pinecone/core-2020-05-10-deduplication huggingface dataset:
Forced fluid dynamics from blackfolds in general supergravity backgrounds.

We present a general treatment of the leading order dynamics of the collective modes of charged dilatonic p-brane solutions of (super) gravity theories in arbitrary backgrounds. To this end we employ the general strategy of the blackfold approach which is based on a long-wavelength derivative expansion around an exact or approximate solution of the (super)gravity equations of motion. The resulting collective mode equations are formulated as forced hydrodynamic equations on dynamically embedded hypersurfaces. We derive them in full generality (including all possible asymptotic fluxes and dilaton profiles) in a far-zone analysis of the (super)gravity equations and in representative examples in a near-zone analysis. An independent treatment based on the study of external couplings in hydrostatic partition functions is also presented. Special emphasis is given to the forced collective mode equations that arise in type IIA/B and eleven-dimensional supergravities, where besides the standard Lorentz force couplings our analysis reveals additional couplings to the background, including terms that arise from Chern-Simons interactions. We also present a general overview of the blackfold approach and some of the key conceptual issues that arise when applied to arbitrary backgrounds
Resonant absorption of transverse oscillations and associated heating in a solar prominence. II. Numerical aspects

Transverse magnetohydrodynamic (MHD) waves are ubiquitous in the solar atmosphere and may be responsible for generating the Sun's million-degree outer atmosphere. However, direct evidence of the dissipation process and heating from these waves remains elusive. Through advanced numerical simulations combined with appropriate forward modeling of a prominence flux tube, we provide the observational signatures of transverse MHD waves in prominence plasmas. We show that these signatures are characterized by a thread-like substructure, strong transverse dynamical coherence, an out-of-phase difference between plane-of-the-sky motions and line-of-sight velocities, and enhanced line broadening and heating around most of the flux tube. A complex combination between resonant absorption and Kelvin–Helmholtz instabilities (KHIs) takes place in which the KHI extracts the energy from the resonant layer and dissipates it through vortices and current sheets, which rapidly degenerate into turbulence. An inward enlargement of the boundary is produced in which the turbulent flows conserve the characteristic dynamics from the resonance, therefore guaranteeing detectability of the resonance imprints. We show that the features described in the accompanying paper through coordinated Hinode and Interface Region Imaging Spectrograph observations match the numerical results well.Publisher PDFPeer reviewe
Pathogenicity of Anti-ADAMTS13 Autoantibodies in Acquired Thrombotic Thrombocytopenic Purpura.

Acquired thrombotic thrombocytopenic purpura (TTP) is an autoimmune disease in which anti-ADAMTS13 autoantibodies cause severe enzyme deficiency. ADAMTS13 deficiency causes the loss of regulation of von Willebrand factor multimeric size and platelet-tethering function, which results in the formation of disseminated microvascular platelet microthrombi. Precisely how anti-ADAMTS13 autoantibodies, or antibody subsets, cause ADAMTS13 deficiency (ADAMTS13 activity generally < 10%) has not been formally investigated.We analysed 92 acquired TTP episodes at presentation, through treatment and remission/relapse using epitope mapping and functional analyses to understand the pathogenic mechanisms of anti-ADAMTS13 IgG.89/92 of TTP episodes had IgG recognising the ADAMTS13 N-terminal domains. The central spacer domain was the only N-terminal antigenic target detected. 38/92 TTP episodes had autoantibodies recognising the N-terminal domains alone; 54/92 TTP episodes also had antibodies against the ADAMTS13 C-terminal domains (TSP2-8 and/or CUB domains). Changes in autoantibody specificity were detected in 9/16 patients at relapse, suggesting a continued development of the disease. Functional analyses on IgG from 43 patients revealed inhibitory IgG were limited to anti-spacer domain antibodies. However, 15/43 patients had autoantibodies with no detectable inhibitory action and as many as 32/43 patients had autoantibodies with inhibitory function that was insufficient to account for the severe deficiency state, suggesting that in many patients there is an alternative pathogenic mechanism. We therefore analysed plasma ADAMTS13 antigen levels in 91 acquired TTP presentation samples. We demonstrated markedly reduced ADAMTS13 antigen levels in all presentation samples, median 6% normal (range 0-47%), with 84/91 patients having < 25% ADAMTS13 antigen. ADAMTS13 antigen in the lowest quartile at first presentation was associated with increased mortality (odds ratio 5.7).Anti-spacer domain autoantibodies are the major inhibitory antibodies in acquired TTP. However, depletion of ADAMTS13 antigen (rather than enzyme inhibition) is a dominant pathogenic mechanism. ADAMTS13 antigen levels at presentation have prognostic significance. Taken together, our results provide new insights into the pathophysiology of acquired TTP
Measurements and analysis of cavitation in a pressure reducing valve during operation a case study

