pinecone/core-2020-05-10-deduplication huggingface dataset:
Variation in particulate C : N : P stoichiometry across the Lake Erie watershed from tributaries to its outflow

This is an Open Access Article. It is published by Wiley under the Creative Commons Attribution-NonCommercial 4.0 Licence (CC BY-NC). Full details of this licence are available at: http://creativecommons.org/licenses/by-nc/4.0/© 2017 The Authors Limnology and Oceanography published by Wiley Periodicals, Inc. on behalf of Association for the Sciences of Limnology and Oceanography Human activities can cause large alterations in biogeochemical cycles of key nutrients such as carbon (C), nitrogen (N), and phosphorus (P). However, relatively little is known about how these changes alter the proportional fluxes of these elements across ecosystem boundaries from rivers to lakes. Here, we examined environmental factors influencing spatial and temporal variation in particulate C : N : P ratios across the Lake Erie watershed from its tributaries to its outflow. Throughout the study, particulate nutrient ratios ranged widely (C : N 2.0–25.8, C : P 32–530, N : P 3.7–122.9), but mean values were generally lower than previous estimates from different aquatic environments. Particulate C : N ratios varied the least across all environments, but C : P and N : P ratios increased between tributaries and coastal areas and throughout the growing season in coastal environments. These ratios also differed temporally in offshore waters as particulate C : P and N : P were higher in the spring and summer and lower in the fall and winter. Particulate C : P ratios also increased between the western/central and eastern basins indicating differential nutrient processing across the lake. These stoichiometric changes were associated with unique environmental factors among ecosystems as tributary stoichiometry was related to terrestrial land use and land cover, coastal ratios were a product of mixing between riverine and offshore waters, and offshore patterns were influenced by differences in temperature and particulate nutrient loading among basins. Overall, by studying changes in particulate C : N : P ratios across the Lake Erie watershed, our study demonstrates the power of using mass balance principles to study nutrient transformations along the aquatic continuum
Toward more accurate temperature reconstructions based on oxygen isotopes of subfossil chironomid head-capsules in Australia.

This study investigates the potential of applying stable oxygen isotopes (δ18O) from head capsules (HCs) of subfossil chironomids (subfamily Tanypodinae) to reconstruct past temperature changes from south-eastern Australia. The study reports δ18O results from Tanypodinae HCs in nine lakes. The relationship between δ18O values of Tanypodinae HCs in lakes and summer (February) air temperature is robust (r = 0.84) supporting its potential to be applied as a temperature proxy in the Australian region. The comparison of these results with the δ18O values measured on Chironomus spp. HCs from the same lakes reveals differences between the two groups. δ18O values of Tanypodinae HCs have a stronger correlation with the δ18O of lake water, δ18O of precipitation and air temperature as compared with Chironomus δ18O values. This suggests that Tanypodinae HCs are superior targets to Chironomus spp. for temperature reconstructions. Our data indicate that the δ18O of Tanypodinae HCs could perform as well as the assemblage based chironomid transfer function from the Australian mainland. We recommend analysis of HCs from additional lakes to develop a more robust calibration curve relating Tanypodinae HC δ18O to temperature
Resilience by diversity: Large intraspecific differences in climate change responses of an Arctic diatom

The potential for adaptation of phytoplankton to future climate is often extrapolated based on single\ud
strain responses of a representative species, ignoring variability within and between species. The aim of this\ud
study was to approximate the range of strain-specific reaction patterns within an Arctic diatom population,\ud
which selection can act upon. In a laboratory experiment, we first incubated natural communities from an\ud
Arctic fjord under present and future conditions. In a second step, single strains of the diatom Thalassiosira\ud
hyalina were isolated from these selection environments and exposed to a matrix of temperature (38C and\ud
68C) and pCO2 levels (180 latm, 370 latm, 1000 latm, 1400 latm) to establish reaction norms for growth,\ud
production rates, and elemental quotas. The results revealed interactive effects of temperature and pCO2 as\ud
well as wide tolerance ranges. Between strains, however, sensitivities and optima differed greatly. These\ud
strain-specific responses corresponded well with their respective selection environments of the previous community incubation. We therefore hypothesize that intraspecific variability and the selection between coexisting strains may pose an underestimated source of species’ plasticity. Thus, adaptation of phytoplankton\ud
assemblages may also occur by selection within rather than only between species, and species-wide inferences\ud
from single strain experiments should be treated with caution
Resilience in moving water: Effects of turbulence on the predatory impact of the lobate ctenophore Mnemiopsis leidyi

