pinecone/core-2020-05-10-deduplication huggingface dataset:
Proton magnetization transfer effect in rat liver lactate

Off-resonance lactate magnetization transfer (MT experiments were performed on the in situ rat liver under perfused and ischemic conditions. A significant MT effect for lactate methyl protons was observed. The effect was larger for the ischemic condition than for the perfused condition, and was largest in the blood-filled ischemic livers. The size of the motionally restricted lactate pool, determined using a two-pool model fit, was estimated to be about 1% in perfused livers and about 1.8-2.5% after more than 1 hr of onset of ischemia, suggesting that lactate in liver is almost fully NMR-visible. The MT data for both the perfused and the ischemic condition appeared to be better approximated when assuming a superLorentzian lineshape for the immobile pool rather than a Gaussian lineshape. Finally, the experiments demonstrated a coupling between the lactate methyl and water protons, which may be mediated by macromolecules. (C) 2002 Wiley-Liss, Inc.status: publishe
Methods for interventional magnetic resonance imaging

This thesis has as its central aim to demonstrate, develop, discuss and promote new methods and technology for improving interventional low field magnetic resonance imaging. The work addresses problems related to accurate localization of minimally invasive surgical tools by describing novel devices and improvements to prior art techniques, such as optical tracking. In addition to instrument guidance, ablative treatment of liver tumours is discussed in connection with low field temperature measurement and the work describes suitable sequences for qualitative temperature imaging.

For instrument localization, a method utilising ex vivo Overhauser enhancement of a catheter like structure was demonstrated. An enhancement factor of 10 was achieved, proving that a substantial signal gain is possible through the use of ex vivo-enhanced liquid. Similarly, a method for biopsy needle tip tracking was developed; where the position of the tip was tracked with a signal from a miniaturized electron spin resonance sample and gradient pulses. At an update rate of 10 samples per second, the accuracy was measured to be better than ±2 mm within a homogeneous sphere of 300 mm.

Optical tracking methods concentrated on new indications of use for the developed optical tracking system and associated software: The system was applied to guide the needle 35 times into first sacral root foramina, with a success rate of 97%. It was also used in five bone biopsies, all of which were performed successfully, the samples allowed for a pathologic diagnosis, and the percutaneous procedures could be performed in less than 40 minutes. A new patient tracker device was developed for staged neurosurgical procedures and demonstrated with two patient cases.

In the temperature measurement study, spin echo, gradient echo and completely balanced steady-state free precession sequences were optimized for maximal temperature sensitivity and the optimized sequences compared. The steady-state sequence seemed the most promising for the prediction of ablated volume in liver.reviewe
Correlation between choline level and Gd-DTPA enhancement in patients with brain metastases of mammary carcinoma

Single voxel 1HH double spin-echo MR spectroscopy was used to examine 15 cases of brain metastasis of mammary carcinoma (18 lesions) in relation to Gd-DTPA enhanced MR imaging. For lesions larger than 50% of MRS voxel size, there was significant correlation between Gd-DTPA-enhanced MRI signal and MRS-detected signal of choline (Cho) containing compounds (r = 0.86, P < 0.01; n = 8). The observed loss of correlation when including the smaller lesions was overcome by correcting for partial volume effects (r = 0.69, P < 0.002; n = 18). Metastasis spectra showed increased Cho compared with control spectra, except for those lesions showing detectable lactate (Lact) signal. The detection of Lact in four of the larger lesions coincided with comparatively low levels of creatine (Cr) and Cho and heterogeneous Gd-DTPA enhancement (ring-enhancement). It was concluded that in brain metastases of mammary carcinoma Lact represents a product of ischemia preceding/during tissue decay resulting in central necrosis, rather than tumor specific metabolism resulting in increased glycolysis
Automatic tuning and matching of a small multifrequency saddle coil at 4.7 T

A new circuit design for automatically tuning and matching a saddle coil for small animal imaging is presented. This design allows working at 1H, 19F, and 3He resonance frequencies in a 4.7 T spectrometer. It is based on a balanced circuit with commercial variable capacity diodes controlled by a computer using digital potentiometers. The change between two different frequencies can be accurately performed in a few seconds. System Q is compared, between 140–210 MHz, to the same coil tuned and matched with high Q variable capacitors. Differences lower than 5% were found with a loaded coil. The proposed design has initially been evaluated in 19F and 1H NMR images acquired with a five-tube phantom. An application is also shown for the acquisition of 3He, 19F, and 1H lung images in a control ratPublicad
Quantitative proton spectroscopic imaging of the neurochemical profile in rat brain with microliter resolution at ultra-short echo times.

