pinecone/core-2020-05-10-deduplication huggingface dataset:
Cost-effectiveness of treatments for superficial venous refluxin patients with chronic venous ulceration.

Background Venous leg ulcers impair quality of life significantly, with substantial costs to health services. The aim of this study was to estimate the cost‐effectiveness of interventional procedures alongside compression therapy versus compression therapy alone for the treatment of chronic venous leg ulceration. Methods A Markov decision analytical model was developed. The main outcome measures were quality‐adjusted life‐years (QALYs) and lifetime costs per patient, from the perspective of the UK National Health Service at 2015 prices. Resource use included the initial procedures, compression therapy, primary care and outpatient consultations. The interventional procedures included superficial venous surgery, endothermal ablation and ultrasound‐guided foam sclerotherapy (UGFS). The study population was patients with a chronic venous ulcer who were eligible for either compression therapy or an interventional procedure. Data were obtained from systematic review and meta‐analysis of RCTs. Results Surgery gained 0·112 (95 per cent c.i. −0·011 to 0·213) QALYs compared with compression therapy alone, with a difference in lifetime costs of €−1330 (−3570 to 1262). Given the expected savings in community care, the procedure would pay for itself within 4 years. There was insufficient evidence regarding endothermal ablation and UGFS to draw conclusions. Discussion This modelling study found surgery to be more effective and less costly than compression therapy alone. Further RCT evidence is required for both endothermal ablation and UGFS
Modification of activated carbon using nitration followed by reduction for carbon dioxide capture

Activated carbon (AC) samples were modified using nitration followed by reduction to enhance their CO2 adsorption capacities. Besides characterization of the samples, investigation of CO2 capture performance was conducted by CO2 isothermal adsorption, temperature-programmed (TP) CO2 adsorption, cyclic CO2 adsorption–desorption, and dynamic CO2 adsorption tests. Almost all modified samples showed a rise in the amount of CO2 adsorbed when the comparison is made in unit surface area. On the other hand, some of the samples displayed a capacity superior to that of the parent material when compared in mass unit, especially at elevated temperatures. Despite ~65% decrease in the surface area, TP-CO2 adsorption of the best samples exhibited increases of ~10 and 70% in CO2 capture capacity at 30 and 100 �C, respectively
Towards the optimization of a parallel streaming engine for telco applications

Parallel and distributed computing is becoming essential to process in real time the increasingly massive volume of data collected by telecommunications companies. Existing computational paradigms such as MapReduce (and its popular open-source implementation Hadoop) provide a scalable, fault tolerant mechanism for large scale batch computations. However, many applications in the telco ecosystem require a real time, incremental streaming approach to process data in real time and enable proactive care. Storm is a scalable, fault tolerant framework for the analysis of real time streaming data. In this paper we provide a motivation for the use of real time streaming analytics in the telco ecosystem. We perform an experimental investigation into the performance of Storm, focusing in particular on the impact of parameter configuration. This investigation reveals that optimal parameter choice is highly non-trivial and we use this as motivation to create a parameter configuration engine. As first steps towards the creation of this engine we provide a deep analysis of the inner workings of Storm and provide a set of models describing data flow cost, central processing unit (CPU) cost, and system management cost. ©2014 Alcatel-Lucent
Metabolic interrelationships software application: Interactive learning tool for intermediary metabolism

We developed and implemented the software application titled Metabolic Interrelationships as a self-learning and -teaching tool for intermediary metabolism. It is used by undergraduate medical students in an integrated organ systems-based and disease-oriented core curriculum, which started in our medical faculty in 2001. The computer program provides an interactive environment in which students learn to integrate the major metabolic pathways as well as their hormonal control mechanisms as far as they depend on nutritional status. Students can explore the time- and tissue-dependent changes in mammalian intermediary metabolism during a feeding-fasting cycle. Starting from a whole-body view of interorgan nutrient fluxes, the student can make excursions to individual organs and, from there, to increasing levels of molecular detail and to explanatory animations. The application is well received by students and staff
Student understanding of pH: "I don't know what the log actually is, I only know where the button is on my calculator"