Despite its delicate morphology, the lobate ctenophore Mnemiopsis leidyi thrives in coastal ecosystems as an influential zooplankton predator. Coastal ecosystems are often characterized as energetic systems with high levels of natural turbulence in the water column. To understand how natural wind-driven turbulence affects the feeding ecology of M. leidyi, we used a combination of approaches to quantify how naturally and laboratory generated turbulence affects the behavior, feeding processes and feeding impact of M. leidyi. Experiments using laboratory generated turbulence demonstrated that turbulence can reduce M. leidyi feeding rates on copepods and Artemia nauplii by > 50%. However, detailed feeding data from the field, collected during highly variable surface conditions, showed that wind-driven turbulence did not affect the feeding rates or prey selection of M. leidyi. Additional laboratory experiments and field observations suggest that the feeding process of M. leidyi is resilient to wind-driven turbulence because M. leidyi shows a behavioral response to turbulence by moving deeper in the water column. Seeking refuge in deeper waters enables M. leidyi to maintain high feeding rates even under high turbulence conditions generated by wind driven mixing. As a result, M. leidyi exerted a consistently high predatory impact on prey populations during highly variable and often energetic wind-driven mixing conditions. This resilience adds to our understanding of how M. leidyi can thrive in a wide spectrum of environments around the world. The limits to this resilience also set boundaries to its range expansion into novel areas
Seasonal changes in the biochemical fate of carbon fixed by benthic diatoms in intertidal sediments

Benthic diatoms are important primary producers in intertidal marine sediments and form the basis of the food web in these ecosystems. In order to investigate the carbon flow within diatom mats, we performed in situ 13C pulse-chase labeling experiments and followed in detail the biochemical fate of carbon fixed by the diatoms for five consecutive days. These labeling experiments were done at approximately 2-monthly intervals during 1 yr in order to cover seasonal variations. The fixed carbon was recovered in individual carbohydrates including extracellular polymeric substances (EPS), amino acids, fatty acids, and nucleic acid bases. In addition, we assessed a variety of environmental parameters and photosynthetic characteristics. The fixed carbon was initially mainly stored as carbohydrate (glucose) while nitrogen-rich compounds (e.g., amino acids and RNA/DNA) were produced more slowly. During the year, the diatoms distributed the photosynthetically fixed carbon differently among the various carbon pools that were measured. In summer, the diatoms decreased carbon fixation and accumulated relatively more lipid as a storage compound (27% 6 2% vs. 12% 6 5% in other seasons). The percentage of fixed carbon that was excreted as EPS was lower in summer compared to other seasons, amounting 9% 6 4% and 21% 6 6%, respectively. Hence, it seemed that the physiology of the microphytobenthos was different during summer and caused by higher light intensity and a shift in nitrogen source
Denitrification, anaerobic ammonium oxidation, and dissimilatory nitrate reduction to ammonium in an East African Great Lake (Lake Kivu)

