pinecone/core-2020-05-10-deduplication huggingface dataset:
Automated face detection for occurrence and occupancy estimation in chimpanzees

First and foremost thank you to the Max Planck Society Innovation Fund, the Krekeler Foundation, and the Robert Bosch Foundation for making this research possible. The face detection software was developed as part of the SAISBECO project, a collaboration funded by the Pact for Research and Innovation between the Max Planck Society and the Fraunhofer Society.Surveying endangered species is necessary to evaluate conservation effectiveness. Camera trapping and biometric computer vision are recent technological advances. They have impacted on the methods applicable to field surveys and these methods have gained significant momentum over the last decade. Yet, most researchers inspect footage manually and few studies have used automated semantic processing of video trap data from the field. The particular aim of this study is to evaluate methods that incorporate automated face detection technology as an aid to estimate site use of two chimpanzee communities based on camera trapping. As a comparative baseline we employ traditional manual inspection of footage. Our analysis focuses specifically on the basic parameter of occurrence where we assess the performance and practical value of chimpanzee face detection software. We found that the semi-automated data processing required only 2–4% of the time compared to the purely manual analysis. This is a non-negligible increase in efficiency that is critical when assessing the feasibility of camera trap occupancy surveys. Our evaluations suggest that our methodology estimates the proportion of sites used relatively reliably. Chimpanzees are mostly detected when they are present and when videos are filmed in high-resolution: the highest recall rate was 77%, for a false alarm rate of 2.8% for videos containing only chimpanzee frontal face views. Certainly, our study is only a first step for transferring face detection software from the lab into field application. Our results are promising and indicate that the current limitation of detecting chimpanzees in camera trap footage due to lack of suitable face views can be easily overcome on the level of field data collection, that is, by the combined placement of multiple high-resolution cameras facing reverse directions. This will enable to routinely conduct chimpanzee occupancy surveys based on camera trapping and semi-automated processing of footage.PostprintPeer reviewe
Conservation strategies for understanding and combating the primate bushmeat trade on Bioko Island, Equatorial Guinea

Bioko Island, Equatorial Guinea is among the important places in Africa for the conservation of primates, but a cultural preference for bushmeat and a lack of effective law enforcement has encouraged commercial bushmeat hunting, threatening the survival of the remaining primate population. For over 13 years, we collected bushmeat market data in the Malabo market, recording over 35,000 primate carcasses, documenting “mardi gras” consumption patterns, seasonal carcass availability, and negative effects resulting from government intervention. We also conducted forest surveys throughout Bioko’s two protected areas in order to localize and quantify primate populations and hunting pressure. Using these data, we were able to document the significant negative impact bushmeat hunting had on monkey populations, estimate which species are most vulnerable to hunting, and develop ecological niche models to approximate the distribution of each of Bioko’s diurnal primate species. These results also have allowed for the identification of primate hotspots, such as the critically important southwest region of the Gran Caldera Scientific Reserve, and thus, priority areas for conservation on Bioko, leading to more comprehensive conservation recommendations. Current and future efforts now focus on bridging the gap between investigators and legislators in order to develop and effectively implement a management plan for Bioko’s Gran Caldera Scientific Reserve and to develop a targeted educational campaign to reduce demand by changing consumer attitudes toward bushmeat. Using this multidisciplinary approach, informed by biological, socioeconomic, and cultural research, there may yet be a positive future for the primates of Bioko
Resilience of experimentally-seeded dietary traditions in wild vervets : evidence from group fissions

This work was supported by the Swiss National Science Foundation (Sinergia grant CRSI33_133040 to A.W. and C. S., P300P3_151187 and 31003A_159587 to E.W.); the Society in Science - Branco Weiss Fellowship to E.W.; and the John Templeton Foundation (ID 40128 to A.W.).Controlled laboratory experiments have delivered extensive and compelling evidence for the diffusion and maintenance of socially learned behavior in primates and other animals. Such evidence is rarer in the wild, but we show that a behavior seeded in a majority of individuals within vervet monkey (Chlorocebus pygerythus) groups may be sustained across several years. Here we report results of two natural fission events in such groups that offer novel evidence of the resilience of socially-transmitted group norms of behavior. Before fission, high ranked females exhibited an almost exclusive adherence to a group preference among two food options, originally introduced through a distasteful additive in one option, but no longer present in repeated later tests. Because of rank-dependent competition, low-ranked females ate more of the formerly distasteful food and so discovered it was now as palatable as the alternative. Despite this experience, low ranked females who formed the splinter groups then expressed a 100% bias for the preferred option of their original parent group, revealing these preferences to be resilient. We interpret this effect as conformity to either the preferences of high rankers or of a majority in the parent group, or both. However, given fissioned individuals’ familiarity with their habitat and experimental options, we question the adequacy of the informational function usually ascribed to conformity and discuss alternatives under a concept of "social conformity".PostprintPeer reviewe
Correlates of androgens in wild male Barbary macaques : testing the challenge hypothesis.

