pinecone/core-2020-05-10-deduplication huggingface dataset:
Evolution and cellular function of monothiol glutaredoxins: involvement in iron-sulphur cluster assembly

A number of bacterial species, mostly proteobacteria, possess monothiol glutaredoxins homologous to the Saccharomyces cerevisiae mitochondrial protein Grx5, which is involved in iron–sulphur cluster synthesis. Phylogenetic profiling is used to predict that bacterial monothiol glutaredoxins also participate in the iron–sulphur cluster (ISC) assembly machinery, because their phylogenetic profiles are similar to the profiles of the bacterial homologues of yeast ISC proteins. High evolutionary cooccurrence is observed between the Grx5 homologues and the homologues of the Yah1 ferredoxin, the scaffold proteins Isa1 and Isa2, the frataxin protein Yfh1 and the Nfu1 protein. This suggests that a specific functional interaction exists between these ISC machinery proteins. Physical interaction analyses using low-definition protein docking predict the formation of strong and specific complexes between Grx5 and several components of the yeast ISC machinery. Two-hybrid analysis has confirmed the in vivo interaction between Grx5 and Isa1. Sequence comparison techniques and cladistics indicate that the other two monothiol glutaredoxins of S. cerevisiae, Grx3 and Grx4, have evolved from the fusion of a thioredoxin gene with a monothiol glutaredoxin gene early in the eukaryotic lineage, leading to differential functional specialization. While bacteria do not contain these chimaeric glutaredoxins, in many eukaryotic species Grx5 and Grx3/4-type monothiol glutaredoxins coexist in the cell
A 4 Mb high resolution BAC contig on bovine chromosome 1q12 and comparative analysis with human chromosome 21q22

The bovine RPCI-42 BAC library was screened to construct a sequence-ready ~4 Mb single contig of 92 BAC clones on BTA 1q12. The contig covers the region between the genes KRTAP8P1 and CLIC6. This genomic segment in cattle is of special interest as it contains the dominant gene responsible for the hornless or polled phenotype in cattle. The construction of the BAC contig was initiated by screening the bovine BAC library with heterologous cDNA probes derived from 12 human genes of the syntenic region on HSA 21q22. Contig building was facilitated by BAC end sequencing and chromosome walking. During the construction of the contig, 165 BAC end sequences and 109 single-copy STS markers were generated. For comparative mapping of 25 HSA 21q22 genes, genomic PCR primers were designed from bovine EST sequences and the gene-associated STSs mapped on the contig. Furthermore, bovine BAC end sequence comparisons against the human genome sequence revealed significant matches to HSA 21q22 and allowed the in silico mapping of two new genes in cattle. In total, 31 orthologues of human genes located on HSA 21q22 were directly mapped within the bovine BAC contig, of which 16 genes have been cloned and mapped for the first time in cattle. In contrast to the existing comparative bovine-human RH maps of this region, these results provide a better alignment and reveal a completely conserved gene order in this 4 Mb segment between cattle, human and mouse. The mapping of known polled linked BTA 1q12 microsatellite markers allowed the integration of the physical contig map with existing linkage maps of this region and also determined the exact order of these markers for the first time. Our physical map and transcript map may be useful for positional cloning of the putative polled gene in cattle
A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae

This is an open access article distributed under the Creative Commons Attribution License.-- et al.Using a hierarchical approach, 620 non-essential single-gene yeast deletants generated by EUROFAN I were systematically screened for cell-wall-related phenotypes. By analyzing for altered sensitivity to the presence of Calcofluor white or SDS in the growth medium, altered sensitivity to sonication, or abnormal morphology, 145 (23%) mutants showing at least one cell wall-related phenotype were selected. These were screened further to identify genes potentially involved in either the biosynthesis, remodeling or coupling of cell wall macromolecules or genes involved in the overall regulation of cell wall construction and to eliminate those genes with a more general, pleiotropic effect. Ninety percent of the mutants selected from the primary tests showed additional cell wall-related phenotypes. When extrapolated to the entire yeast genome, these data indicate that over 1200 genes may directly or indirectly affect cell wall formation and its regulation. Twenty-one mutants with altered levels of β1,3-glucan synthase activity and five Calcofluor white-resistant mutants with altered levels of chitin synthase activities were found, indicating that the corresponding genes affect β1,3-glucan or chitin synthesis. By selecting for increased levels of specific cell wall components in the growth medium, we identified 13 genes that are possibly implicated in different steps of cell wall assembly. Furthermore, 14 mutants showed a constitutive activation of the cell wall integrity pathway, suggesting that they participate in the modulation of the pathway either directly acting as signaling components or by triggering the Slt2-dependent compensatory mechanism. In conclusion, our screening approach represents a comprehensive functional analysis on a genomic scale of gene products involved in various aspects of fungal cell wall formation.The work described in this article was part of the EUROFAN II program funded by the European Union and co-financed by grants BIO99-1384-CE and BIOg8-1516-CE from Comisión Interministerial de Ciencia y Tecnología (CICYT, Spain).Peer Reviewe
The current status of hypnosis in Spain

