
Do you wish to move over wrappers? (Y/n): Y
Do you also wish to completely remove jruby-1.6.3 (inc. archive)? (Y/n): Y
this gist is log file:
https://gist.github.com/3883190
Both jruby-1.6.8 and jruby-1.7.0RC2 installed fine, just the upgrade had an issue
Running MacBookPro OSX 10.8.2
rvm 1.6.12 (master)

Closing comment (2012-10-13T14:47:27Z): seams similar / related to #1221
Repository: rvm/rvm

Issue #3099: Install Ruby 1.9.2 on 10.10 (Yosemite)
Created: 2014-10-20T19:21:53Z
After upgrading to RVM (1.25.33 (master)) as noted in issue #3906 I am still not able to compile Ruby 1.9.2 (specifically ruby-1.9.2-p330) on 10.10.
$ system_profiler SPSoftwareDataType
Software:

    System Software Overview:

      System Version: OS X 10.10 (14A389)
      Kernel Version: Darwin 14.0.0
      Boot Volume:
      Boot Mode: Normal
      Computer Name:
      User Name: Ryan Lovelett (ryan)
      Secure Virtual Memory: Enabled
      Time since boot: 6:39

Running rvm install 1.9.2 results in an error (malloc: *** error for object 0x7f8f92802808: incorrect checksum for freed object - object was probably modified after being freed.). A gist of the make.log can be found here.
EDIT: Fixed link to other issue. Added the error message for anyone who might search for this issue via the error message.

Duplicate issue #3480: build working ruby-1.9.2-p330 on OSX 10.10
Created: 2015-08-02T11:22:03Z
i had ruby 1.8.6 and wanted to install 1.9.2 but it gave me the below error. Please help
$ rvm install 1.9.2
Searching for binary rubies, this might take some time.
No binary rubies available for: osx/10.10/x86_64/ruby-1.9.2-p330.
It is not possible to build movable binaries for rubies 1.8-1.9.2, but you can do it for your system only.
Continuing with compilation. Please read 'rvm help mount' to get more information on binary rubies.
RVM does not know how to build working ruby-1.9.2-p330 on OSX 10.10,
if you know please let us know by opening a ticket with instructions here:
https://github.com/wayneeseguin/rvm/issues

$

Closing comment (2015-08-12T20:17:42Z): Closing as a duplicate of #3099. You may be able to get 1.9.2 to compile with a pkgsrc gcc. Although also past end-of-life, 1.9.3 has been much more recently patched and compiles for me on OS X.
Ruby 1.9 is past end-of-life and has known security vulnerabilities. It also doesn't receive bug fixes so it increasingly gets more and more difficult to install on various platforms as time goes by. Ruby 2.0 is in maintenance mode. If you can, switch to Ruby 2.1+.
Repository: rvm/rvm

Issue #2659: Executing a set ruby command with `.` does not work properly
Created: 2014-02-26T20:17:06Z
To test if the Ruby string in .ruby-version is installed, it was suggested to do:
rvm [ruby] do true
Where [ruby] is a known Ruby version string or a path to a project (., /path/to/my_proj).  If [ruby] is a path, it should use project's version of Ruby (via the Ruby project file, ex. .ruby-version).
But,
rvm ruby do true ==> Please note that 'rvm ruby …' was removed, try 'ruby do true'.
And also,
rvm . do true ==> no output and then echo $? ==> 0.
But,
rvm $(cat .ruby_version) do true ==> Ruby ruby-1.9.3-p448foobar is not installed. and then echo $? ==> 1, as expected/wanted.
rvm info rvm

ruby-1.9.3-p448:

  rvm:
    version:      "rvm 1.25.19 (latest) by Wayne E. Seguin <wayneeseguin@gmail.com>, Michal Papis <mpapis@gmail.com> [https://rvm.io/]"
    updated:      "1 hour 28 minutes 14 seconds ago"
    path:         "/Users/testuser/.rvm"

rvm --debug . do true
Running /Users/testuser/.rvm/hooks/after_use_maglev
__rvm_rm_rf already gone: /Users/testuser/.rvm/tmp/9765*

Output from head:
$ rvm get head
$ rvm reload
$ rvm info rvm

ruby-1.9.3-p448@foo:

  rvm:
    version:      "rvm 1.25.19 (master) by Wayne E. Seguin <wayneeseguin@gmail.com>, Michal Papis <mpapis@gmail.com> [https://rvm.io/]"
    updated:      "3 minutes 9 seconds ago"
    path:         "/Users/testuser/.rvm"

$ rvm --debug . do true
Running /Users/testuser/.rvm/hooks/after_use_maglev
__rvm_rm_rf already gone: /Users/testuser/.rvm/tmp/647*

Duplicate issue #2660: http://rvm.io/set/do behaves differently when given a directory vs version string
Created: 2014-02-27T19:31:53Z
@wayneeseguin my machine does not have 1.8.7 installed.
Good:
~ rvm 1.8.7 do ruby --version
Ruby ruby-1.8.7-p374 is not installed. # 1.8.7 is not installed, RVM complains
Bad:
~ echo '1.8.7' > .ruby-version
~ rvm $PWD do ruby --version
ruby 1.9.3p545 (2014-02-24 revision 45159) [x86_64-darwin13.1.0] # 1.8.7 is not installed, but RVM silently uses another random ruby
Good:
~ echo '2.1' > .ruby-version
~ rvm $PWD do ruby --version
ruby 2.1.1p76 (2014-02-24 revision 45161) [x86_64-darwin13.0] # 2.1 is installed, RVM uses it

Closing comment (2014-02-28T06:29:10Z): closing as duplicate of #2659
Repository: rvm/rvm

Issue #3038: Heroku Toolbelt broke the PATH Variable, and rvm keeps telling me to update PATH
Created: 2014-09-18T16:04:18Z
As /usr/local/heroku/bin is now in the first place in my PATH variable, rvm keeps complaining that the PATH is broken.
How can I move heroku's path variable after rvm?
Thanks in advance.