Proton spectroscopy allows the simultaneous quantification of a high number of metabolite concentrations termed the neurochemical profile. The spin echo full intensity acquired localization (SPECIAL) scheme with an echo time of 2.7 ms was used at 9.4T for excitation of a slab parallel to a home-built quadrature surface coil in conjunction with phase encoding in the two remaining spatial dimensions to yield an effective spatial resolution of 1.7 microL. The absolute concentrations of at least 10 metabolites were calculated from the spectra of individual voxels using LCModel analysis. The calculated concentrations were used for constructing quantitative metabolic maps of the neurochemical profile in normal and pathological rat brain. Summation of individual spectra was used to assess the neurochemical profile of unique brain regions, such as corpus callosum, in rat for the first time. Following focal ischemia in rat pups, imaging the neurochemical profile indicated increased choline groups in the ischemic core and increased glutamine in the penumbra, which is proposed to reflect glutamate excitotoxicity. We conclude that it is feasible to achieve a sensitivity that is sufficient for quantitative mapping of the neurochemical profile at microliter spatial resolution
B1+interferometry for the calibration of RF transmitter arrays

Multiple-channel RF transmission holds great promise for MRI, especially for human applications at high fields. For calibration it requires mapping the effective RF magnetic fields, B(1) (+), of the transmitter array. This is challenging to do accurately and fast due to the large dynamic range of B(1) (+) and tight SAR constraints. In the present work, this problem is revisited and solved by a novel mapping approach relying on an interference principle. The B(1) (+) fields of individual transmitter elements are measured indirectly by observing their interference with a SAR-efficient baseline RF field. In this fashion even small RF fields can be observed in the B(1) (+) -sensitive large-flip-angle regime. Based on a set of such experiments B(1) (+) maps of the individual transmitter channels are obtained by solving a linear inverse problem. Confounding relaxation and off-resonance effects are addressed by an extended signal model and nonlinear fitting. Using the novel approach, 2D mapping of an 8-channel transmitter array was accomplished in less than a minute. For validation it is demonstrated that mapping results do not vary with T(1) or parameters of the mapping sequence. In RF shimming experiments it is shown that the measured B(1) (+) maps accurately reflect the linearity of RF superposition
Feasibility of concurrent dual contrast enhancement using CEST contrast agents and superparamagnetic iron oxide particles.

Contains fulltext :
                  80681_aut.pdf (author's version ) (Open Access)
                
                  Contains fulltext :
                  80681_pub.pdf (publisher's version ) (Closed access)A major challenge for cellular and molecular MRI is to study interactions between two different cell populations or biological processes. We studied the possibility to simultaneously image contrast agents based on two different MRI contrast mechanisms: chemical exchange saturation transfer (CEST) and enhancement of T2 relaxation. Various amounts of superparamagnetic iron oxide (SPIO) nanoparticles were mixed with a fixed concentration (250 microM) of the CEST agent poly-L-lysine. T2 maps, CEST maps, and frequency-dependent saturation spectra were then measured. Color-coded overlay maps demonstrated the feasibility of concurrent dual contrast enhancement. We found that at concentrations lower than 5 microg(Fe)/mL both contrast agents can be imaged simultaneously. At higher concentrations, the iron-based agent can be used to "shut off" the signal arising from the CEST agent. These initial findings are a first step toward using dual CEST/T2 contrast imaging for studying multiple cellular or molecular targets simultaneously in vivo
Hyperpolarized lithium-6 as a sensor of nanomolar contrast agents.