While Spanish academic researchers have actively attempted to disengage hypnosis from its traditional links with altered states and automatism, and to promote it by linking hypnotic phenomena with other everyday psychological processes, in the legal field there seems to have been little activity. Among jurists, opinion is divided regarding the exact influence of hypnosis on conscious will, although some maintain that hypnosis can override will, and most that being in a state of hypnosis at the time of committing a criminal act can be used as a defence, depending on knowledge of the prior personality of the individual and the kind of suggestions given. Consequently, because of its alleged influence on will, hypnosis is forbidden by law in Spain as an investigative procedure. Likewise, the practice of hypnosis has been removed from Spanish public health system services, and it cannot be subsidized by private insurance companies. We conclude that traditional notions of hypnosis may be holding back its practical acceptance in Spain. Copyright © 2000 British Society of Experimental and Clinical Hypnosi
An Investigation of the Factor Structure of the HARVARD GROUP SCALE OF HYPNOTIC SUSCEPTIBILITY, Form A (HGSHS:A)

In order to investigate the effects of the hypnotic state a standardized hypnosis session
was conducted with 144 subjects in a controlled laboratory study. The induction of a
hypnotic trance in the German version of the Harvard Group Scale of Hypnotic Susceptibility
(HGSHS:A by Shor and Orne, 1962) was tape-recorded and used as the
treatment.
The HGSHS:A seems to be a reliable measure of suggestibility and hypnotizability. This
is underlined by the consistent results of a factor analysis on the depths of hypnosis that
is in agreement with former studies. Descriptive data analyses with a sufficient number
of subjects of high and low suggestibility suggest that our hypnosis induction by tape is
an effective method of producing a hypnotic trance. Analyses of within-subjects variables
did not reveal any valid predictors of hypnotizability, thereby confirming the need of
screening instruments such as the HGSHS.
Fragmentation of carbohydrate anomeric alkoxy radicals: a new synthesis of chiral 1-halo-1-iodo alditols

10 pages, 3 tables, 2 schemes.-- PMID: 14673851 [PubMed].-- Supporting information (52-page PDF file) available at: http://www.wiley-vch.de/contents/jc_2111/2003/f5294_s.pdfTreatment of 1,2-fluorohydrins, 1,2-chlorohydrins, 1,2-bromohydrins, and 1,2-iodohydrins of the D-gluco, D-galacto, D-lacto, L-rhamno, D-allo, L-arabino, 3-deoxy-D-gluco, and 3,4-dideoxy-D-gluco families of carbohydrates with the (diacetoxyiodo)benzene/iodine system afforded 1-fluoro-1-iodo, 1-chloro-1-iodo, 1-bromo-1-iodo, and 1,1-diiodo alditols, respectively, in excellent yields. The reaction was achieved by radical fragmentation of the C1bond;C2 bond, triggered by the initially formed anomeric alkoxy radical, and subsequent trapping of the C2-radical by iodine atoms. This methodology is compatible with the stability of the protective groups most frequently used in carbohydrate chemistry. The potential utility of these 1-halo-1-iodo alditols as chiral synthons was evaluated by their transformation into alk-1-enyl iodides and in the Takai E-olefination reaction.This work was supported by the Investigation Programs nos. PPQ2000-0728, BQU2000-0650, and BQU2001-1665 of the Dirección General de\ud
Investigación Científica y Técnica, Spain. C.R.-F. thanks the Dirección General de Universidades e Investigación del Gobierno de Canarias for\ud
a fellowship
A general method for the synthesis of nanostructured large-surface-area materials through the self-assembly of functionalized nanoparticles