Duplicate issue #3268: RVM suggesting to `rvm use rvm`
Created: 2015-01-16T10:46:29Z
When cd'ing into a project directory, I get the following warning:
Warning! PATH is not properly set up, $GEM_HOME is not set,
         usually this is caused by shell initialization files - check them for 'PATH=...' entries,
         it might also help to re-add RVM to your dotfiles: 'rvm get stable --auto-dotfiles',
         to fix temporarily in this shell session run: 'rvm use rvm'.

however:
$GEM_HOME and $PATH are set sensibly (before and after cd).
A solution is to remove the .rvmrc from the directory, leaving only .ruby-version and .ruby-gemset.
Our .rvmrc reads the .ruby-version and .ruby-gemset and also adds some shell aliases and functions related to the project:
rvm $(cat .ruby-version)@$(cat .ruby-gemset) --create

# useful aliases may be added here
alias cu='truncate --size 0 log/*.log; clear; zeus cucumber -r features/'

Of course, rvm use rvm does neither make sense nor work. Well, at least until there is a ruby called "rvm", which will break a lot things anyway 😄
What are we doing wrong?

Closing comment (2015-08-20T22:58:00Z): Closing as a duplicate of #3038 (some solutions are discussed there).
Repository: rvm/rvm

Issue #1070: rvm pkg install should respect --32 / --64 / --universal flags
Created: 2012-08-15T12:45:20Z
Add --32 / --64 / --universal flags for rvm pkg install to enable use of fat binaries for packages such as libyaml.

Duplicate issue #1358: need ability to install universal libyaml
Created: 2012-12-03T22:41:26Z
when I run rvm pkg install libyaml --universal it still only installs the x86 version of libyaml.
Here's what's happening:
-> file /Users/jkrueger/.rvm/usr/lib/libyaml.dylib
/Users/jkrueger/.rvm/usr/lib/libyaml.dylib: Mach-O 64-bit dynamically linked shared library x86_64


I carry the old oracle ball & chain, and need to be able to build x32 versions of a bunch of stuff on lion.
I originally found a reference on stackoverflow at http://stackoverflow.com/questions/11954193/using-multiple-versions-of-libyaml-with-rvm

Closing comment (2012-12-04T14:10:33Z): I think this may be a duplicate of #1070
Repository: rvm/rvm

Issue #2606: Still vulnerable libyaml after RVM update and ruby recompilation
Created: 2014-02-07T09:47:22Z
Environment

Arch linux
No libyaml system package installed
Earlier RVM version: 1.24.x
Ruby versions installed: ruby-2.0.0-p247, ruby-2.0.0-p353, ruby-2.1.0

Update procedure
According to https://groups.google.com/forum/#!topic/rubysec-announce/3sx25iR7yHQ
Users who installed Rubies using RVM, but for whom libyaml was not automatically installed from the package manager, should simply update RVM. This will cause RVM to update its internal version of libyaml to 0.1.5.  The updated version of libyaml will then be used for all rubies installed currently and in the future.
rvm get stable
Result
After update procedure, reinstalling ruby and reloading rvm libyaml is still in 1.4.0 version:
rvm get stable
rvm reinstall 2.1.0 --disable-binary
rvm reload
ruby -r yaml -e 'puts Psych::LIBYAML_VERSION'
0.1.4

Other ruby versions installed
The result is the same when there are other ruby versions in rvm or when there is the single 2.1.0 recompilled version.

Duplicate issue #2753: New binaries for CVE-2014-2525
Created: 2014-04-03T21:27:11Z
As discussed on IRC, new binaries are needed to ensure external libyaml is used. /cc @ghedamat @mpapis

Closing comment (2014-06-30T20:41:02Z): @mpapis It was Ubuntu 12.04 LTS 64-bit server.
It is similar to #2606, but I had not tried reinstalling the rubies.  I was just following the instructions from here: https://groups.google.com/forum/#!topic/rubysec-announce/3sx25iR7yHQ.
I decided to reinstall the ruby to see if the LibYAML version would update and it did so successfully. should reinstallation of the ruby be necessary? Sorry, I'm not sure how the external libraries are linked in RVM?
Repository: rvm/rvm

Issue #2761: Issues with installing ruby-head-clang
Created: 2014-04-07T20:44:39Z
We have ruby-head-clang precompiled. When I try to install the binary, I run into the following issues:

It downloads ruby-head instead
It discovers that there is a mismatch, then starts compiling ruby-head-clang from source, even though we passed the --binary flag

These are both things I don't want to happen.
Searching for binary rubies, this might take some time.
Found remote file https://s3.amazonaws.com/travis-rubies/binaries/osx/10.9/x86_64/ruby-head.tar.bz2
Checking requirements for osx.
Certificates in '/usr/local/etc/openssl/cert.pem' already are up to date.
Requirements installation successful.
ruby-head-clang - #configure
ruby-head-clang - #download
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 6680k  100 6680k    0     0   430k      0  0:00:15  0:00:15 --:--:--  280k
Downloaded archive checksum did not match, archive was removed!
If you wish to continue with not matching download add '--verify-downloads 2' after the command.

Downloading https://s3.amazonaws.com/travis-rubies/binaries/osx/10.9/x86_64/ruby-head.tar.bz2 failed.
Mounting remote ruby failed, trying to compile.
Checking requirements for osx.
Certificates in '/usr/local/etc/openssl/cert.pem' already are up to date.
Requirements installation successful.
Installing Ruby from source to: /Users/konstantin/.rvm/rubies/ruby-head-clang, this may take a while depending on your cpu(s)...
Cloning from git://github.com/ruby/ruby.git, this may take a while depending on your connection - please wait
^C%

Duplicate issue #2762: Can't install from binary with patches
Created: 2014-04-07T22:13:47Z
I followed the instructions for creating a binary for ruby-1.9.3-p545-railsexpress, and added it to my user/remote, db, md5, and sha512 files.
When I try to install it, rvm removes the patch name from the download url:
Remote file does not exist http://domicile.corp/rvm/osx/10.9/x86_64/ruby-1.9.3-p545.tar.bz2
No remote file name found
No binary rubies available for: osx/10.9/x86_64/ruby-1.9.3-p545.
Continuing with compilation. Please read 'rvm help mount' to get more information on binary rubies.