Lithium is widely used in psychotherapy. The (6)Li isotope has a long intrinsic longitudinal relaxation time T(1) on the order of minutes, making it an ideal candidate for hyperpolarization experiments. In the present study we demonstrated that lithium-6 can be readily hyperpolarized within 30 min, while retaining a long polarization decay time on the order of a minute. We used the intrinsically long relaxation time for the detection of 500 nM contrast agent in vitro. Hyperpolarized lithium-6 was administered to the rat and its signal retained a decay time on the order of 70 sec in vivo. Localization experiments imply that the lithium signal originated from within the brain and that it was detectable up to 5 min after administration. We conclude that the detection of submicromolar contrast agents using hyperpolarized NMR nuclei such as (6)Li may provide a novel avenue for molecular imaging
Automatic quality assessment in structural brain magnetic resonance imaging

MRI has evolved into an important diagnostic technique in medical imaging. However, reliability of the derived diagnosis can be degraded by artifacts, which challenge both radiologists and automatic computer-aided diagnosis. This work proposes a fully-automatic method for measuring image quality of three-dimensional (3D) structural MRI. Quality measures are derived by analyzing the air background of magnitude images and are capable of detecting image degradation from several sources, including bulk motion, residual magnetization from incomplete spoiling, blurring, and ghosting. The method has been validated on 749 3D T(1)-weighted 1.5T and 3T head scans acquired at 36 Alzheimer's Disease Neuroimaging Initiative (ADNI) study sites operating with various software and hardware combinations. Results are compared against qualitative grades assigned by the ADNI quality control center (taken as the reference standard). The derived quality indices are independent of the MRI system used and agree with the reference standard quality ratings with high sensitivity and specificity (&gt;85%). The proposed procedures for quality assessment could be of great value for both research and routine clinical imaging. It could greatly improve workflow through its ability to rule out the need for a repeat scan while the patient is still in the magnet bore
Improvements in parallel imaging accelerated functional MRI using multiecho echo-planar imaging

Multiecho echo-planar imaging (EPI) was implemented for blood-oxygenation-level-dependent functional MRI at 1.5 T and compared to single-echo EPI with and without parallel imaging acceleration. A time-normalized breath-hold task using a block design functional MRI protocol was carried out in combination with up to four echo trains per excitation and parallel imaging acceleration factors R = 1-3. Experiments were conducted in five human subjects, each scanned in three sessions. Across all reduction factors, both signal-to-fluctuation-noise ratio and the total number of activated voxels were significantly lower using a single-echo EPI pulse sequence compared with the multiecho approach. Signal-to-fluctuation-noise ratio and total number of activated voxels were also considerably reduced for nonaccelerated conventional single-echo EPI when compared to three-echo measurements with R = 2. Parallel imaging accelerated multiecho EPI reduced geometric distortions and signal dropout, while it increased blood-oxygenation-level-dependent signal sensitivity all over the brain, particularly in regions with short underlying T*(2). Thus, the presented method showed multiple advantages over conventional single-echo EPI for standard blood-oxygenation-level-dependent functional MRI experiments
Automatic Placement of Outer Volume Suppression Slices in MR Spectroscopic Imaging of the Human Brain

Spatial suppression of peripheral regions (outer volume suppression) is used in MR spectroscopic imaging to reduce contamination from strong lipid and water signals. The manual placement of outer volume suppression slices requires significant operator interaction, which is time consuming and introduces variability in volume coverage. Placing a large number of outer volume saturation bands for volumetric MR spectroscopic imaging studies is particularly challenging and time consuming and becomes unmanageable as the number of suppression bands increases. In this study, a method is presented that automatically segments a high-resolution MR image in order to identify the peripheral lipid-containing regions. This method computes an optimized placement of suppression bands in three dimensions and is based on the maximization of a criterion function. This criterion function maximizes coverage of peripheral lipid-containing areas and minimizes suppression of cortical brain regions and regions outside of the head. Computer simulation demonstrates automatic placement of 16 suppression slices to form a convex hull that covers peripheral lipid-containing regions above the base of the brain. In vivo metabolite mapping obtained with short echo time proton-echo-planar spectroscopic imaging shows that the automatic method yields a placement of suppression slices that is very similar to that of a skilled human operator in terms of lipid suppression and usable brain voxels.Publicad
Adaptive Black Blood Fast Spin Echo for End-Systolic Rest Cardiac Imaging