A general synthetic method for the preparation of nanostructured materials with large surface area was developed by using nanoparticle building blocks. The preparation route involves the self-assembly of functionalized nanoparticles in a liquid-crystal phase. These nanoparticles are functionalized by using difunctional amino acid species to provide suitable interactions with the template. Optimum interactions for self-assembly of the nanoparticles in the liquid-crystal phase were achieved with one -NH2 group anchored to the nanoparticle surface per 25 Å2. To maximize the surface area of these materials, the wall thicknesses are adjusted so that they are composed of a monolayer of nanoparticles. To form such materials, numerous parameters have to be controlled such as the relative volume fraction of the nanoparticles and the template and size matching between the hydrophilic component of the copolymer and nanoparticles. The surface functionalization renders our synthetic route independent of the nanoparticles and allows us to prepare a variety of nanostructured composite materials that consist of a juxtaposition of different discrete oxide nanoparticles. Examples of such materials include CeO2, ZrO2, and CeO2–Al(OH)3 composites
Car-Parrinello molecular dynamics study of the initial dinitrogen reduction step in Sellmann-type nitrogenase model complexes

We have studied reduction reactions for nitrogen fixation at Sellmann-type model complexes with Car-Parrinello simulation techniques. These dinuclear complexes are especially designed to emulate the so-called open-side FeMoco model. The main result of this work shows that in order to obtain the reduced species several side reactions have to be suppressed. These involve partial dissociation of the chelate ligands and hydrogen atom transfer to the metal center. Working at low temperature turns out to be one necessary pre-requisite in carrying out successful events. The successful events cannot be described by simple reaction coordinates. Complicated processes are involved during the initiation of the reaction. Our theoretical study emphasizes two experimental strategies which are likely to inhibit the side reactions. Clamping of the two metal fragments by a chelating phosphane ligand should prevent dissociation of the complex. Furthermore, introduction of tert-butyl substituents could improve the solubility and should thus allow usage of a wider range of (mild) acids, reductants, and reaction conditions
Synthesis, characterization, and pharmacokinetic evaluation of a potential MRI contrast agent containing two paramagnetic centers with albumin binding affinity

A dinuclear gadolinium(III) complex of an amphiphilic chelating ligand, containing two diethylenetriamine-N,N,N',N'',N''-pentaacetate (DTPA) moieties bridged by a bisindole derivative with three methoxy groups, has been synthesized and evaluated as a potential magnetic resonance imaging (MRI) contrast agent. Nuclear magnetic relaxation dispersion (NMRD) measurements indicate that at 20 MHz and 37 degrees C the dinuclear gadolinium(III) complex has a much higher relaxivity than [Gd(DTPA)] (6.8 vs 3.9 s(-1) mmol(-1)). The higher relaxivity of the dinuclear gadolinium(III) complex can be related to its reduced motion and larger rotational correlation time relative to [Gd(DTPA)]. In the presence of human serum albumin (HSA) the relaxivity value of the noncovalently bound dinuclear complex increases to 15.2 s(-1) per mmol of Gd3+, due to its relatively strong interaction with this protein. The fitted value of the binding constant to HSA (Ka) was found to be 10(4) M(-1). Because of its interaction with HSA, the dinuclear complex exhibits a longer elimination half-life from the plasma, and a better confinement to the vascular space compared to the commercially available [Gd(DTPA)] contrast agent. Transmetalation of the dinuclear gadolinium(III) complex by zinc(II) has been investigated. Biodistribution studies suggest that the complex is excreted by the renal pathway, and possibly by the hepatobiliary route. In vivo studies indicated that half of the normal dose of the gadolinium(III) complex enhanced the contrast in hepatic tissues around 40 % more effectively than [Gd(DTPA)]. The dinuclear gadolinium(III) complex was tested as a potential necrosis avid contrast agent (NACA), but despite the binding to HSA, it did not exhibit necrosis avidity, implying that binding to albumin is not a key parameter for necrosis-targeting properties.status: publishe
Effects of dipolar interactions on linear and nonlinear optical properties of multichromophore assemblies: A case study