It looks like the fix for #2469 caused this to break; it works correctly if I revert this commit:
891e933

Closing comment (2014-04-09T21:24:25Z): duplicate of #2761 - thanks for the extra details
Repository: sabeechen/hassio-google-drive-backup

Issue #586: add support to home assistant core / container
Created: 2022-04-06T20:09:00Z
starting from version 2022.4, backups are supported for core and containers...
https://www.home-assistant.io/blog/2022/04/06/release-20224/#backups-for-home-assistant-core--container-installs
it would be great to add support to this methods.
This addon is so important that it's the only reason why i still use a supervised installation instead of moving fully to kubernetes (or before then docker-compose)

Duplicate issue #757: Addon for Dockerized Hassio
Created: 2022-11-26T22:58:00Z
Hi everyone, i was wondering if there exist a version of the addon that can work with the dockerized version of Home Assistant (i.e. when Add-on Store does not show up in Home Assistant side panel)

Closing comment (2022-11-27T00:56:29Z): Duplicate #586
Unfortunately, no.  The addon is very tightly coupled with the supervisor (aka hassio).  Id like for it to work within Home Assistant by itself, but its surprisingly complicated effort that I won't have complete for a long time.
Repository: sabeechen/hassio-google-drive-backup

Issue #115: Transient connection errors display the raw exception. 
Created: 2019-10-21T16:24:22Z
Transient connection errors (eg connection timeouts, connection aborted, broken pipe errors) display the raw exception message in the addon UI and recommend filing an issue on Github.  Since these errors are expected to happen occasionally, the UI should instead display a dialog explaining what happened and detailing that it will retry soon.

Duplicate issue #111: An unexpected error occurred: ('Connection aborted.', BrokenPipeError(32, 'Broken pipe'))
Created: 2019-10-19T09:52:52Z
Please add some information about your configuration and the problem you ran into here. More info really helps speed up debugging, and if you don't make it clear whats happening you're much more likely to get snarky comment from the dev before he helps.  Remember that its just one guy back here doing all of this and he's not really under any obligation to put up with your shit if you're disrespectful.  If english isn't your first language, don't sweat it.  Just try to be clear and I'll do the same for you.  Some things you might consider including:

What were you doing when the problem happened?
A screenshot if its something visual.
What configuration options are you using with the add-on?
What logs is the add-on printing out?  You can see the detailed logs by clicking "Logs" at the top right of the web-UI.
Are there any problematic logs from the Hassio supervisor?  You can get to them from the Home Assistant Interface from "Hass.io" > "System" > "System Log"

Traceback (most recent call last):
File "/app/backup/coordinator.py", line 102, in _sync
self._buildModel().sync(self._time.now())
File "/app/backup/model.py", line 145, in sync
upload.addSource(self.dest.save(upload, self.source.read(upload)))
File "/app/backup/drivesource.py", line 117, in save
for progress in self.drivebackend.create(bytes, file_metadata, MIME_TYPE):
File "/app/backup/driverequests.py", line 192, in create
partial = self.retryRequest("PUT", location, headers=headers, data=data, patch_url=False)
File "/app/backup/driverequests.py", line 245, in retryRequest
raise e
File "/app/backup/driverequests.py", line 234, in retryRequest
response = self._request_client.request(method, url, headers=send_headers, json=json, timeout=self.config.get(Setting.GOOGLE_DRIVE_TIMEOUT_SECONDS), data=data, stream=stream)
File "/usr/lib/python3.7/site-packages/requests/api.py", line 60, in request
return session.request(method=method, url=url, **kwargs)
File "/usr/lib/python3.7/site-packages/requests/sessions.py", line 533, in request
resp = self.send(prep, **send_kwargs)
File "/usr/lib/python3.7/site-packages/requests/sessions.py", line 646, in send
r = adapter.send(request, **kwargs)
File "/usr/lib/python3.7/site-packages/requests/adapters.py", line 498, in send
raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', BrokenPipeError(32, 'Broken pipe'))
An unexpected error occurred: ('Connection aborted.', BrokenPipeError(32, 'Broken pipe'))

Closing comment (2019-10-21T16:31:41Z): Duplicate of #115
Repository: sagemath/sage

Issue #32773: Another test failure with KlyachkoBundle_class.random_deformation
Created: 2021-10-26T09:43:16Z
Part of #32544:
Bug or incorrect test?
sage -t --long --random-seed=23747002002644886606785003174022326205 src/sage/schemes/toric/sheaf/klyachko.py
**********************************************************************
File "src/sage/schemes/toric/sheaf/klyachko.py", line 951, in sage.schemes.toric.sheaf.klyachko.KlyachkoBundle_class.random_deformation
Failed example:
    Vtilde.cohomology(dim=True, weight=(0,))
Expected:
    (1, 0)
Got:
    (0, 0)

CC:  @vbraun @orlitzky @collares @sheerluck
Component: algebraic geometry
Author: Markus Wageringel
Branch/Commit: u/gh-mwageringel/32773 @ 27c8891
Issue created by migration from https://trac.sagemath.org/ticket/32773

Duplicate issue #34354: pycodestyle cleanup in src/sage/graphs/graph_database.py
Created: 2022-08-13T13:19:57Z
Component: graph theory
Author: David Coudert
Branch/Commit: dc80c09
Reviewer: Sebastian Oehms
Issue created by migration from https://trac.sagemath.org/ticket/34354