International audienceBlack blood Fast Spin Echo imaging of the heart is usually performed during the mid-diastolic rest. This is a direct consequence of the long inversion time required to suppress the blood signal, which is constrained by the T1 of the blood, as well as the heart rate or repetition time. To overcome these constraints and to acquire black blood images in end-systolic rest, a new approach is introduced aiming at adaptively predicting the best time to prepare and acquire MR signals. It is based on an RR interval prediction algorithm and on a cardiac cycle model. Applied on fourteen healthy volunteers, the proposed method is compared to a simple alternative using a fixed delay and to the standard black blood imaging in mid- diastolic rest. Results show that the proposed method offers an increased robustness in terms of trigger delay error and image quality compared to the tested simple alternative. This is also demonstrated that the right ventricle is better depicted than in images acquired with the standard mid-diastolic rest acquisition, thanks to an image comparison done by an experienced radiologist, especially the thin right ventricle free wall
16 T Diffusion microimaging of fixed prostate tissue: Preliminary findings

Diffusion tensor microimaging was used to investigate the water diffusion properties of formalin-fixed prostate tissue at spatial resolution approaching the cellular scale. Diffusion tensor microimaging was performed at 16.4 T with 40 mu m isotropic voxels. Diffusion tensor microimaging clearly demonstrated distinct microscopic diffusion environments and tissue architecture consistent with that seen on light microscopy of the same tissue. The most restricted diffusion environment is the secretory epithelial cell layer (voxel bulk mean diffusivity, D = 0.4 +/- 0.1 x 10(-3) mm(2)/sec). Diffusion in the fibromuscular stromal matrix is relatively less restricted (D = 0.7 +/- 0.1 x 10(-3) mm(2)/sec). In tumor tissue (Gleason pattern 4+4) distinct glandular and ductal structures are absent in the diffusion-weighted images and diffusivity is low (D = 0.5 +/- 0.1 x 10(-3) mm(2)/sec). Distinct stromal and epithelial diffusion compartments are the most likely origin of biexponential diffusion decay observed in vivo. Magn Reson Med 66:244-247, 2011. (C) 2011 Wiley-Liss, Inc
Analytic Expressions for the Ultimate Intrinsic Signal-to-Noise Ratio and Ultimate Intrinsic Specific Absorption Rate in MRI

Cataloged from PDF version of article.The ultimate intrinsic signal-to-noise ratio is the highest possible
signal-to-noise ratio, and the ultimate intrinsic specific
absorption rate provides the lowest limit of the specific absorption
rate for a given flip angle distribution. Analytic expressions
for ultimate intrinsic signal-to-noise ratio and ultimate intrinsic
specific absorption rate are obtained for arbitrary sample
geometries. These expressions are valid when the distance
between the point of interest and the sample surface is smaller
than the wavelength, and the sample is homogeneous. The
dependence on the sample permittivity, conductivity, temperature,
size, and the static magnetic field strength is given in
analytic form, which enables the easy evaluation of the change in
signal-to-noise ratio and specific absorption rate when the sample
is scaled in size or when any of its geometrical or electrical
parameters is altered. Furthermore, it is shown that signal-tonoise
ratio and specific absorption rate are independent of the
permeability of the sample. As a practical case and a solution
example, a uniform, circular cylindrically shaped sample is studied.
Magn Reson Med 66:846–858, 2011. © 2011 Wiley-Liss,
In
Atlas-based automated positioning of outer volume suppression slices in short-TE 3D MR spectroscopic imaging of the human brain