© 2015 The Authors. Published by Elsevier Ltd.This paper proposes a methodology and presents its practical application for evaluating whether a pressure reducing valve (PRV) is under cavitation during its operation in a water distribution system. The approach is based on collecting measurements over a 24-hour period such that high demand and low demand times are included. The collected measurements allow evaluation of four indicators related to cavitation, namely the hydraulic cavitation index, noise generated by the valve, acoustic cavitation index and the spectra of the noise. These four indicators provide sufficient information for diagnosis of cavitation with high certainty
The consequences of understanding expert probability reporting as a decision

In this paper we reiterate that the personalist interpretation of probability is inevitable and as least as informed as any other allegedly more ‘objective’ definition of probability. We also argue that the problem faced by forensic scientists, the reporting on imperfect personal knowledge, in terms of probabilities, can be reconstructed as a decision problem. Tackling this problem through a rigorous decision theoretic analysis provides further argument in support of the view that optimal probability reporting is in terms of single numbers, not intervals
Metabolic gene expression changes in astrocytes in Multiple Sclerosis cerebral cortex are indicative of immune-mediated signaling.

Emerging as an important correlate of neurological dysfunction in Multiple Sclerosis (MS), extended focal and diffuse gray matter abnormalities have been found and linked to clinical manifestations such as seizures, fatigue and cognitive dysfunction. To investigate possible underlying mechanisms we analyzed the molecular alterations in histopathological normal appearing cortical gray matter (NAGM) in MS. By performing a differential gene expression analysis of NAGM of control and MS cases we identified reduced transcription of astrocyte specific genes involved in the astrocyte-neuron lactate shuttle (ANLS) and the glutamate-glutamine cycle (GGC). Additional quantitative immunohistochemical analysis demonstrating a CX43 loss in MS NAGM confirmed a crucial involvement of astrocytes and emphasizes their importance in MS pathogenesis. Concurrently, a Toll-like/IL-1β signaling expression signature was detected in MS NAGM, indicating that immune-related signaling might be responsible for the downregulation of ANLS and GGC gene expression in MS NAGM. Indeed, challenging astrocytes with immune stimuli such as IL-1β and LPS reduced their ANLS and GGC gene expression in vitro. The detected upregulation of IL1B in MS NAGM suggests inflammasome priming. For this reason, astrocyte cultures were treated with ATP and ATP/LPS as for inflammasome activation. This treatment led to a reduction of ANLS and GGC gene expression in a comparable manner. To investigate potential sources for ANLS and GGC downregulation in MS NAGM, we first performed an adjuvant-driven stimulation of the peripheral immune system in C57Bl/6 mice in vivo. This led to similar gene expression changes in spinal cord demonstrating that peripheral immune signals might be one source for astrocytic gene expression changes in the brain. IL1B upregulation in MS NAGM itself points to a possible endogenous signaling process leading to ANLS and GGC downregulation. This is supported by our findings that, among others, MS NAGM astrocytes express inflammasome components and that astrocytes are capable to release Il-1β in-vitro. Altogether, our data suggests that immune signaling of immune- and/or central nervous system origin drives alterations in astrocytic ANLS and GGC gene regulation in the MS NAGM. Such a mechanism might underlie cortical brain dysfunctions frequently encountered in MS patients
Pharmacological inhibition of CB1 cannabinoid receptor protects against doxorubicin-induced cardiotoxicity