Closing comment (2022-08-20T17:06:17Z): comment:4
The error is not related to this ticket. It has already been reported in #32773.
Thanks for the review.
Repository: sagemath/sage

Issue #13987: Combinatorial m-ary trees
Created: 2013-01-22T16:46:59Z
In the same manner as #8703 we want to implement trees with a fixed number of subtrees (equivalent of binary trees but with m subtrees). Especially to use them in the context of the m-Tamari lattices.
This ticket depends on #8703 as we use the implementation of OrderedTrees.
Related:

#11369: generate k-trees up to symmetry
#19479: Implement k-ary trees

CC:  @hivert @sagetrac-sage-combinat @tscrim @darijgr
Component: combinatorics
Keywords: trees
Author: Viviane Pons
Branch/Commit: public/new-13987 @ a2d92f4
Reviewer: Darij Grinberg
Issue created by migration from https://trac.sagemath.org/ticket/13987

Duplicate issue #19479: Implement k-ary trees
Created: 2015-10-26T09:53:45Z
Implementation of k-ary trees.
See rather #13987, which is closer to being ready.
CC:  @darijgr @tscrim @kevindilks @jm58660 @VivianePons @hivert
Component: combinatorics
Keywords: kary trees
Author: Adrien Boussicault, Bérénice Delcroix-Oger
Branch/Commit: public/19749 @ 2afbde3
Issue created by migration from https://trac.sagemath.org/ticket/19479

Closing comment (2021-10-13T17:49:31Z): comment:22
Four years later, I propose again to close this as duplicate of #13987.
But nobody is listening.
Repository: sagemath/sage

Issue #12018: sage-list-packages will fail if user can't write to SAGE_ROOT
Created: 2011-11-13T00:46:36Z
As the summary says.  The script sage-list-packages writes a temporary file to
file = "%s/tmp/list"%SAGE_ROOT

This should use a temporary file instead.

Apply attachment: trac12018-notempfile.patch to the scripts repo.
Component: scripts
Author: R. Andrew Ohana
Reviewer: John Palmieri
Merged: sage-5.0.beta10
Issue created by migration from https://trac.sagemath.org/ticket/12018

Duplicate issue #12578: sage-list-packages script needs write permissions to SAGE_ROOT/tmp
Created: 2012-02-23T21:19:33Z
Duplicate of #12018.
CC:  @williamstein @jdemeyer
Component: scripts
Reviewer: John Palmieri, R. Andrew Ohana
Issue created by migration from https://trac.sagemath.org/ticket/12578

Closing comment (2012-02-24T00:01:06Z): comment:5
Replying to @jhpalmieri:

I think this is a duplicate of #12018.

Yup, looks like it, although our solutions are a bit different (I remove the need for a temp file).
Repository: sagemath/sage

Issue #7325: Sage cannot solve inequalities
Created: 2009-10-27T21:47:53Z
There is no interface to solvers of inequalities available in Maxima.
CC:  @mwhansen
Component: algebra
Keywords: relation, symbolics, inequality, solve
Author: Robert Mařík
Reviewer: Karl-Dieter Crisman
Merged: sage-4.3.2.alpha1
Issue created by migration from https://trac.sagemath.org/ticket/7325

Duplicate issue #7155: Allow solving of inequalities
Created: 2009-10-08T14:06:10Z
From a Maxima FAQ:
(%i1) load(fourier_elim)$

(%i2) fourier_elim([abs(x - abs(5-x)) < 1],[x]);
(%o2)                          [2<x,x<3]

(%i3) fourier_elim([x + y < 1, x - y > 9],[x,y]);
(%o3)                     [y+9<x,x<1-y,y<-4]

(%i4) fourier_elim([max(-x,x) < 7 * x + 1],[x]);
(%o4)                           [-1/8<x]

From pre-release codebase:
 (%i79) to_poly_solve((x-1)*(x-6) < 0,x);
 (%o79) %union([1 < x,x < 6])

 (%i80) to_poly_solve(min(x,1) < max(-5,x),x);
 (%o80) %union([1 < x],[x < -5])

 (%i81) to_poly_solve(min(x,1) # max(x,4),x);
 (%o81) %union([1 < x,x < 4],[4 < x],[x = 1],[x < 1],[x = 4])

 (%i82)  to_poly_solve((x+1)/(x-1) < 4,x);
 (%o82) %union([5/3 < x],[x < 1])

So it should not be too hard to wrap this, checking input/output for < or > or something.   This is one of those basic things people want, but which we assume it's too hard to write from scratch (which it probably is!).
CC:  @jasongrout @jhpalmieri @burcin
Component: symbolics
Keywords: solve, inequality, Maxima
Issue created by migration from https://trac.sagemath.org/ticket/7155

Closing comment (2009-10-28T12:31:32Z): comment:2
Replying to @kcrisman:

This is now a duplicate of #7325, which already has a first patch, so I am closing this ticket.

kcrisman, please don't close tickets. That's the job of the release manager.  See this section of the Developer's Guide for conventions on closing tickets.
Repository: sagemath/sage

Issue #14853: RDF vertices of a graph are transformed into consecutive integers
Created: 2013-07-04T13:02:45Z
As reported in the comments of this ask answer:
sage: A=Set([RDF.random_element(min=0,max=10) for k in range(10)]) ; A
{6.42320967152, 1.77698693175, 2.95922392964, 9.50745089775, 4.60546838289, 3.67300191731, 5.21254750195, 5.90579400282, 7.55309974188, 0.442799267782}
sage: G = Graph()
sage: G.add_vertices(A)
sage: G.vertices()
[0, 1, 2, 3, 4, 5, 6, 7, 9]

CC:  @nathanncohen
Component: graph theory
Author: Robert Miller
Reviewer: Nathann Cohen
Merged: sage-5.12.beta3
Issue created by migration from https://trac.sagemath.org/ticket/14853

