pinecone/core-2020-05-10-deduplication huggingface dataset:
A viral suppressor of RNA silencing inhibits ARGONAUTE 1 function by precluding target RNA binding to pre-assembled RISC

In most eukaryotes, RNA silencing is an adaptive immune system regulating key biological processes including antiviral defense. To evade this response, viruses of plants, worms and insects have evolved viral suppressors of RNA silencing proteins (VSRs). Various VSRs, such as P1 from Sweet potato mild mottle virus (SPMMV), inhibit the activity of RNA-induced silencing complexes (RISCs) including an ARGONAUTE (AGO) protein loaded with a small RNA. However, the specific mechanisms explaining this class of inhibition are unknown. Here, we show that SPMMV P1 interacts with AGO1 and AGO2 from Arabidopsis thaliana, but solely interferes with AGO1 function. Moreover, a mutational analysis of a newly  identified zinc finger domain in P1 revealed that this domain could represent an  effector domain as it is required for P1 suppressor activity but not for AGO1 binding. Finally, a comparative analysis of the target RNA binding capacity of AGO1 in the presence of wild-type or suppressor-defective P1 forms revealed that  P1 blocks target RNA binding to AGO1. Our results describe the negative regulation of RISC, the small RNA containing molecular machine
Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation

Genome-wide association studies (GWASs) have revealed increased breast cancer risk associated with multiple genetic variants at 5p12. Here, we report the fine mapping of this locus using data from 104,660 subjects from 50 case-control studies in the Breast Cancer Association Consortium (BCAC). With data for 3,365 genotyped and imputed SNPs across a 1 Mb region (positions 44,394,49545,364,167; NCBI build 37), we found evidence for at least three independent signals: the strongest signal, consisting of a single SNP rs10941679, was associated with risk of estrogen-receptor-positive (ER+) breast cancer (per-g allele ER+ = 1.15; 95% CI 1.13-1.18; p = 8.35 x 10(-3)). After adjustment for rs10941679, we detected signal 2, consisting of 38 SNPs more strongly associated with ER-negative (ER-) breast cancer (lead SNP rs6864776: per-a allele OR ER- = 1.10; 95% CI 1.05-1.14; p conditional = 1.44 x 10(-12)), and a single signal 3 SNP (rs200229088: per-t allele OR ER+ = 1.12; 95% CI 1.09-1.15; p conditional = 1.12 x 10(-05)). Expression quantitative trait locus analysis in normal breast tissues and breast tumors showed that the g (risk) allele of rs10941679 was associated with increased expression of FGF10 and MRPS30. Functional assays demonstrated that SNP rs10941679 maps to an enhancer element that physically interacts with the FGF10 and MRPS30 promoter regions in breast cancer cell lines. FGF10 is an oncogene that binds to FGFR2 and is overexpressed in similar to 10% of human breast cancers, whereas MRPS30 plays a key role in apoptosis. These data suggest that the strongest signal of association at 5p12 is mediated through coordinated activation of FGF10 and MRPS30, two candidate genes for breast cancer pathogenesis
Sensory analysis and consumer acceptance of 140 high-quality extra virgin olive oils

BACKGROUND: Sensory analysis is a crucial tool for evaluating the quality of extra virgin olive oils. One aim of such an investigation is to verify if the sensory attributes themselves – which are strictly related to volatile and phenolic compounds – may permit the discrimination of high-quality products obtained by olives of different cultivars and/or grown in various regions. Moreover, a crucial topic is to investigate the interdependency between relevant parameters etermining consumer acceptance and objective sensory characteristics evaluated by the panel test.
RESULTS: By statistically analysing the sensory results, a grouping – but not discriminatory – effect was shown for some cultivars and some producing areas. The preference map shows that the most appreciated samples by consumers were situated in the direction of the ‘ripe fruity’ and ‘sweet’ axis and opposite to the ‘bitter’ and ‘other attributes’ (pungent, green fruity, freshly cut grass, green tomato, harmony, persistency) axis.
CONCLUSION: Extra virgin olive oils produced from olives of the same cultivars and grown in the same areas shared similar sensorial attributes. Some differences in terms of expectation and interpretation of sensory characteristics of extra virgin olive oils might be present for consumers and panellists: most of the consumers appear unfamiliar with positive sensorial attributes, such as bitterness and pungency
Fatty acid methyl and ethyl esters as well as wax esters for evaluating the quality of olive oils