OBJECTIVES: We aimed to explore the effects of pharmacologic inhibition of cannabinoid-1 (CB1) receptor in in vivo and in vitro models of doxorubicin (DOX)-induced cardiotoxicity. BACKGROUND: Doxorubicin is one of the most potent antitumor agents available; however, its clinical use is limited because of the risk of severe cardiotoxicity. Endocannabinoids mediate cardiodepressive effects through CB1 receptors in various pathophysiological conditions, and these effects can be reversed by CB1 antagonists. METHODS: Left ventricular function was measured by Millar pressure-volume system. Apoptosis markers, CB1/CB2 receptor expression, and endocannabinoid levels were determined by immunohistochemistry, Western blot, reverse transcription-polymerase chain reaction, real-time polymerase chain reaction, flow cytometry, fluorescent microscopy, and liquid chromatography/in-line mass spectrometry techniques. RESULTS: Five days after the administration of a single dose of DOX (20 mg/kg intraperitoneally) to mice, left ventricular systolic pressure, maximum first derivative of ventricular pressure with respect to time (+dP/dt), stroke work, ejection fraction, cardiac output, and load-independent indexes of contractility (end-systolic pressure-volume relation, preload-recruitable stroke work, dP/dt-end-diastolic volume relation) were significantly depressed, and the myocardial level of the endocannabinoid anandamide (but not CB1/CB2 receptor expression) was elevated compared with vehicle-treated control mice. Treatment with the CB1 antagonists rimonabant or AM281 markedly improved cardiac dysfunction and reduced DOX-induced apoptosis in the myocardium. Doxorubicin also decreased cell viability and induced apoptosis in the H9c2 myocardial cell line measured by flow cytometry and fluorescent microscopy, which were prevented by the preincubation of the cells with either CB1 antagonist, but not with CB1 and CB2 agonists and CB2 antagonists. CONCLUSIONS: These data suggest that CB1 antagonists may represent a new cardioprotective strategy against DOX-induced cardiotoxicity
International Geosphere-Biosphere Programme and Earth system science: Three decades of co-evolution

The maturing of Earth system science as a discipline has underpinned the development of concepts such as the Anthropocene and planetary boundaries. The International Geosphere–Biosphere Programme’s (IGBP) scientific and institutional history is deeply intertwined with the development of the concept of the Earth as a system as well as the discipline of Earth system science. Here we frame the broader programme of IGBP through its core projects and programme-level activities and illustrate this co-evolution. We identify and discuss three phases in the programme’s history. In its first phase beginning in 1986, IGBP focused on building international networks and global databases that were key to understanding Earth system component processes. In the early 2000s IGBP’s first major synthesis and associated activities promoted a more integrated view of the Earth system informed by greater emphasis on interdisciplinarity. Human actions were seen as an integral part of the Earth system and the concept of the Anthropocene came to the fore. In recent years IGBP has increased focus on sustainability and multifaceted engagement with policy processes. IGBP closed at the end of 2015 after three decades of coordinating international research on global change. The programme’s longevity points to its capacity to adapt its scientific and institutional structures to changing scientific and societal realities. Its history may offer lessons for the emerging Future Earth initiative as it seeks to rally international collaborative research around sustainability and solutions.Peer-reviewedPublisher Versio
Study of double parton scattering using W + 2-jet events in proton-proton collisions at √s = 7 TeV

Double parton scattering is investigated in proton-proton collisions at √s = 7 TeV where the final state includes a W boson, which decays into a muon and a neutrino, and two jets. The data sample corresponds to an integrated luminosity of 5 fb[superscript −1], collected with the CMS detector at the LHC. Observables sensitive to double parton scattering are investigated after being corrected for detector effects and selection efficiencies. The fraction of W + 2-jet events due to double parton scattering is measured to be 0.055 ± 0.002 (stat.) ± 0.014 (syst.). The effective cross section, σ [subscript eff], characterizing the effective transverse area of hard partonic interactions in collisions between protons is measured to be 20.7 ± 0.8(stat.) ± 6.6(syst.)mb.United States. Dept. of EnergyNational Science Foundation (U.S.)Alfred P. Sloan Foundatio
Observation of a new boson with mass near 125 GeV in pp collisions at sqrt(s) = 7 and 8 TeV