Duplicate issue #14852: RDF vertices of a graph are transformed into consecutive integers
Created: 2013-07-04T13:02:16Z
As reported in the comments of this ask answer:
sage: A=Set([RDF.random_element(min=0,max=10) for k in range(10)]) ; A
{6.42320967152, 1.77698693175, 2.95922392964, 9.50745089775, 4.60546838289, 3.67300191731, 5.21254750195, 5.90579400282, 7.55309974188, 0.442799267782}
sage: G = Graph()
sage: G.add_vertices(A)
sage: G.vertices()
[0, 1, 2, 3, 4, 5, 6, 7, 9]

Component: graph theory
Reviewer: Thierry Monteil
Issue created by migration from https://trac.sagemath.org/ticket/14852

Closing comment (2013-07-04T13:05:25Z): comment:1
Sorry, i had a browser problem, this is a duplicate of #14853. Please close this ticket.
Repository: sagemath/sage

Issue #17212: OSX zeromq testsuite
Created: 2014-10-24T10:47:32Z
Component: packages: standard
Keywords: yosemite
Author: Volker Braun
Branch/Commit: a79384b
Reviewer: John Palmieri
Issue created by migration from https://trac.sagemath.org/ticket/17212

Duplicate issue #17207: zeromq testsuite fails on OSX Yosemite with test_abstract_ipc.cpp, test_shutdown_stress.cpp
Created: 2014-10-23T18:19:46Z
PASS: test_issue_566
Assertion failed: (rc == 0), function main, file test_abstract_ipc.cpp, line 31.
/bin/sh: line 1: 65192 Abort trap: 6           ${dir}$tst
XFAIL: test_abstract_ipc
PASS: test_many_sockets
Assertion failed: (s2), function main, file test_shutdown_stress.cpp, line 64.
/bin/sh: line 1: 65239 Abort trap: 6           ${dir}$tst
FAIL: test_shutdown_stress
PASS: test_pair_ipc
PASS: test_reqrep_ipc
PASS: test_timeo
PASS: test_fork
============================================
2 of 43 tests failed
Please report to zeromq-dev@lists.zeromq.org
============================================

Component: packages: standard
Keywords: yosemite
Reviewer: Vincent Delecroix
Issue created by migration from https://trac.sagemath.org/ticket/17207

Closing comment (2014-10-28T14:25:18Z): comment:1
Duplicate of #17212
Repository: sagemath/sage

Issue #3640: optional spkg polymake is broken with Sage 3.0.3/3.0.4
Created: 2008-07-11T12:40:56Z
See http://math.univ-lyon1.fr/~tdumont/sageproblems/problems
The issue is that the spkg-install has hard coded spkg versions of cddlib and gmp.
Fixed spkg coming up.
Cheers,
Michael
CC:  @sagetrac-mhampton
Component: build
Issue created by migration from https://trac.sagemath.org/ticket/3640

Duplicate issue #4160: as of 2009-09-20 the polymake optional spkg fails to install
Created: 2008-09-20T18:38:53Z
server2@sage:~$ sage -i polynomial-2.2.p4
Installing polynomial-2.2.p4
Calling sage-spkg on polynomial-2.2.p4
You must set the SAGE_ROOT environment variable or
run this script from the SAGE_ROOT or 
SAGE_ROOT/local/bin/ directory.
polynomial-2.2.p4
Machine:
Linux sage 2.6.18-6-amd64 #1 SMP Sun Feb 10 17:50:19 UTC 2008 x86_64 GNU/Linux
Deleting directories from past builds of previous/current versions of polynomial-2.2.p4
/home/server2/sage/local/bin/sage-spkg: file polynomial-2.2.p4 does not exist
Attempting to download it.
http://www.sagemath.org//packages/optional/polynomial-2.2.p4.spkg --> polynomial-2.2.p4.spkg
[ ]
http://www.sagemath.org//packages/standard/polynomial-2.2.p4.spkg --> polynomial-2.2.p4.spkg
[ ]
http://www.sagemath.org//packages/experimental/polynomial-2.2.p4.spkg --> polynomial-2.2.p4.spkg
[ ]
http://www.sagemath.org//packages/archive/polynomial-2.2.p4.spkg --> polynomial-2.2.p4.spkg
[ ]
**********************************************************************
* Unable to download polynomial-2.2.p4
* Please see http://www.sagemath.org//packages for a list of valid
* packages or check the package name.
**********************************************************************
sage: Failed to download package polynomial-2.2.p4 from http://www.sagemath.org/


Component: distribution
Issue created by migration from https://trac.sagemath.org/ticket/4160

Closing comment (2008-09-20T20:30:12Z): comment:1
This is a dupe of #3640. I have a fixed spkg-install that fixes this once and for all, but have not uploaded the spkg yet.
Cheers,
Michael
Repository: sagemath/sage

Issue #8462: Numerical noise in /sage/sage/plot/colors.py on Solairs SPARC
Created: 2010-03-06T22:29:21Z
Running Solaris 10 on a SPARC, I get some numerical noise on this. Since these are RGB values.
**********************************************************************
File "/export/home/drkirkby/32/sage-4.3.4.alpha0/devel/sage/sage/plot/colors.py", line 660:
    sage: gold / pi + yellow * e
Expected:
    RGB color (0.51829585732141792, 0.49333037605210095, 0.0)
Got:
    RGB color (0.51829585732141814, 0.49333037605210117, 0.0)
**********************************************************************

The test makes use of 'e'. As has been shown on various other trac tickets (e.g. #8374, #8375), the value of 'e' returned by the SPARC processor is less accurate then the Intel/ADM chips.
Dave
CC:  @kcrisman @robertwb @sagetrac-wcauchois
Component: graphics
Author: David Kirkby
Reviewer: Mike Hansen
Merged: sage-4.3.4.alpha1
Issue created by migration from https://trac.sagemath.org/ticket/8462