We investigated anaerobic nitrogen (N) cycling in the water column of Lake Kivu, a deep meromictic tropical lake in East Africa. Data were collected at one station in the Northern Basin and one in the Southern Basin, during two sampling campaigns (June 2011—dry season, and February 2012—rainy season). Short-term incubations of sulfide-free water with 15N-labeled substrates revealed high potential denitrification and dissimilatory nitrate reduction to ammonium (DNRA) rates (up to 350 and 36 nmol N produced L−1 h−1, respectively), while anaerobic ammonium oxidation (anammox) was lower (up to 3.3 nmol N produced L−1 h−1). However, anammox rates were 15 nmol N produced L−1 h−1 when 15 NH4+ was added at depths where NH4+ concentrations were very low (< 1 μmol L−1). With the addition of 5 μmol L−1 of 15 NO3− and 10 μmol L−1 of H2S, denitrification and anammox were stimulated in the Northern Basin, while the increase of DNRA rates was less notable. In the Southern Basin, the addition of H2S decreased denitrification rates, probably because of competition with DNRA, which increased, while no effect was observed on anammox. This study puts into evidence the co-occurrence of denitrification, anammox and DNRA, for the first time in a great tropical lake, and underlines the spatial heterogeneity of these processes. Contrary to numerous reports in literature, we show that anammox can significantly occur in presence of H2S, suggesting that the contribution of anammox in the N cycle may be underestimated.Peer reviewe
Effects of water level fluctuations on nitrogen dynamics in littoral macrophytes

Sustained water level drawdown followed by rewetting has the potential to shift macrophytes from a nutrient sink to a source, but the fate of macrophyte-derived nutrients after rewetting is not well understood. We investigated the fate of released nitrogen (N) from isotopically labeled macrophyte litter over a 4-week period after rewetting. We used three treatments: (1) different species in the litter (invasive Cabomba caroliniana vs. native Hydrilla verticillata); (2) sediment desiccation history (“dried then rewetted” vs. “constantly wet”); (3) living macrophytes (presence vs. absence). Our results showed that the Cabomba litter treatment had a significantly higher percentage of macrophyte-derived 15N in the dissolved fraction of the water column and assimilated by phytoplankton (higher chlorophyll a concentrations), compared to the Hydrilla litter. The treatments with sediment desiccation also had a significantly higher percentage of 15N in the dissolved fraction and used by phytoplankton after rewetting, but less in the sediment, compared to the constantly wet treatment. The presence of living macrophytes partially reduced the 15N increase in the water column and/or sediment, but the scale of the effect was species- and biomass-dependent. Our study showed that sediment pre-desiccation changed the fate of macrophyte-derived 15N after rewetting, increasing the impact on water quality. This was further exacerbated by the presence of litter from an invasive species. This study highlights the need to manage water levels to maintain healthy macrophyte beds and thereby addressing water quality issues in lakes and reservoirs.Griffith Sciences, Griffith School of EnvironmentFull Tex
Optical types of inland and coastal waters

Inland and coastal waterbodies are critical components of the global biosphere. Timely monitoring is necessary to enhance our understanding of their functions, the drivers impacting on these functions and to deliver more effective management. The ability to observe waterbodies from space has led to Earth observation (EO) becoming established as an important source of information on water quality and ecosystem condition. However, progress toward a globally valid EO approach is still largely hampered by inconsistences over temporally and spatially variable in‐water optical conditions. In this study, a comprehensive dataset from more than 250 aquatic systems, representing a wide range of conditions, was analyzed in order to develop a typology of optical water types (OWTs) for inland and coastal waters. We introduce a novel approach for clustering in situ hyperspectral water reflectance measurements (n = 4045) from multiple sources based on a functional data analysis. The resulting classification algorithm identified 13 spectrally distinct clusters of measurements in inland waters, and a further nine clusters from the marine environment. The distinction and characterization of OWTs was supported by the availability of a wide range of coincident data on biogeochemical and inherent optical properties from inland waters. Phylogenetic trees based on the shapes of cluster means were constructed to identify similarities among the derived clusters with respect to spectral diversity. This typification provides a valuable framework for a globally applicable EO scheme and the design of future EO missions
Recovery of Holothuroidea population density, community composition, and respiration activity after a deep-sea disturbance experiment