Investigating causes and consequences of variation in hormonal expression is a key focus in behavioral ecology. Many studies have explored patterns of secretion of the androgen testosterone in male vertebrates, using the challenge hypothesis (Wingfield, Hegner, Dufty, & Ball, 1990; The American Naturalist, 136(6), 829–846) as a theoretical framework. Rather than the classic association of testosterone with male sexual behavior, this hypothesis predicts that high levels of testosterone are associated with male–male reproductive competition but also inhibit paternal care. The hypothesis was originally developed for birds, and subsequently tested in other vertebrate taxa, including primates. Such studies have explored the link between testosterone and reproductive aggression as well as other measures of mating competition, or between testosterone and aspects of male behavior related to the presence of infants. Very few studies have simultaneously investigated the links between testosterone and male aggression, other aspects of mating competition and infant‐related behavior. We tested predictions derived from the challenge hypothesis in wild male Barbary macaques (Macaca sylvanus), a species with marked breeding seasonality and high levels of male‐infant affiliation, providing a powerful test of this theoretical framework. Over 11 months, 251 hr of behavioral observations and 296 fecal samples were collected from seven adult males in the Middle Atlas Mountains, Morocco. Fecal androgen levels rose before the onset of the mating season, during a period of rank instability, and were positively related to group mating activity across the mating season. Androgen levels were unrelated to rates of male–male aggression in any period, but higher ranked males had higher levels in both the mating season and in the period of rank instability. Lower androgen levels were associated with increased rates of male‐infant grooming during the mating and unstable periods. Our results generally support the challenge hypothesis and highlight the importance of considering individual species’ behavioral ecology when testing this framework
Are adult physiques geometrically similar? The dangers of allometric scaling using body mass power laws.

Human physique classification by somatotype assumes that adult humans are geometric similar to each other. However, this assumption has yet to be adequately tested in athletic and nonexercising human populations. In this study, we assessed this assumption by comparing the mass exponents associated with girth measurements taken at 13 different sites throughout the body in 478 subjects (279 athletic subjects, and 199 nonexercising controls). Corrected girths which account for subcutaneous adipose tissue at the upper arm, thigh, and calf sites, and which simulate muscle circumference, were also calculated. If subjects are geometrically similar to each other, girth exponents should be approximately proportional to M(1/3), where M is the subjects' body mass. This study confirms that human adult physiques are not geometrically similar to each other. In both athletic subjects and nonexercising controls, body circumferences/limb girths develop at a greater rate than that anticipated by geometric similarity in fleshy sites containing both muscle and fat (upper arms and legs), and less than anticipated in bony sites (head, wrists, and ankles). Interestingly, head girths appear to remain almost constant, irrespective of subjects' body size/mass. The results also suggest that thigh muscle girths of athletes and controls increase at a greater rate than that predicted by geometric similarity, proportional to body mass (M(0.439) and M(0.377), respectively). These systematic deviations from geometric similarity have serious implications for the allometric scaling of variables such as energy expenditure, oxygen uptake, anaerobic power, and thermodynamic or anthropometric studies involving individuals of differing size
Molecular and classical cytogenetic analyses demonstrate an apomorphic reciprocal chromosomal translocation in Gorilla gorilla

The existence of an apomorphic reciprocal chromosomal translocation in the gorilla lineage has been asserted or denied by various cytogeneticists. We employed a new molecular cytogenetic strategy (chromosomal in situ suppression hybridization) combined with high-resolution banding, replication sequence analysis, and fluorochrome staining to demonstrate that a reciprocal translocation between ancestral chromosomes homologous to human chromosome 5 and 17 has indeed occurred. © 1992 Wiley-Liss, Inc.
Continuity or colonization in Anglo-Saxon England? Isotope evidence for mobility, subsistence practice, and status at West Heslerton.