Claudine Katan ‘s present address : CNRS UMR6082 FOTON, INSA de Rennes, 20 avenue des Buttes de Coësmes, CS 70839, 35708 RENNES cedex 7, FranceInternational audienceInterchromophore interactions in flexible multidipolar structures for nonlinear optics were addressed by a combined experimental and theoretical study on two series of one-, two-, and three-chromophore systems in which identical push-pull chromophores are assembled through covalent and flexible linkers in close proximity. The photophysical and nonlinear optical properties (quadratic hyperpolarizability) of the multichromophore systems were investigated and compared to those of the monomeric chromophores. Multimers have larger dipole moments than their monomeric analogues, that is, the dipolar subchromophores self-orientate within the multimeric structures. This effect was found to depend on the intersubchromophore distance in a nontrivial manner, which confirms that molecular engineering of such flexible systems is more complex than in completely geometrically controlled systems. Electric-field-induced second-harmonic generation (EFISHG) measurements in solution revealed increased figures of merit as compared to the monomeric analogue. This effect increases with increasing number and polarity of the individual subchromophores in the nanoassembly and increasing spacing between dipolar subchromophores. Experimental results are interpreted by a theoretical model for interacting polar and polarizable chromophores. The properties of multidipolar assemblies are shown to be related to the relative orientation of chromophores, which is imposed by interchromophore interactions. The supramolecular structure is thus a result of self-organization. The proposed theoretical model was also used to predict the properties of multichromophore structures made up of more polar and polarizable push-pull chromophores, and showed that stronger interchromophore interactions can heavily affect the individual optical responses. This suggests new routes for engineering highly NLO responsive multichromophore systems
To be dinuclear or not: Z-DNA induction by nickel complexes

The left-handed Z-DNA has been identified as a gene regulating element. Therefore the generation of Z-DNA through metal complexes might be an innovative way for the regulation of gene expression. Use of the new dinuclear complex N,N,N',N'-tetrakis-2(3,5-dimethylpyrazol-1-yl)ethyl]-1,3- propylenediamine-bis(nickel(II) dinitrate) (2) reversibly induced Z-DNA formation. However, when a 1:1 ratio of metal/dinucleating ligand was used as a control, the midpoint of the B- to Z-DNA transition was at the same nickel concentration as in case of the dinuclear complex. The novel mononuclear analogue, N-methyl-N,N-bis-2(3,5-dimethylpyrazol-1-yl)ethyl]amine- nickel (II)-dinitrate (3) was inducing the Z-DNA at a similar ratio versus nucleotides as free nickel(II) itself. For the first time, proton and nickel binding constants for the bis-2-(pyrazol-1-yl)ethyl]amine ligand system are reported and discussed. Both nickel complexes 2 and 3 were structurally characterized by single crystal analysis. Furthermore, the synthesis of the two new ligands, N,N,N',N'-tetrakis-2-(3,5-dimethylpyrazol -1-yl)ethyl]-1,2-propylenediamine (4) and N-methyl-N,N-bis-2(3,5-dimethylpyrazol-1-yl)ethyl]amine (5) is described. The two major synthetic pathways leading to polypyrazoyl amines in general are critically discussed with respect to yield, reproducibility and handling of the intermediates
Neural networks as a tool to classify compounds according to aromaticity criteria

11 pages, 8 figures, 3 tables.-- PMID: 17323387 [PubMed].-- Supporting information available: Correlations for all compounds, Correlations for compounds classified as aromatic by the Kohonen network, Factor Analysis for all compounds (N = 107), Factor Analysis for compounds classified as aromatic by the Kohonen network (N = 72), T-Test between NICS-NICS(1) for all compounds, T-Test between NICS-NICS(1) for compounds classified as aromatic by the\ud
Kohonen network, 9 pages. Available at: http://www.wiley-vch.de/contents/jc_2111/2007/f601101_s.pdfAromaticity is a fundamental concept in chemistry, with many theoretical and practical implications. Although most organic compounds can be categorized as aromatic, non-aromatic, or antiaromatic, it is often difficult to classify borderline compounds as well as to quantify this property. Many aromaticity criteria have been proposed, although none of them gives an entirely satisfactory solution. The inability to fully arrange organic compounds according to a single criterion arises from the fact that aromaticity is a multidimensional phenomenon. Neural networks are computational techniques that allow one to treat a large amount of data, thereby reducing the dimensionality of the input set to a bidimensional output. We present the successful applications of Kohonen's self-organizing maps to classify organic compounds according to aromaticity criteria, showing a good correlation between the aromaticity of a compound and its placement in a particular neuron. Although the input data for the training of the network were different aromaticity criteria (stabilization energy, diamagnetic susceptibility, NICS, NICS(1), and HOMA) for five-membered heterocycles, the method can be extended to other organic compounds. Some useful features of this method are: 1) it is very fast, requiring less than one minute of computational time to place a new compound in the map; 2) the placement of the different compounds in the map is conveniently visualized; 3) the position of a compound in the map depends on its aromatic character, thus allowing us to establish a quantitative scale of aromaticity, based on Euclidean distances between neurons, 4) it has predictive power. Overall, the results reported herein constitute a significant contribution to the longstanding debate on the quantitative treatment of aromaticity.This work was financially supported by MEyC (CTQ2004-01978). M.A. thanks MEyC for a\ud
fellowship. We also thank the Centro de Supercomputación de Galicia (CESGA) for computational time at the COMPAQ HPC 320 supercomputer.Peer reviewe
Synthesis of DNA-Sequence-Selective Hairpin Polyamide Platinum Complexes