Mining polymetallic nodules on abyssal plains will have adverse impacts on deep‐sea ecosystems, but it is largely unknown whether the impacted ecosystem will recover, and if so at what rate. In 1989 the “DISturbance and reCOLonization” (DISCOL) experiment was conducted in the Peru Basin where the seafloor was disturbed with a plough harrow construction to explore the effect of small‐scale sediment disturbance from deep‐sea mining. Densities of Holothuroidea in the region were last investigated 7 yr post‐disturbance, before 19 yr later, the DISCOL site was re‐visited in 2015. An “ocean floor observatory system” was used to photograph the seabed across ploughed and unploughed seafloor and at reference sites. The images were analyzed to determine the Holothuroidea population density and community composition, which were combined with in situ respiration measurements of individual Holothuroidea to generate a respiration budget of the study area. For the first time since the experimental disturbance, similar Holothuroidea densities were observed at the DISCOL site and at reference sites. The Holothuroidea assemblage was dominated by Amperima sp., Mesothuria sp., and Benthodytes typica, together contributing 46% to the Holothuroidea population density. Biomass and respiration were similar among sites, with a Holothuroidea community respiration of 5.84 x-10-4 +/- 8.74 x 10-5 10−5 mmol C m−2 d−1 at reference sites. Although these results indicate recovery of Holothuroidea, extrapolations regarding recovery from deep‐sea mining activities must be made with caution: results presented here are based on a relatively small‐scale disturbance experiment as compared to industrial‐scale nodule mining, and also only represent one taxonomic class of the megafauna
Biogeography of zooplankton feeding strategy

The trait‐based approach is increasingly used in plankton ecology to understand diversity, community dynamics, and biogeography. While on the global scale phytoplankton traits are fairly well established, zooplankton traits are only beginning to be understood. One taxa‐transcending aspect of zooplankton diversity is the distinction between ambush and active feeding strategies. We present a global‐scale empirical estimate of feeding strategy derived from copepod abundance observations, which for the first time suggests a distinct trait biogeography with ambush feeding as the dominant feeding strategy at higher, but not at lower latitudes. To explain this trait biogeography, we develop a minimalist trade‐off based model of feeding strategies based on encounter rates between zooplankton predators and their phyto‐ and zooplankton prey. Encounter rates are governed by the two traits, size and motility, that trade off against predation risk. Coupled to a three‐dimensional dynamic green ocean model, our idealized encounter model captures the observed feeding strategy biogeography. In the model, this pattern arises from competing dominant food chains within the food web and is shaped by a trophic trait cascade of active vs. passive feeding in adjacent trophic levels. The dominant feeding strategy structures the pathways and efficiency of energy and biomass transfer through the model food web, with consequences for primary production, export and higher trophic levels. Understanding feeding strategies is therefore important for fisheries, biogeochemical cycling, and long‐term predictions of ecosystem dynamics and functioning by global dynamic green ocean models
The enlargement of the Suez Canal and introduction of non-indigenous species to the Mediterranean Sea

The Suez Canal is one of the most important waterways in the world – during the last year 17,148 ships passed through the Canal – reducing emissions, saving time, and operating costs to shippers. The rapid increase in ship size from the “Post-Suezmax” (> 12,000 TEU) to the latest container vessels (> 19,000 TEU) now requires enlargements of port facilities and canals. 
A project of this magnitude, and with potentially negative environmental outcomes, requires a transparent and scientifically sound “Environmental Impact Assessment” (EIA). An explicit obligation on Parties to the Convention on Biological Diversity (https://www.cbd.int/doc/ legal/cbd-en.pdf) was made to consider transboundary impacts on biodiversity, particularly those associated with invasive non-indigenous species
20 years of the Atlantic Meridional Transect - AMT