In foundation biochemistry and biological chemistry courses, a major problem area that has been identified is students’ lack of understanding of pH, acids, bases, and buffers and their inability to apply their knowledge in solving acid/base problems. The aim of this study was to explore students’ conceptions of pH and their ability to solve problems associated with the behavior of biological acids to understand the source of student difficulties. The responses given by most students are characteristic of an atomistic approach in which they pay no attention to the structure of the problem and concentrate only on juggling the elements together until they get a solution. Many students reported difficulty in understanding what the question was asking and were unable to interpret a simple graph showing the pH activity profile of an enzyme. The most startling finding was the lack of basic understanding of logarithms and the inability of all except one student to perform a simple calculation on logs without a calculator. This deficiency in high school mathematical skills severely hampered their understanding of pH. This study has highlighted a widespread deficiency in basic mathematical skills among first year undergraduates and a fragmented understanding of acids and bases. Implications for the way in which the concepts of pH and buffers are taught are discussed
Use of short podcasts to reinforce learning outcomes in biology

Podcast, a powerful Web 2.0 tool increasingly used in higher education, refers to an audio or a video file which can be automatically downloaded to one’s computer as it becomes available, then later transferred to a portable player for listening. The technology thereby enables the user to listen to and/ or to watch the content anywhere and anytime.
This paper describes an exploratory study conducted at University of Minho, Portugal, in a 2nd year graduation course, where podcasts were introduced and used as a tool to present learning outcomes and to give some study guidelines The research was conducted in order to evaluate students’ and teacher’s reactions to the integration of this resource in teaching/ learning as well as students´ interest in having podcasts in the future. In conclusion, students and the lecturer considered the introduction of podcasts a very positive experience and they would like to have access to podcasts in other pedagogical contexts.This work was supported by FCT project PTDC/CED/70751/2006
A research-inspired laboratory sequence investigating acquired drug resistance

Here, we present a six-session laboratory exercise designed to introduce students to standard biochemical techniques in the context of investigating a high impact research topic, acquired resistance to the cancer drug Gleevec. Students express a Gleevec-resistant mutant of the Abelson tyrosine kinase domain, the active domain of an oncogenic protein implicated in chronic myelogenous leukemia, and investigate the kinase activity of wild type and mutant enzyme in the presence of two cancer drugs. Techniques covered include protein expression, purification, and gel analysis, kinase activity assays, and protein structure viewing. The exercises provide students with a hands-on understanding of the impact of biochemistry on human health, and demonstrate their potential as the next generation of investigators.Howard Hughes Medical Institut
Undergraduates improve upon published crystal structure in class assignment

Recently, 57 undergraduate students at the University of Michigan were assigned the task of solving a crystal structure, given only the electron density map of a 1.3 Å crystal structure from the electron density server, and the position of the N‐terminal amino acid. To test their knowledge of amino acid chemistry, the students were not given the protein sequence. With minimal direction from the instructor on how the students should complete the assignment, the students fared remarkably well in this task, with over half the class able to reconstruct the original sequence with over 77% sequence identity, and with structures whose median ranked in the 91st percentile of all structures of comparable resolution in terms of structure quality. Fourteen percent of the students' structures produced Molprobity steric clash validation scores even better than that of the original structure, suggesting that multiple students achieved an improvement in the overall structure quality compared to the published structure. Students were able to delineate limiting case chemical environments, such as charged interactions or complete solvent exposure, but were less able to distinguish finer details of hydrogen bonding or hydrophobicity. Our results prompt several questions: why were students able to perform so well in their structural validation scores? How were some students able to outperform the 88% sequence identity mark that would constitute a perfect score, given the level of degenerate density or surface residues with poor density? And how can the methodology used by the best students inform the practices of professional X‐ray crystallographers? © 2014 by The International Union of Biochemistry and Molecular Biology, 42(5):398–404, 2014
Identification of the major chemical constituents and their metabolites in rat plasma and various organs after oral administration of effective Erxian Decoction (EXD) fraction by liquid chromatography-mass spectrometry