Duplicate issue #8461: Numerical noise in /sage/sage/plot/colors.py
Created: 2010-03-06T22:23:54Z
Running Solaris 10 on a SPARC, I get some numerical noise on this. Since these are RGB values.
**********************************************************************
File "/export/home/drkirkby/32/sage-4.3.4.alpha0/devel/sage/sage/plot/colors.py", line 660:
    sage: gold / pi + yellow * e
Expected:
    RGB color (0.51829585732141792, 0.49333037605210095, 0.0)
Got:
    RGB color (0.51829585732141814, 0.49333037605210117, 0.0)
**********************************************************************

The test makes use of 'e'. As has been shown on various other trac tickets (e.g. #8374, #8375), the value of 'e' returned by the SPARC processor is less accurate then the Intel/ADM chips.
I'll attach a patch soon.
Dave
CC:  @kcrisman @robertwb @sagetrac-wcauchois
Component: graphics
Issue created by migration from https://trac.sagemath.org/ticket/8461

Closing comment (2010-03-06T23:03:08Z): comment:1
This can be closed as a duplicate of #8462. It's better to do it this way, rather than close the later ticket, as that has a patch and more information attached.
dave
Repository: sagemath/sage

Issue #10652: Add support for uploading static html doc page as a worksheet in the notebook
Created: 2011-01-18T13:15:49Z
This patch adds (experimental) support for uploading a static html doc page as a worksheet in the notebook. As a side effect, it:

allows for uploading a .txt file from a URL (was broken)
allows for uploading a zip file containing .txt and .html files

This little feature would give a very simple workflow for distributing tutorial worksheets during our Sage(-Combinat) workshops, saving a lot of hassle and time to both us and the participants (more detail upon request). It would be great if this feature could be in the sage stable release by early May for the next Sage-Combinat workshop in
Acadia.
I wrote the attached small patch as a proof of concept; however this
is the first time I am touching the notebook code and I am not
planning to invest in this direction in the short term. So I would be extremely glad if some notebook expert could take over this patch, clean it up (look for TODO/FIXME), and rebase it upon #10521 with whom it probably conflicts lightly (this should be a breeze).
Little issues:

The produced worksheet does not look as nice as a usual worksheet or the live documentation (in particular, there are some useless navigation links on top). That's probably a question of style file. Or maybe the navigation links should be stripped out.

Future extensions:

Add support for attachements, non text outputs, etc (they are currently lost during the upload)

Related tickets:

#4825: Uploading a pdf which contains an attached .sws will extract the .sws
#7441: notebook: make it possible to upload from the url of a published worksheet
#9875: Can't upload from a notebook link, only from a .sws file
#10521: notebook upload of zipped worksheets can't deal with multiple worksheets with the same name

Apply in the sagenb repository:


attachment: trac_10652-upload-static-documentation-as-worksheet-nt.patch


attachment: trac-10652-reviewer.patch


attachment: trac_10652-upload-static-documentation-as-worksheet-advertise-nt.patch
 		Nicolas



CC:  @jasongrout @hivert @seblabbe
Component: notebook
Keywords: days28, Sphinx, upload, static html documentation
Author: Nicolas M. Thiéry
Reviewer: Jason Grout
Merged: sage-4.7.alpha4
Issue created by migration from https://trac.sagemath.org/ticket/10652

Duplicate issue #10878: notebook can't upload a zip of worksheets from a URL
Created: 2011-03-05T15:51:36Z
When you try to upload this zip file using the URL box, there is an error.  When you download and then upload it to the notebook using the Browse box (from your local filesystem), it works fine:
http://wiki.sagemath.org/devel/LatexToWorksheet?action=AttachFile&do=get&target=fcla-sage-experimental.zip
CC:  @jasongrout @fchapoton
Component: notebook
Issue created by migration from https://trac.sagemath.org/ticket/10878

Closing comment (2011-03-07T15:14:36Z): comment:2
Also related to #10652 which needs review.
Repository: sagemath/sage

Issue #32773: Another test failure with KlyachkoBundle_class.random_deformation
Created: 2021-10-26T09:43:16Z
Part of #32544:
Bug or incorrect test?
sage -t --long --random-seed=23747002002644886606785003174022326205 src/sage/schemes/toric/sheaf/klyachko.py
**********************************************************************
File "src/sage/schemes/toric/sheaf/klyachko.py", line 951, in sage.schemes.toric.sheaf.klyachko.KlyachkoBundle_class.random_deformation
Failed example:
    Vtilde.cohomology(dim=True, weight=(0,))
Expected:
    (1, 0)
Got:
    (0, 0)

CC:  @vbraun @orlitzky @collares @sheerluck
Component: algebraic geometry
Author: Markus Wageringel
Branch/Commit: u/gh-mwageringel/32773 @ 27c8891
Issue created by migration from https://trac.sagemath.org/ticket/32773

Duplicate issue #12379: add parallel algorithm to Graph chromatic_number
Created: 2012-01-29T03:21:29Z
The following page in the documentation (and the sage docstring for this method)
https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph.html
states chromatic_number uses the less efficient DLX algorithm by default, as opposed to the MILP algorithm that is sometimes more efficient.
Here, we add the 'parallel' algorithm that executes all algorithms in parallel and returns the answer as soon as one of the algorithm terminates.

Related ticket: #12378
Component: graph theory
Keywords: chromatic_number
Author: Joal Heagney, David Coudert
Branch/Commit: public/graphs/12379_parallel @ e05de25
Issue created by migration from https://trac.sagemath.org/ticket/12379

Closing comment (2022-05-21T16:18:21Z): comment:13
The random doctest errors reported by the patchbot are independent from this ticket and tracked in #32773 and #33880.
Repository: samuelclay/NewsBlur

Issue #1195: iOS: Crashing on launch
Created: 2019-06-04T06:33:37Z
On the new iOS 13 beta that released today, NewsBlur crashes when you attempt to launch the app.