Erworben im Rahmen der Schweizer Nationallizenzen (http://www.nationallizenzen.ch)A promising correlation between chemical analysis and sensorial evaluation was confirmed: extra virgin olive oils with low contents of methyl and ethyl esters of fatty acids as well as straight chain wax esters were sensorially evaluated as being of high quality, whereas some with high contents were even devaluated as not being of extra virgin quality. Methanol and ethanol formed during fermentation in degrading olives are esterified, largely by transesterification with fatty acids from the triglycerides, and in this way transferred into the pressed oil. The presence of high contents of methyl and ethyl esters in degrading olives was confirmed. Wax esters from the skin of the olives are extracted at low yields, whereby the yield increases when the olives are soft and possibly degrading. High wax ester contents may, therefore, stand for mild oils, but also for deficient oils
Foreign direct investment and the ease of doing business

This paper examines the effect that a country’s business regulatory environment has\ud
on the amount of foreign direct investment it attracts. We use the World Bank’s Ease\ud
of Doing Business ranking to capture the costs that firms face when operating in a\ud
country. Several interesting results emerge. Firstly, the Doing Business rank is highly\ud
significant when included in a standard empirical FDI model estimated on data averaged\ud
over the period 2004-2009. Secondly, the significance of the overall Doing Business is\ud
driven by the Ease of Trading Across Borders component. Thirdly, the relationship is\ud
significant for middle income countries, but not for the World’s poorest region, SubSaharan\ud
Africa, or for the OECD. Finally, we find no evidence that the ease of doing\ud
business of nearby countries has an effect on the FDI that a country gets in general
The Bayesian Who Knew Too Much

In several papers, John Norton has argued that Bayesianism cannot handle ignorance adequately due to its inability to distinguish between neutral and disconfirming evidence. He argued that this inability sows confusion in, e.g., anthropic reasoning in cosmology or the Doomsday argument, by allowing one to draw unwarranted conclusions from a\ud
lack of knowledge. Norton has suggested criteria for a candidate for representation of neutral support. Imprecise credences (families of credal probability functions) constitute a Bayesian-friendly framework that allows us to avoid inadequate neutral priors and better handle ignorance. The imprecise model generally agrees with Norton's representation of ignorance but requires that his criterion of self-duality be reformulated or abandoned
Low back pain and postural control, effects of task difficulty on centre of pressure and spinal kinematics

Association of low back pain and standing postural control (PC) deficits are reported inconsistently. Demands on PC adaptation strategies are increased by restraining the input of visual or somatosensory senses. The objectives of the current study are, to investigate whether PC adaptations of the spine, hip and the centre of pressure (COP) differ between patients reporting non-specific low back pain (NSLBP) and asymptomatic controls. The PC adaption strategies of the thoracic and lumbar spine, the hip and the COP were measured in fifty-seven NSLBP patients and 22 asymptomatic controls. We tested three "feet together" conditions with increasing demands on PC strategies, using inertial measurement units (IMUs) on the spine and a Wii balance board for centre of pressure (COP) parameters. The differences between NSLBP patients and controls were most apparent when the participants were blindfolded, but remaining on a firm surface. While NSLBP patients had larger thoracic and lumbar spine mean absolute deviations of position (MADpos) in the frontal plane, the same parameters decreased in control subjects (relative change (RC): 0.23, 95% confidence interval: 0.03 to 0.45 and 0.03 to 0.48). The Mean absolute deviation of velocity (MADvel) of the thoracic spine in the frontal plane showed a similar and significant effect (RC: 0.12 95% CI: 0.01 to 0.25). Gender, age and pain during the measurements affected some parameters significantly. PC adaptions differ between NSLBP patients and asymptomatic controls. The differences are most apparent for the thoracic and lumbar parameters of MADpos, in the frontal plane and while the visual condition was removed
A Keyword-driven approach for generating OWL DL conformance test data