A simple and specific LC-DAD-ESI-MS/MS method has been developed and applied for the primary investigation of the chemical constituents absorbed or metabolized in vivo, after the rat oral administration of Erxian Decoction (EXD), a Chinese medicine prescription for menopausal syndromes. Through the online ESI-MS n analysis, a total of 35 compounds have been identified or tentatively characterized from the seven tested samples, and 13 of them were unambiguously identified through a direct comparison of the retention time, UV spectra and MS n fragmentation patterns with the authentic ones. The results showed that 21 compounds were detected from rat plasma, 20 compounds were detected from rat kidneys and adrenal glands, 19 compounds were detected from rat ovaries, 12 compounds were found in rat intestines, nine compounds were identified from rat livers and nine compounds were detected from rat brains at certain time points after oral administration of the eff ective EXD fraction. Copyright © 2009 John Wiley & Sons, Ltd.postprin
LC/MS/MS analysis of the endogenous dimethyltryptamine hallucinogens, their precursors, and major metabolites in rat pineal gland microdialysate

We report a qualitative liquid chromatography–tandem mass spectrometry (LC/MS/MS) method for the simultaneous analysis of the three known  N , N ‐dimethyltryptamine endogenous hallucinogens, their precursors and metabolites, as well as melatonin and its metabolic precursors. The method was characterized using artificial cerebrospinal fluid (aCSF) as the matrix and was subsequently applied to the analysis of rat brain pineal gland‐aCSF microdialysate. The method describes the simultaneous analysis of 23 chemically diverse compounds plus a deuterated internal standard by direct injection, requiring no dilution or extraction of the samples. The results demonstrate that this is a simple, sensitive, specific and direct approach to the qualitative analysis of these compounds in this matrix. The protocol also employs stringent MS confirmatory criteria for the detection and confirmation of the compounds examined, including exact mass measurements. The excellent limits of detection and broad scope make it a valuable research tool for examining the endogenous hallucinogen pathways in the central nervous system. We report here, for the first time, the presence of  N , N ‐dimethyltryptamine in pineal gland microdialysate obtained from the rat. Copyright © 2013 John Wiley & Sons, Ltd
Determination of different forms of aminothiols in red blood cells without washing erythrocytes

Detection and quantification of different aminothiols forms (reduced and total) in biological fluids are important for the investigation of oxidative stress-related diseases and cell homeostasis study. The aim of this study was to optimize a HPLC method in order to determine both reduced and total thiol forms in red blood cells (RBC) at low temperature without washing erythrocytes. Analytical recoveries for total and reduced thiols were 91.6-98.5 and 94.9-98.2% respectively. The relative standard deviations intra-assay for total and reduced thiols were 1.14-3.64 and 0.83-2.3% respectively and the relative standard deviations inter-assay for total and reduced thiols were 1.12-3.54 and 0.84-2.03%, respectively. This method allows specific analysis of the aminothiol state inside the RBC, as a model of intracellular metabolism functioning
Sensitive and validated LC-MS/MS methods to evaluate mycophenolic acid pharmacokinetics and pharmacodynamics in hematopoietic stem cell transplant patients.