The AMT (www.amt-uk.org) is a multidisciplinary programme which undertakes biological, chemical, and physical oceanographic research during an annual voyage between the UK and a destination in the South Atlantic such as the Falkland Islands, South Africa, or Chile. This transect of >12,000 km crosses a range of ecosystems from subpolar to tropical, from euphotic shelf seas and upwelling systems, to oligotrophic mid-ocean gyres. The year 2015 has seen two milestones in the history of the AMT: the achievement of 20 years of this unique ocean going programme and the departure of the 25th cruise on the 15th of September. Both of these events were celebrated in June this year with an open science conference hosted by the Plymouth Marine Laboratory (PML) and will be further documented in a special issue of Progress in Oceanography which is planned for publication in 2016. Since 1995, the 25 research cruises have involved 242 sea-going scientists from 66 institutes representing 22 countries. AMT was designed from the outset to be a collaborative programme. It was originally conceived by Jim Aiken, Patrick Holligan, Roger Harris, and Dave Robins with Chuck McClain and Chuck Trees at NASA to test and ground truth satellite algorithms of ocean color. The opportunities offered by this initiative meant that this series of repeated biannual cruises rapidly developed into a coordinated study of ocean biodiversity, biogeochemistry, and ocean/atmosphere interactions
The 2nd International Indian Ocean Expedition (IIOE-2): Motivating New Exploration in a Poorly Understood Basin.

Overview\ud
The Indian Ocean remains one of the most poorly sampled and overlooked regions of the world ocean. Today, more than 25% of the world’s population lives in the Indian Ocean region and the population of most Indian Ocean rim nations is increasing rapidly. These increases in population are giving rise to mul- tiple stressors in both coastal and open ocean environments. Combined with warming and acidification due to global climate change, these regional stressors are resulting in loss of biodi- versity in the Indian Ocean and also changes in the phenology and biogeography of many spe- cies. These pressures have given rise to an urgent need to understand and predict changes in the Indian Ocean, but the measurements that are needed to do this are still lacking. In response, SCOR, IOC, and IOGOOS have stimulated a second International Indian Ocean Expedition (IIOE-2). An international Science Plan and an Implementation Strategy for IIOE-2 have been developed, the formulation of national plans is well underway in several countries, and new research initiatives are being motivated.\ud
An Early-Career Scientist Network for Indian Ocean Research has self-organized to support the Expedition. The success of IIOE-2 will be gauged not just by how much it advances our understanding of the complex and dynamic Indian Ocean system, but also by how it con- tributes to sustainable development of marine resources, environmental stewardship, ocean and climate forecasting, and training of the next generation of ocean scientists. We encourage ASLO members to get involved
A novel marine bioinvasion vector: Ichthyochory, live passage through fish

Many species of Indo-Pacific holobenthic foraminifera have been introduced and successfully established sustainable populations in the Mediterranean Sea over the past few decades. However, known natural and anthropogenic vectors do not explain how these species were introduced long distances from their origin. We present evidence for a novel marine bioinvasion vector explaining this long-distance transport and introduction using both contemporary field and historical analyses. In 2015–2016, we found living specimens of 29 foraminiferal species in the fecal pellets of two Red Sea herbivorous rabbitfish—Siganus rivulatus and Siganus luridus in the Mediterranean. In our historical analysis, we found 34 foraminiferal species in preserved Red Sea rabbitfish specimens, dating between 1967 and 1975. In addition, we found congruent propagation patterns of the non-indigenous rabbitfish and foraminifera, lagging 4–11 yrs between discoveries, respectively. Predation of marine benthos by non-indigenous fish, followed by incomplete digestion and defecation of viable individuals, comprise the main introduction vector of these organisms into novel environments
Can small zooplankton mix lakes?

The idea that living organisms may contribute to turbulence and mixing in lakes and oceans (biomixing) dates to the 1960s, but has attracted increasing attention in recent years. Recent modeling and experimental studies suggest that marine organisms can enhance turbulence as much as winds and tides in oceans, with an impact on mixing. However, other studies show opposite and contradictory results, precluding definitive conclusions regarding the potential importance of biomixing. For lakes, only models and lab studies are available. These generally indicate that small zooplankton or passive bodies generate turbulence but different levels of mixing depending on their abundance. Nevertheless, biogenic mixing is a complex problem, which needs to be explored in the field, to overcome limitations arising from numerical models and lab studies, and without altering the behavior of the animals under study