The adventus Saxonum is a crucial event in English protohistory. Scholars from a range of disciplines dispute the scale and demographic profile of the purported colonizing population. The 5th-7th century burial ground at West Heslerton, North Yorkshire, is one of the few Anglian cemeteries where an associated settlement site has been identified and subjected to extensive multidisciplinary postexcavation study. Skeletal and grave good evidence has been used to indicate the presence of Scandinavian settlers. A small, preliminary study using lead and strontium isotope analysis of tooth enamel, mineralized in early childhood, from Neolithic/Early Bronze Age (n = 8), Iron Age (n = 2), and Early Anglo-Saxon (n = 32) skeletons, was carried out to directly investigate this hypothesis. Results suggest that lead provides dissimilar types of information in different time periods. In post-Roman England, it appears to reflect the level of exposure to circulated anthropogenic rather than natural geological lead, thus being a cultural rather than geographical marker. Consequently, only strontium provides mobility evidence among the Anglian population, whereas both isotope systems do so in pre-Roman periods. Strontium data imply the presence of two groups: one of local and one of nonlocal origin, but more work is required to define the limits of local variation and identify immigrants with confidence. Correlations with traditional archaeological evidence are inconclusive. While the majority of juveniles and prehistoric individuals fall within the local group, both groups contain juveniles, and adults of both sexes. There is thus no clear support for the exclusively male, military-elite invasion model at this site
Brief Communication: Intertooth and Intrafacet Dental Microwear Variation in an Archaeological Sample of Modern Humans From the Jordan Valley

Dental microwear was recorded in a Bronze-Iron Age (3570–3000 BP) sample of modern humans recovered from Tell es-Sa'idiyeh in the Jordan Valley. Microwear patterns were compared between mandibular molars, and between the upper and lower part of facet 9. The comparison revealed a greater frequency of pits and shorter scratches on the second and third molars, compared to the first. Pit frequency also increased on the lower part of the facet on the first molar, compared to the upper part. These results support previous calls for standardization when selecting a molar type for a diet-microwear study. Otherwise the microwear variations along the tooth row could mask any diet-microwear correlations. The results also suggest that there may be a need to choose a consistent location on a facet in order to enhance comparability among studies
Relationship between adiposity and body size reveals limitations of BMI.

The aims of this study were to assess 1) whether the stature-adjusted body mass index (BMI) is a valid proxy for adiposity across both athletic and nonathletic populations, and 2) whether skinfold measurements increase in proportion to body size, thus obeying the principle of geometric similarity. The research design was cross-sectional, allowing the relationship between skinfold calliper readings (at eight sites and between specific athletic and nonathletic groups, n = 478) and body size (either mass, stature, or both) to be explored both collectively, using proportional allometric MANCOVA, and individually (for each site) with follow-up ANCOVAs. Skinfolds increase at a much greater rate relative to body mass than that assumed by geometric similarity, but taller subjects had less rather than more adiposity, calling into question the use of the traditional skinfold-stature adjustment, 170.18/stature. The best body-size index reflective of skinfold measurements was a stature-adjusted body mass index similar to the BMI. However, sporting differences in skinfold thickness persisted, having controlled for differences in body size (approximate BMI) and age, with male strength- and speed-trained athletes having significantly lower skinfolds (32% and 23%, respectively) compared with controls. Similarly, female strength athletes had 29% lower skinfold measurements compared to controls, having controlled for body size and age. These results cast serious doubts on the validity of BMI to represent adiposity accurately and its ability to differentiate between populations. These findings suggest a more valid (less biased) assessment of fatness will be obtained using surface anthropometry such as skinfolds taken by experienced practitioners following established procedures
Dental Microwear From Natufian Hunter-Gatherers and Early Neolithic Farmers: Comparisons Within and Between Samples

Microwear patterns from Natufian hunter-gatherers (12,500–10,250 bp) and early Neolithic (10,250–7,500 bp) farmers from northern Israel are correlated with location on facet nine and related to an archaeologically suggested change in food preparation. Casts of permanent second mandibular molars are examined with a scanning electron microscope at a magnification of 500×. Digitized micrographs are taken from the upper and lower part of facet nine. Microwear patterns are recorded with an image-analysis computer program and compared within and between samples, using univariate and multivariate analyses. Comparisons within samples reveal a greater frequency of pits on the lower part of the facet among the farmers, compared to the upper part. Microwear does not vary over the facet among the hunter-gatherers. Comparisons between samples reveal larger dental pits (length and width) and wider scratches among the farmers at the bottom of the facet, compared to the hunter-gatherers. Microwear does not vary between samples at the top of the facet. The microwear patterns suggest that the Natufian to early Neolithic development led to a harder diet, and this is related to an archaeologically suggested change in food processing. The harder diet of the early farmers may have required higher bite forces that were exerted at the bottom of facet nine, in the basin of the tooth
Y-chromosomal variation in the Czech Republic