Two DNA-sequence-selective hairpin polyamide platinum(II) complexes, containing pyrrole and imidazole heterocyclic rings, have been synthesised by different methods. A six-ring complex, selective for (A/T)GGG(A/T) DNA sequences, was made by using solid-phase synthesis, whilst an eight-ring complex, selective for (A/T)CCTG(A/T) DNA sequences, was made by utilising standard wet chemistry. Solid-phase synthesis resulted in a significantly higher yield, required less purification and is more efficient than the wet synthesis; as such, it is the preferred method for further work. The metal complexes were characterised by 1H and 195Pt NMR spectroscopy and ESI mass spectrometry. The two compounds provide a foundation for the synthesis of more complex molecules containing multiple hairpins and/or platinum groups.PublishedN/
Investigations on the Coupling of Ethylene and Alkynes in Tp Me2 Ir Compounds: Water as an Effective Trapping Agent

14 páginas, 2 figuras, 9 tablas, esquemasThe reaction of the bis(ethylene) complex [TpMe2Ir(C2H4)2] (1) (TpMe: hydrotris(3,5-dimethylpyrazolyl)borate) with two equivalents of dimethyl acetylenedicarboxylate (DMAD) in CH2Cl2 at 25 °C gives the hydride–alkenyl species [TpMe2IrH{C(R)=C(R)C(R)=C(R)CH=CH2}] (2, R: CO2Me) in high yield. A careful study of this system has established the active role of a number of intermediates en route to producing 2. The first of these is the iridium(I) complex [TpMe2Ir(C2H4)(DMAD)] (4) formed by substitution of one of the ethylene ligands in 1 by a molecule of DMAD. Complex 4 reacts further with another equivalent of the alkyne to give the unsaturated metallacyclopentadiene [TpMe2Ir{C(R)=C(R)C(R)=C(R)}], which can be trapped by added water to give adduct 7, or can react with the C2H4 present in solution generating complex 2. This last step has been shown to proceed by insertion of ethylene into one of the Ir-C bonds of the metallacyclopentadiene and subsequent β-H elimination. Complex 1 reacts sequentially with one equivalent of DMAD and one equivalent of methyl propiolate (MP) in the presence of water, with regioselective formation of the nonsymmetric iridacyclopentadiene [TpMe2Ir{C(R)=C(R)C(H)=C(R)}(H2O)] (9). Complex 9 reacts with ethylene giving a hydride–alkenyl complex 10, related to 2, in which the C2H4 has inserted regiospecifically into the Ir-C(R) bond that bears the CH functionality. Heating solutions of either 2 or 10 in CH2Cl2 allows the formation of the allyl species 3 or 11, respectively, by simple stereoselective migration of the hydride ligand to the Cα alkenyl carbon atom and concomitant bond reorganization of the resulting organic chain. All the compounds described herein have been characterized by microanalysis, IR and NMR spectroscopy, and for the case of 3, 7, 7⋅CO, 8⋅NCMe, 9, 9⋅NCMe, and 10, also by single-crystal X-ray diffraction studies.Financial support from the Spanish Ministry of Science (Projects CTQ2004–00409, FEDER support, and HU2003–039) and the Junta de Andalucía is gratefully acknowledged. N.R. thanks the MEC for a research grant.Peer reviewe