The conformance of semantic technologies has to be systematically evaluated to measure and verify the real adherence of these technologies to the Semantic Web standards. Currente valuations of semantic technology conformance are not exhaustive enough and do not directly cover user requirements and use scenarios, which raises the need for a simple, extensible and parameterizable method to generate test data for such evaluations. To address this need, this paper presents a keyword-driven approach for generating ontology language conformance test data that can be used to evaluate semantic technologies, details the definition of a test suite for evaluating OWL DL conformance using this approach,and describes the use and extension of this test suite during the evaluation of some tools
Validation of the German version of the Career Adapt-Abilities Scale and its relation to orientations to happiness and work stress

Career adapt-ability has recently gained momentum as a psychosocial construct that not only
has much to offer the field of career development, but also contributes to positive coping,
adjustment and self-regulation through the four dimensions of concern, control, curiosity and
confidence. The positive psychology movement, with concepts such as the orientations to
happiness, explores the factors that contribute to human flourishing and optimum functioning.
This research has two main contributions; 1) to validate a German version of the Career
Adapt-Abilities Scale (CAAS), and 2) to extend the contribution of adapt-abilities to the field
of work stress and explore its mediating capacity in the relation between orientations to
happiness and work stress. We used a representative sample of the German-speaking Swiss
working population including 1204 participants (49.8% women), aged between 26 and 56
(Mage = 42.04). Results indicated that the German version of the CAAS is valid, with overall
high levels of model fit suggesting that the conceptual structure of career adapt-ability
replicates well in this cultural context. Adapt-abilities showed a negative relationship to work
stress, and a positive one with orientations to happiness. The engagement and pleasure scales
of orientations to happiness also correlated negatively with work stress. Moreover, career
adapt-ability mediates the relationship between orientations to happiness and work stress. In
depth analysis of the mediating effect revealed that control is the only significant mediator.
Thus control may be acting as a mechanism through which individuals attain their desired life
at work subsequently contributing to reduced stress levels
Parametric CAPEX, OPEX, and LCOE expressions for offshore wind farms based on global deployment parameters

Installed wind energy capacity has been rapidly increasing over the last decade, with deployments in deeper waters and further offshore, with higher turbine ratings within new farms. Understanding the impact of different deployment factors on the overall cost of wind farms is pertinent toward benchmarking the potential of different investment decision alternatives. In this article, a set of parametric expressions for capital expenditure, operational expenditure, and levelized cost of energy are developed as a function of wind turbine capacity (), water depth (WD), distance from port (D), and wind farm capacity (). These expressions have been developed through a series of simulations based on a fully integrated, tested cost model which are then generalized through the application of appropriate nonlinear regression equations for a typical offshore wind farm investment and taking into account most current published cost figures. The effectiveness of the models are countersigned through a series of cases, estimating the predicted values with a maximum error of 3.3%. These expressions will be particularly useful for the preliminary assessment of available deployment sites, offering cost estimates based on global decision variables
The not-so-Dark Ages: Ecology for human growth in medieval and early Twentieth Century Portugal as inferred from skeletal growth profiles