To analyze the contribution of the Czech population to the Y-chromosome diversity landscape of Europe and to reconstruct past demographic events, we typed 257 males from five locations for 21 UEPs. Moreover, 141 carriers of the three most common haplogroups were typed for 10 microsatellites and coalescent analyses applied. Sixteen Hg's characterized by derived alleles were identified, the most common being R1a-SRY10831 and P-DYS257*(xR1a). The pool of haplogroups within I-M170 represented the third most common clade. Overall, the degree of population structure was low. The ages for Hg I-M170, P-DYS257*(xR1a), and R1a-SRY10831 appeared to be comparable and compatible with their presence during or soon after the LGM. A signal of population growth beginning in the first millennium B.C. was detected. Its similarity among the three most common Hg's indicated that growth was characteristic for a gene pool that already contained all of them. The Czech population appears to be influenced, to a very moderate extent, by genetic inputs from outside Europe in the post-Neolithic and historical times. Population growth postdated the archaeologically documented introduction of Neolithic technology and the estimated central value coincides with a period of repeated changes driven by the development of metal technologies and the associated social and trade organization
Diet and Reproductive Function in Wild Female Chimpanzees (Pan Troglodytes Schweinfurthii)at Kibale National Park, Uganda

Human female reproductive function is highly sensitive to current energetic condition, indicating adaptation to modulate reproductive effort in accordance with changing ecological conditions that might favor or disfavor the production of offspring. Here, we test the
hypothesis that reproductive capacity in female chimpanzees is likewise limited by current energetic condition.  We used 12 years of data on wild chimpanzees (Pan troglodytes schweinfurthii) in the Kanyawara community of Kibale National Park, Uganda, to examine the relationship of dietary quality, as assessed by fruit components of the diet, to the occurrence of sexually receptive females, concentrations of ovarian steroid hormones, and timing of conception. We found that the frequency of females having sexual swellings was positively related to the consumption of drupe fruits. Estrogen levels of both cycling and noncycling females increased during seasonal peaks in the consumption of drupe fruits. When average fruit consumption remained high across months, females conceived more quickly. These results support the hypothesis that cycling and conception in chimpanzees are contingent upon high energy balance, and they indicate that the availability of fruit is a key variable limiting reproductive performance in chimpanzees.  Chimpanzees appear to share with humans a reproductive system that is primed to respond to proximate levels of energy acquisition.Anthropolog
Variability of height, weight and body mass index in a Swiss Armed Forces 2005 census

The influence of the environment and genetics on individual biological characteristics such as body mass and stature is well known. Many studies of these relationships have been based on conscript data. These studies often suffer from the fact that their data cover only a part of the population. Characterized by prosperity, democratic stability and enormous micro-regional cultural diversity, Switzerland is in the unique situation of offering data covering more than 80% of annual male birth cohorts.\ud
The aim of this study is to assess the impact of socio-economic success, cultural differences, month of birth and altitude (among other factors) on individual anthropometric characteristics of conscripts (N~28,000) in the 2005 census. Our result highlights in such a large male sample the relationship between economic environment, regional cultural diversity, climate and other factors such as individual month of birth on stature and weight. Socioeconomic status, culture (as reflected by mother tongue) and month of birth were found to have significant effects on height and weight, while altitude did not show such effects. In general, weight is more affected by all these variables than height. Taking weight-dependent mortality and morbidity into account, it is of foremost\ud
public interest to know more about paired effects of living conditions on stature and weight in a highly developed society
Broken ribs: paleopathological analysis of costal fractures in the human identified skeletal collection from the Museu Bocage, Lisbon, Portugal (late 19th to middle 20th centuries)

Although rarely reported in the anthropological literature, rib fractures are commonly found during the analysis of human skeletal remains of past and modern populations. This lack of published data precludes comparison between studies and restricts an accurate understanding either of the mechanisms involved in thoracic injuries or their impact on past societies. The present study aimed: 1) to report rib fracture prevalence in 197 individuals, 109 males, and 88 females, with ages at death ranging from 13 to 88 years old, from the Human Identified Skeletal Collection, Museu Bocage, Portugal (late 19th-middle 20th centuries); 2) to test the hypothesis that a higher prevalence of rib stress fractures existed in the 133 individuals who died from respiratory diseases, in a period before antibiotics. The macroscopic analysis revealed 23.9% (n = 47) of individuals with broken ribs. 2.6% (n = 124) out of 4,726 ribs observed were affected. Males presented more rib fractures, and a significantly higher prevalence was noted for older individuals. Fractures were more frequently unilateral (n = 34), left sided (n = 19) and mainly located on the shaft of ribs from the middle thoracic wall. Nineteen individuals presented adjacent fractured ribs. Individuals who died from pulmonary diseases were not preferentially affected. However, a higher mean rate of fractures was found in those who died from pneumonia, a scenario still common nowadays. Since rib involvement in chest wall injury and its related outcomes are important issues both for paleopathology and forensic anthropology, further investigations are warranted.Fundação para a Ciência e Tecnologia; Grant
number: SFRH/BD/16155/2004