Duplicate issue #1207: ipados 13 beta 1/2 - app not working
Created: 2019-06-19T20:20:58Z
hi
do you plan to update the app so it will run under ios 13 b1/2?
thank you

Closing comment (2019-06-24T20:25:46Z): Duplicate of #1195
Repository: samuelclay/NewsBlur

Issue #824: Web: Show muted sites in All Sites
Created: 2015-11-19T19:38:14Z
https://getsatisfaction.com/newsblur/topics/improved-muted-sites?topic-reply-list%5Bsettings%5D%5Bfilter_by%5D=all&topic-reply-list%5Bsettings%5D%5Bpage%5D=1#reply_16330796

Duplicate issue #937: Web: Show muted sites in All Sites
Created: 2016-08-03T21:16:35Z
Android's getting it, so web and iOS should too.

Closing comment (2016-08-07T08:11:35Z): This duplicates #824.
Repository: samuelclay/NewsBlur

Issue #1035: Web: Add notes and highlighting to saved stories
Created: 2017-08-11T19:46:28Z
Notes should look and work like shared stories but with a different background and a note about how only you can see this. Would be built on shared stories but would've the third category after friends and public comments.
Highlighting is trickier. Multiple sections and it should interact with natural text selection. Also need an easy way to clear highlights. Also would be nice to list out highlights as its own saved story special feed.

Duplicate issue #722: Web: Saved story notes with highlighting
Created: 2015-08-05T00:39:47Z
As requested here: https://getsatisfaction.com/newsblur/topics/adding-notes-to-saved-stories
Be able to select paragraphs to highlight (hiding rest of saved story), and add notes to highlights.

Closing comment (2020-06-09T01:08:45Z): Dupe of #1035. I'm so close to launching this but I have a bug that's been around for 2 years and I can't figure it out.
Repository: samuelclay/NewsBlur

Issue #441: Android: Adjusting text size broken with target SDK level 19.
Created: 2013-11-24T22:10:49Z
Adjusting the text size is broken when targetSdkLevel=19. I assume this is due to the change to a Chromium based Web View. A screenshot is shown below:

Duplicate issue #433: Android: Incorrect Font Size Handling on 4.4
Created: 2013-11-15T21:58:02Z
https://getsatisfaction.com/newsblur/topics/tiny_text_on_nexus_7_with_kitkat

Closing comment (2013-12-01T20:53:49Z): Double checked that this is back to working on 4.4 with the latest patch.  There are still issues with font sizing when the browser is taken out of quirks mode, but that is being tracked in #441.
Repository: samuelclay/NewsBlur

Issue #1009: Web: Search input looses focus while typing
Created: 2017-04-18T22:54:21Z
I'm seeing intermittent failures in the search bar at the top of feed displays where it looks like it starts to do an incremental search while I'm typing a search term (the feed contents below updates) but also takes focus away from the input, so doesn't capture the rest of the term I'm trying to type (and the additional keys may trigger other keyboard shortcuts then, triggering undesired effects.
I'm not able to repro this consistently, but have seen it recently in current versions of both firefox and chrome on linux.

Duplicate issue #1276: Web: Search loses keyboard focus before query is entirely typed out
Created: 2020-01-14T03:09:02Z
I often find that the search feature will start the search before I've finished typing, making me accidentally press all sorts of keybound shortcuts.
An option to only start searching when I've hit the enter button, would fix this and make me want to use search more often.

Closing comment (2020-06-09T01:16:32Z): Dupe of #1009. Will fix soon!
Repository: samuelclay/NewsBlur

Issue #142: Android: Bad Back Button Behaviour After Logout/Login
Created: 2013-04-05T19:19:35Z
login as user A
log out from menu
confirm
login as user B
press "back" button (presumably to leave app)

Logout confirmation screen will appear incorrectly.

Duplicate issue #149: Android: loading feeds shows log out confirmation
Created: 2013-04-07T01:38:48Z
See https://twitter.com/afrakt/status/320703380504838145:
Another Droid app bug. Every time I open it asks if I want to log out, fails to load stories. Basically, still unusable.

Closing comment (2013-04-07T01:41:42Z): Wouldn't be surprised if this were related to #142.
Temporary work-around is for user to go to the system menu, kill the application, and clear the app's data.
Repository: samuelclay/NewsBlur

Issue #561: Android: View Recently-Read Stories
Created: 2014-08-04T23:15:04Z
The web UI now provides a sweet way to go back and find stories you just read.  Should be a snap to add to the android app.

Duplicate issue #674: Android: Show Read Stories
Created: 2015-03-16T22:08:52Z
Right above the Saved Stories feed item, add a Read Stories feed. It should never be hidden. It should do the same thing as any other river view, except every story is guaranteed to be read_status:1 and does not need offline. Perhaps copying a page from the Global Shared Stories rules.
http://www.newsblur.com/api#/reader/read_stories

Closing comment (2015-03-16T22:17:56Z): Duplicate of #561.
Repository: samuelclay/NewsBlur

Issue #480: Android: Reconcile unread counts with number of unread stories
Created: 2014-01-28T20:12:40Z
This is the root cause of several user visible bugs -
The app starts and gets a list of feeds (applies to folders, too, but we'll keep it simple for the sake of explanation).  A feed has N unread items at that point.  By the time the feed is opened for reading, it has N+K unreads, as K more stories were found by the server since feed sync.  The first few pages of stories for the feed are received, possibly including the K stories.
Now we have one of several possible problems:


K is small.  One or two new stories appeared at the head of the list.  Our unread count is a little low, so we claim to be out of unreads a bit too early, but they were all received in the first set of story paging, so they are all known.


K is large.  Enough new stories appeared that (N+K) is greater than the number of stories found in the first few pages.  We only know that N << (N+K) and have no idea what the total unread count is.


K is nonzero but at indicies >> N.  Older stories were discovered or marked unread via a different UI.  There are unreads outside the initial set of story pages, but we have no way of knowing.