Article first published online: 26 JAN 2015Monitoring of pharmacodynamics in addition to pharmacokinetics is one of strategies to individualize mycophenolate mofetil therapy. The purpose of this study was to develop sensitive liquid chromatography-tandem mass spectrometry (LC-MS/MS) methods for evaluation of the pharmacokinetics and pharmacodynamics of mycophenolic acid (MPA). Concentrations of mycophenolic acid glucuronide (MPAG), mycophenolic acid acyl-glucuronide, as well as unbound MPA and MPAG, were determined, and inosine-5'-monophosphate dehydrogenase activity was calculated by measuring concentrations of produced xanthosine-5'-monophosphate (XMP) and intracellular adenosine-5'-monophosphate after incubation of peripheral blood mononuclear cell (PBMC) lysates. A metal-free Mastro(TM) column and two gradient patterns were used to improve the quantification limit of XMP to 0.1 μM. In the clinical MPA concentration range, the linearity of the calibration curve, inter- and intra-day precision and accuracy satisfied the relevant US Food and Drug Administration guidelines. The MPA concentrations in hematopoietic stem cell transplant (HSCT) patients determined by the enzyme assay and the present LC-MS/MS method showed a good correlation (r(2) = 0.95, p < 0.001). In this study, we report sensitive and validated LC-MS/MS methods to evaluate the pharmacokinetics and pharmacodynamics of MPA, which are sufficiently sensitive to assess small quantities of PBMC lysates collected shortly after HSCT
Application of a LC-MS/MS method developed for the determination of p-phenylenediamine, N-acetyl-p-phenylenediamine and N,N-diacetyl-p-phenylenediamine in human urine specimens

Cases of poisoning by p-phenylenediamine (PPD) are detected sporadically. Recently
an article on the development and validation of a LC-MS/MS method for the
detection of PPD and its metabolites, N-acetyl-p-phenylenediamine (MAPPD) and
N,N-diacetyl-p-phenylenediamine (DAPPD) in blood was published. In the current
study this method for detection of these compounds was validated and applied to
urine samples. The analytes were extracted from urine samples with methylene
chloride and ammonium hydroxide as alkaline medium. Detection was performed by
LC-MS/MS using electrospray positive ionization under multiple reaction-monitoring
mode. Calibration curves were linear in the range 5–2000 ng/mL for all analytes.
Intra- and inter-assay imprecisions were within 1.58–9.52% and 5.43–9.45%
respectively, for PPD, MAPPD and DAPPD. Inter-assay accuracies were within -7.43
and 7.36 for all compounds. Lower limit of quantification was 5 ng/mL for all
analytes. The method, which complies with the validation criteria, was successfully
applied to the analysis of PPD, MAPPD and DAPPD in human urine samples
collected from clinical and postmortem cases.This work was made possible by an IFCC PSEP scholarship.http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1099-08012017-12-31Pharmacolog
Separation of different forms of proteose peptone 3 by hydrophobic interaction chromatography with a dual salt system

A panel of four hydrophobic adsorbents (butyl-, octyl-, phenyl- and epoxy-Sepharose) was used to examine the
selectivity and fractionation of several proteose peptone 3 (PP3) forms from a freeze-dried extract of whey bovine milk. In particular,
the effects of altering the ligand type and salt were investigated. The chromatographic studies suggest that PP3 strongly
interacts among the three commercial hydrophobic resins leading to a drop off in selectivity, while a complete binding was
achieved at low salt concentrations (below 0.5 M) and total elution only with phosphate buffer and/or water stepwise conditions.
Only in epoxy–Sepharose was an appreciably selectivity of the several fractions of PP3 present in the initial feedstock attained.
Despite the high salt concentration for a complete binding of PP3 (above 1.5 M ammonium sulfate) onto this support, the dual salt
system (ammonium sulfate 1 M and sodium citrate 0.8 M) led to a high separation degree of high and low molecular weight forms
of PP3
Determination of polynuclear aromatic compounds in composted municipal refuse and compost-amended soils by a simple clean-up procedure

3 pages, 1 figure, 2 tables, 21 references.A rapid and reproducible procedure suitable for the analysis of polycyclic aromatic compounds (PACs) in sludges and soil samples has been developed. The PACs are isolated by ultrasonic extraction with methyl chloride, redissolution of the crude extract in isooctane and clean-up of the PAC-containing fraction by chromatography on alumina micro-columns. After separation and quantitative determination of the various PACS by capillary gas chromatography/mass spectrometry, more than 50 PAC compounds which cover a wide range of concentrations were detected in the sludge samples. The most abundant compounds were mono-, di- and trimethyl derivatives of naphthalene, phenanthrene, fluorene, dibenzethiophene and naphthothiophene. No accumulation of PAC in an agricultural soil after an experiment of compost application over three years was observed.Peer Reviewe
Neural bases of enhanced attentional control: Lessons from action video game players.