Spatial suppression of peripheral lipid-containing regions in volumetric MR spectroscopic imaging (MRSI) of the human brain requires placing large numbers of outer volume suppression (OVS) slices, which is time consuming, prone to operator error and may introduce subject-dependent variability in volume coverage. We developed a novel, computationally efficient atlas-based approach for automated positioning of up to 16 OVS slices and the MRSI slab. Standardized positions in MNI atlas space were established offline using a recently developed iterative optimization procedure. During the scanning session, positions in subject space were computed using affine transformation of standardized positions in MNI space. This atlas-based approach was characterized offline using MPRAGE data collected in 11 subjects. The method was further validated in 14 subjects on a clinical 3T scanner using 3D short TE (15-20ms) Proton-Echo-Planar-Spectroscopic-Imaging (PEPSI) in upper cerebrum. Comparison of manual and automatic placement using 8 OVS slices demonstrated consistent MRSI volume selection and comparable spectral quality with similar degree of lipid suppression and number of usable voxels. Automated positioning of 16 OVS slices enabled larger volume coverage, while maintaining similar spectral quality and lipid suppression. Atlas-based automatic prescription of short TE MRSI is expected to be advantageous for longitudinal and cross sectional studiesThis work was supported in part by the
MIND Research Network (DOE Grant No. DE-FG02-99ER62764) and the University of
New Mexico School of Medicine Brain and Behavioral Illness Signature Program.Publicad
QUantitative Imaging of eXtraction of oxygen and TIssue consumption (QUIXOTIC) using venular-targeted velocity-selective spin labeling

While oxygen extraction fraction (OEF) and cerebral metabolic rate of oxygen (CMRO2) are fundamental parameters of brain health and function, a robust MRI-based mapping of OEF and CMRO2 amenable to functional MRI (fMRI) has not been established. To address this issue, a novel method called QUantitative Imaging of eXtraction of Oxygen and TIssue Consumption, or QUIXOTIC, is introduced. The key innovation in QUIXOTIC is the use of velocity-selective spin labeling to isolate MR signal exclusively from postcapillary venular blood on a voxel-by-voxel basis. Measuring the T2 of this venular-targeted blood allows calibration to venular oxygen saturation (Yv) via theoretical and experimental T2 versus blood oxygen saturation relationships. Yv is converted to OEF, and baseline CMRO2 is subsequently estimated from OEF and additional cerebral blood flow and hematocrit measurements. Theory behind the QUIXOTIC technique is presented, and implications of cutoff velocity (VCUTOFF) and outflow time parameters are discussed. Cortical gray matter values obtained with QUIXOTIC in 10 healthy volunteers are Yv = 0.73 ± 0.02, OEF = 0.26 ± 0.02, and CMRO2 = 125 ± 15 μmol/100 g min. Results are compared to global measures obtained with the T2 relaxation under spin tagging (TRUST) technique. The preliminary data presented suggest that QUIXOTIC will be useful for mapping Yv, OEF, and CMRO2, in both clinical and functional MRI settings.available in PMC 2012 December 1National Institutes of Health (U.S.) (NIH Neuroimaging Training Program Grant, 5-T32-EB001680)National Institutes of Health (U.S.) (NIH Neuroimaging Training Program Grant, 5-R01-EB002066-20)National Institutes of Health (U.S.) (Center for Functional Neuroimaging Technologies; Grant number: P41RR14075S10RR023401)Siemens Aktiengesellschaft (Siemens Medical Solutions)Harvard University--MIT Division of Health Sciences and Technology (Martinos Catalyst Fund)National Cancer Institute (U.S.) (NIH Grant number RO1 EB007942)National Institutes of Health (U.S.) (NIH Medical Scientist Training Program Fellowship, grant no. T32-GM07753
Multi-contrast reconstruction with Bayesian compressed sensing

Clinical imaging with structural MRI routinely relies on multiple acquisitions of the same region of interest under several different contrast preparations. This work presents a reconstruction algorithm based on Bayesian compressed sensing to jointly reconstruct a set of images from undersampled k-space data with higher fidelity than when the images are reconstructed either individually or jointly by a previously proposed algorithm, M-FOCUSS. The joint inference problem is formulated in a hierarchical Bayesian setting, wherein solving each of the inverse problems corresponds to finding the parameters (here, image gradient coefficients) associated with each of the images. The variance of image gradients across contrasts for a single volumetric spatial position is a single hyperparameter. All of the images from the same anatomical region, but with different contrast properties, contribute to the estimation of the hyperparameters, and once they are found, the k-space data belonging to each image are used independently to infer the image gradients. Thus, commonality of image spatial structure across contrasts is exploited without the problematic assumption of correlation across contrasts. Examples demonstrate improved reconstruction quality (up to a factor of 4 in root-mean-square error) compared with previous compressed sensing algorithms and show the benefit of joint inversion under a hierarchical Bayesian model