K is negative.  Stories were read via a different UI between sync and loading the feed.  We may feel the need to search for unreads that don't exist, but have no way of knowing until exhausing all pages of stories.


Case 1 is by far the most common, and easy enough to fix with arithmetic, if it is assumed that case 3 is not also in effect.  Case 2 is also mostly fixable with arithmetic.  These fixes are hackish but quick.
Cases 3 and 4 would seem to require re-querying unread counts before opening a feed.  This, however, is indicated by the docs to be too expensive to call as often as necessary to update counts.
How do the other UIs handle this issue?  I know that I have seen related bugs in the web UI (searching down the story list for unreads that are never found), but they seem less common there than in the app.

Duplicate issue #509: Android: Never allow -1 unread counts
Created: 2014-04-03T16:23:18Z
Still showing up: https://twitter.com/kmrhb/status/451754847587819520

Closing comment (2014-04-03T21:07:53Z): Hmm, this was one of our primary ways of chasing down root causes related to #480 and the old not-getting-marked-read issues, but I suppose we can switch to a log statement and keep an eye out.
Repository: samuelclay/NewsBlur

Issue #1928: iOS: image issues
Created: 2025-01-22T13:10:59Z
Two issues here:

Images are missing from the story list
Images are way too big in the story detail

Both of these issues only show up when you first load the story list or the story detail. If you load them again, images show up and correctly sized.
This video shows both. I've seen this for months and should be easily reproducible.

  
    
    

    trim.094011E1-549A-4696-8315-52C773CD1F82.MOV

Duplicate issue #1908: macOS: Return to scroll position when story redraws
Created: 2024-11-06T20:03:46Z
I was reading a long story and the story detail view redrew itself. All of the images were huge and my scroll position was off. I then moved two stories back and then returned to my story, and the images were full width (of course) and my scroll position was returned.

Closing comment (2025-01-22T20:45:23Z): This is related to #1928.
Repository: satijalab/seurat

Issue #3202: Combine clusters
Created: 2020-06-29T13:43:25Z
Hello all,
I have a question for you. I have clusterized and done the analysis with Seurat. The results are great, so thank you for your excellent work.
However, I hope you can help me with a doubt that I have. I have 17 clusters named with each corresponding cell population's names, but I would like to combine 4 different subpopulations of monocytes in just one. The reason is that we are studying T cell subpopulations, so I do not what to distract the reader with monocytes.
I know that adjusting the resolution you can reduce or increase the cluster numbers, but can we combine clusters once the clustering is done?
Thank you again for your help and work.
Aitor

Duplicate issue #3277: How to combine clusters?
Created: 2020-07-17T09:36:52Z
I have done a metadata analysis, and I identified about 24 clusters called "0-23", After I identified the cell kind of clusters, I found there were several clusters with same cell type. I just want to know HOW to combined the same cell type into 1 cluster?

Closing comment (2020-07-17T16:23:50Z): Duplicate of #3202
Repository: satijalab/seurat

Issue #2977: Problem reading .h5ad file
Created: 2020-05-08T02:00:35Z
Dear All,
I am trying to read a .h5ad file using the function>
file.seurat <- ReadH5AD(file = "D:/.../file.h5ad")
I am getting the following error:
Pulling expression matrices and metadata
Error in self$read_low_level(file_space = self_space_id, mem_space = mem_space_id,  :
HDF5-API Errors:
error #000: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dio.c in H5Dread(): line 173: can't read data
class: HDF5
major: Dataset
minor: Read failed
error #001: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dio.c in H5D__read(): line 551: can't read data
    class: HDF5
    major: Dataset
    minor: Read failed

error #002: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dchunk.c in H5D__chunk_read(): line 1875: unable to read raw data chunk
    class: HDF5
    major: Low-level I/O
    minor: Read failed

error #003: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dchunk.c in H5D__chunk_lock(): line 2905: data pipeline read failed
    class: HDF5
    major: Data filters
    minor: Filter operation failed

error #004: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Z.c in H5Z_pipeline(): line 1347: required filter 'lzf' is not registered
    class: HDF5
    major: Data filters
    minor: Read failed

Can anyone help me figure this out ?
Best,
Moheb

Duplicate issue #3089: Failed to read h5ad file. 
Created: 2020-05-29T01:35:59Z
Dear developer,
I want to use ReadH5AD in Seurat to read in a h5ad file, but I fail in many times. I have tried in Windows, Linux and MAC, and failed always. The error info is the same as fellow.
srtSample<-ReadH5AD(chrInput)
Pulling expression matrices and metadata
Error in self$read_low_level(file_space = self_space_id, mem_space = mem_space_id,  :
HDF5-API Errors:
error #000: ../../src/hdf5-1.10.0-1/src/H5Dio.c in H5Dread(): line 170: can't read data
class: HDF5
major: Dataset
minor: Read failed
error #001: ../../src/hdf5-1.10.0-1/src/H5Dio.c in H5D__read(): line 543: can't read data
    class: HDF5
    major: Dataset
    minor: Read failed

error #002: ../../src/hdf5-1.10.0-1/src/H5Dchunk.c in H5D__chunk_read(): line 2046: unable to read raw data chunk
    class: HDF5
    major: Low-level I/O
    minor: Read failed

error #003: ../../src/hdf5-1.10.0-1/src/H5Dchunk.c in H5D__chunk_lock(): line 3401: data pipeline read failed
    class: HDF5
    major: Data filters
    minor: Filter operation failed

error #004: ../../src/hdf5-1.10.0-1/src/H5Z.c in H5Z_pipeline(): line 1351: required filter 'lzf' is not registered
    class: HDF5
    major: Data filters
    minor: Read failed

error #005: ../../src/hdf5-1.10.0-1/src/H5PL.c i

Would you like to give some suggestions for solusion?
Best Wishes,
Jiang

Closing comment (2020-05-29T20:20:58Z): Duplicate of #2977