OBJECTIVES: \ud
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The ability to resist distraction and focus on-task-relevant information while being responsive to changes in the environment is fundamental to goal-directed behavior. Such attentional control abilities are regulated by a constant interplay between previously characterized bottom-up and top-down attentional networks. Here we ask about the neural changes within these two attentional networks that may mediate enhanced attentional control.\ud
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MATERIALS AND METHODS: \ud
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To address this question, we contrasted action video game players (AVGPs) and nonvideo game players (NVGPs) in a Posner-cueing paradigm, building on studies documenting enhanced attentional control in AVGPs.\ud
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RESULTS: \ud
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Behavioral results indicated a trend for more efficient target processing in AVGPs, and better suppression in rare catch trials for which responses had to be withheld. During the cue period, AVGPs recruited the top-down network less than NVGPs, despite showing comparable validity effects, in line with a greater efficiency of that network in AVGPs. During target processing, as previously shown, recruitment of top-down areas correlated with greater processing difficulties, but only in NVGPs. AVGPs showed no such effect, but rather greater activation across the two networks. In particular, the right temporoparietal junction, middle frontal gyrus, and superior parietal cortex predicted better task performance in catch trials. A functional connectivity analysis revealed enhanced correlated activity in AVGPs compared to NVGPs between parietal and visual areas.\ud
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CONCLUSIONS: \ud
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These results point to dynamic functional reconfigurations of top-down and bottom-up attentional networks in AVGPs as attentional demands vary. Aspects of this functional reconfiguration that may act as key signatures of high attentional control are discussed
Early presymptomatic cholinergic dysfunction in a murine model of amyotrophic lateral sclerosis

Altres ajuts: Fundació La Marató de TV3 (110430/31/32), TERCEL and CIBERNED funds from the Fondo de Investigación Sanitaria of Spain.Sporadic and familiar amyotrophic lateral sclerosis (ALS) cases presented lower cholinergic activity than in healthy individuals in their still preserved spinal motoneurons (MNs) suggesting that cholinergic reduction might occur before MN death. To unravel how and when cholinergic function is compromised, we have analyzed the spatiotemporal expression of choline acetyltransferase (ChAT) from early presymptomatic stages of the SOD1 G93A ALS mouse model by confocal immunohistochemistry. The analysis showed an early reduction in ChAT content in soma and presynaptic boutons apposed onto MNs (to 76%) as well as in cholinergic interneurons in the lumbar spinal cord of the 30-day-old SOD1 G93A mice. Cholinergic synaptic stripping occurred simultaneously to the presence of abundant surrounding major histocompatibility complex II (MHC-II)-positive microglia and the accumulation of nuclear Tdp-43 and the appearance of mild oxidative stress within MNs. Besides, there was a loss of neuronal MHC-I expression, which is necessary for balanced synaptic stripping after axotomy. These events occurred before the selective raise of markers of denervation such as ATF3. By the same time, alterations in postsynaptic cholinergic-related structures were also revealed with a loss of the presence of sigma-1 receptor, a Ca2+ buffering chaperone in the postsynaptic cisternae. By 2 months of age, ChAT seemed to accumulate in the soma of MNs, and thus efferences toward Renshaw interneurons were drastically diminished. In conclusion, cholinergic dysfunction in the local circuitry of the spinal cord may be one of the earliest events in ALS etiopathogenesis