A detailed description is reported of the analysis used by the CMS Collaboration in the search for the standard model Higgs boson in pp collisions at the LHC, which led to the observation of a new boson. The data sample corresponds to integrated luminosities up to 5.1 inverse femtobarns at sqrt(s) = 7 TeV, and up to 5.3 inverse femtobarns at sqrt(s) = 8 TeV. The results for five Higgs boson decay modes gamma gamma, ZZ, WW, tau tau, and bb, which show a combined local significance of 5 standard deviations near 125 GeV, are reviewed. A fit to the invariant mass of the two high resolution channels, gamma gamma and ZZ to 4 ell, gives a mass estimate of 125.3 +/- 0.4 (stat) +/- 0.5 (syst) GeV. The measurements are interpreted in the context of the standard model Lagrangian for the scalar Higgs field interacting with fermions and vector bosons. The measured values of the corresponding couplings are compared to the standard model predictions. The hypothesis of custodial symmetry is tested through the measurement of the ratio of the couplings to the W and Z bosons. All the results are consistent, within their uncertainties, with the expectations for a standard model Higgs boson
Aspartic acid side chain effect - experimental and theoretical insight

Gas-phase H/D exchange and Density Functional Theory study of the Asp and Glu side chain carboxylic group intrinsic reactivity is reported. H/D exchange site specific treatment and some additional theoretical calculations showed that a side chain carboxylic group may initiate proton transfer along with bond formation to one of its oxygens i.e. possibility to initiate selective of cleavage peptide bond (&quot;aspartic acid effect&quot;). That finding is used to select aspartic acid cleavage mechanisms (side chain proton transfer either to backbone carbonyl or to amide nitrogen) for further computational study. B3LYP/6-31G(d) and G3(MP2)//B3LYP potential energy profiles of both mechanisms on a model system CH3CO-Asp-NHCH3 were constructed. Although energy employed in low energy collision induced dissociation suffices for both mechanisms thresholds, energy transfered to specific modes suggests a complex one step mechanism of proton transfer (from the side chain carboxylic group to the backbone amide group), bond formation ( between deprotonated carboxylic group and carbon atom of the backbone carbonyl) and peptide bond cleavage as favorable
Proof of Concept Center - A Promising Tool for Innovative Development at Entrepreneurial Universities

The article reviews the USA experience in creating the new element of national innovative infrastructure for Russia - the Proof of Concept Center (POOC). The article uses the term POCC as an abbreviation; it considers the POCC functions, its role in the innovative chain, and its difference from Centers for Technology Transfer. Evidently, the key feature of POCC is the availability of its own foundation for financing innovative projects. The article analyzes the major sources for these foundations and suggests distinguishing the two types of POCC in terms of financing. It presents examples of POCC of the USA of varied scale and which were founded at different times. It highlights the correlation between the establishment of POCC and the increasing number of innovative companies. The work also presents information about the structure analogous to the first type of POCC in Russia, and considers the potential for creating university-based POCC of the second type. The article also presents information regarding the high potential and the efficiency of POCC as a unit of innovative infrastructure
Rapidity and transverse momentum dependence of inclusive J/ψ production in pp collisions at s=7 TeV

AbstractThe ALICE experiment at the LHC has studied inclusive J/ψ production at central and forward rapidities in pp collisions at s=7 TeV. In this Letter, we report on the first results obtained detecting the J/ψ through the dilepton decay into e+e− and μ+μ− pairs in the rapidity ranges |y|<0.9 and 2.5<y<4, respectively, and with acceptance down to zero pT. In the dielectron channel the analysis was carried out on a data sample corresponding to an integrated luminosity Lint=5.6 nb−1 and the number of signal events is NJ/ψ=352±32(stat.)±28(syst.); the corresponding figures in the dimuon channel are Lint=15.6 nb−1 and NJ/ψ=1924±77(stat.)±144(syst.). The measured production cross sections are σJ/ψ(|y|<0.9)=10.7±1.0(stat.)±1.6(syst.)−2.3+1.6(syst.pol.)μb and σJ/ψ(2.5<y<4)=6.31±0.25(stat.)±0.76(syst.)−1.96+0.95(syst.pol.)μb. The differential cross sections, in transverse momentum and rapidity, of the J/ψ were also measured
Study of semileptonic B¯⁎→Pℓν¯ℓ decays

AbstractIn anticipation of abundant B⁎ data samples at high-luminosity heavy-flavor experiments in the future, the tree-dominated semileptonic B¯u,d,s⁎→Pℓ−ν¯ℓ (P=D,Ds,π,K) decays are studied within the Standard Model. After a detailed calculation of the helicity amplitudes, the theoretical predictions for branching fraction (decay rate), lepton spin asymmetry, forward–backward asymmetry and ratio RD⁎(L) are firstly presented. It is found that the CKM-favored B¯⁎→Dℓ−ν¯ℓ decays have relatively large branching fractions of O(10−9)∼O(10−7), and are in the scope of running LHC and forthcoming SuperKEKB/Belle-II experiments
Repeat interventions as a long-term treatment strategy in the management of progressive coronary artery disease

AbstractObjectives.This study investigates whether repeat coronary interventions, applied over an extended time period, can successfully curtail the progression of ischemic symptoms and angiographic lumen narrowing.Background.Coronary artery disease is a chronic and generally progressive disorder, and potential treatment strategies should be examined and compared with this chronicity in mind. Percutaneous interventional revascularization procedures could theoretically be useful in controlling progression of the disease through repeated use as new coronary lesions arise. However, the outcome of this long-term management concept has not previously been subjected to detailed investigation.Methods.From a consecutive series of 4,357 interventional cardiac procedures, 544 patients were identified who received two or more interventions during the 13-year study period. These patients were categorized into one of three groups: restenosis(repeat interventions limited to the same target segment, n = 261), new stenosis(all repeat interventions directed to stenoses not previously treated, n = 155) or both(repeat interventions directed both to the same and to different target lesions, n = 128).Results.Two to five procedures were performed per patient; the time period (mean ± SD) separating each procedure was significantly less (p < 0.0001) for the restenosis group (4.2 ± 2.3 months) than for the new stenosis (24.2 ± 23.5 months) or the “both” groups (11.4 ± 11.0 months). Despite the need for repeat procedures, the severity of angina (mean New York Heart Association functional class 1.6 ± 0.9) after 6.2 ± 2.3 years of follow-up was substantially better than before the initial procedure (mean functional class 3.2 ± 0.8), with a similar magnitude of change found in all three groups. This long-term functional improvement was mirrored by a corresponding anatomic improvement, with the mean number of diseased vessels remaining constant at the time of each procedure (1.5 ± 0.7, 1.5 ± 0.7 and 1.6 ± 0.7, respectively, for the first, second and third procedures, p = NS). The restenosis and the new stenosis groups also demonstrated statistically similar annual rates of mortality (1.9% vs. 1.8%) and coronary surgery (2.3% vs. 2.6%), although the restenosis group had a lower rate of infarction (1.4% vs. 3.2%, p = 0.002).Conclusions.Repeat interventional treatment of newly acquired stenoses provides a rational approach for the long-term management of chronic coronary artery disease. In addition to yielding a favorable late outcome, the use of this strategy can result in sustained functional improvement and can check the progression of clinically significant stenoses
Problems of variable biomarker evaluation in stratified medicine research—A case study of ERCC1 in non-small-cell lung cancer

AbstractObjectivesConsistency of procedures for the evaluation of a predictive biomarker (including sample collection, processing, assay and scoring system) based on adequate evidence is necessary to implement research findings in clinical practice. As a case study we evaluated how a particular predictive biomarker, ERCC1, was assessed in research on platinum-based chemotherapy in non-small-cell lung cancer and what motivated the choice of procedure.Materials and methodsA systematic review of studies completed since 2007 and ongoing was undertaken. Questionnaires on details of ERCC1 evaluation procedures and the rationale for their choice were sent to contacts of identified studies.ResultsThirty-three studies of platinum-based chemotherapy in non-small-cell lung cancer using ERCC1 were identified. A reply to the questionnaire was received for 16 studies. Procedures for ERCC1 evaluation varied substantially and included reverse transcriptase quantitative polymerase chain reaction (nine studies), immunohistochemistry (five studies) and other methods (multiple methods–two studies, NER polymorphism–one study). In five studies ERCC1 use was planned, but not undertaken. In nine data was insufficient to identify the procedure. For each assay there was variation across studies in the details of the laboratory techniques, scoring systems and methods for obtaining samples.ConclusionsWe found large variation across studies in ERCC1 evaluation procedures. This will limit the future comparability of results between these different studies. To enable evidence-based clinical practice, consensus is needed on a validated procedure to assess a predictive biomarker in the early phase of research. We believe that ERCC1 is not untypical of biomarkers being investigated for stratified medicine