This study attempts to address the issue of relative living standards in Portuguese medieval and early 20th century periods. Since the growth of children provides a good measure of environmental quality for the overall population, the skeletal growth profiles of medieval Leiria and early 20th century Lisbon were compared. Results show that growth in femur length of medieval children did not differ significantly from that of early 20th century children, but after puberty medieval adolescents seem to have recovered, as they have significantly longer femora as adults. This is suggestive of greater potential for catch-up growth in medieval adolescents. We suggest that this results from distinct child labor practices, which impact differentially on the growth of Leiria and Lisbon adolescents. Work for medieval children and adolescents were related to family activities, and care and attention were provided by family members. Conversely, in early 20th century Lisbon children were more often sent to factories at around 12 years of age as an extra source of family income, where they were exploited for their labor. Since medieval and early 20th century children were stunted at an early age, greater potential for catch-up growth in medieval adolescents results from exhausting work being added to modern adolescent's burdens of disease and poor diet, when they entered the labor market. Although early 20th century Lisbon did not differ in overall unfavorable living conditions from medieval Leiria, after puberty different child labor practices may have placed modern adolescents at greater risk of undernutrition and poor growth. Am J Phys Anthropol, 2008. © 2008 Wiley-Liss, Inc.http://dx.doi.org/10.1002/ajpa.2091
Synthesis of Poly(lauryl acrylate) by Single-Electron Transfer/Degenerative Chain Transfer Living Radical Polymerization Catalyzed by Na2S2O4 in Water

Living radical polymerization of lauryl acrylate was achieved by SET/DTLRP in water catalyzed by sodium dithionite. The work describes the synthesis of a highly hydrophobic and polar monomer in aqueous medium. The plots of  versus conversion and ln[M]0/[M] versus time are linear, indicating a controlled polymerization. This method leads to alpha,omega-diiodopoly(lauryl acrylate)s that can be further functionalized. The MWDs were determined using a combination of three detectors: RALLS, DV, and RI. The method studied in this work represents a possible route to prepare well-tailored macromolecules made of LA in environment friendly reaction medium. The syndiotactic content is 75%.http://dx.doi.org/10.1002/macp.20070001
Do Invertebrate Activity and Current Velocity Affect Fungal Assemblage Structure in Leaves?

In this study we assessed the effect of current velocity and shredder presence, manipulated in artificial channels, on the structure of the fungal assemblage colonizing alder (Alnus glutinosa (L.) Gaertner) leaves incubated in coarse and fine mesh bags. Fungal sporulation rates, cumulative conidial production and number of species of aquatic hyphomycetes were higher in leaves exposed to high rather than to low current velocity. The opposite was observed regarding Simpson's index (D) on the fungal assemblage. Some species of aquatic hyphomycetes were consistently stimulated in high current channels. No effect of shredders or of mesh type was observed. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)http://dx.doi.org/10.1002/iroh.20051083
Olfactory coordinated area coverage

Abstract  This paper proposes an olfaction based methodology to automatically cover an unknown area enabling the decoupled cooperation of a group of floor cleaning mobile robots. This method is based on the utilisation of low cost chemical sensors in cleaning mobile robots, in order to differentiate clean from dirty areas. The experimental results show that the use of olfactory capabilities allows to efficiently cover and clean a certain area, and demonstrate the possibility of coordinating several mobile robots without the need of expensive sensing capabilities, map building or complex algorithms for task scheduling.http://dx.doi.org/10.1007/s10514-006-7099-
Competition for feeding in waders: a case study in an estuary of south temperate Europe (Mondego, Portugal)

The loss of feeding areas may pose a threat to many wintering waders because increased competition arising from reduced foraging space may force birds either to emigrate or to die. This has been demonstrated to occur in northwest European estuaries, but virtually no studies have been performed in the estuaries of southern Europe, where the loss of supratidal habitats (salines and saltmarshes), rather than intertidal habitats, are currently the main threat to waders’ habitats. If these habitats are lost, waders may be forced to move to the intertidal mudflats, perhaps increasing competition between individuals and ultimately leading to starvation or emigration. We tested this hypothesis in the Mondego estuary, a small estuary on Portugal’s west coast, which is presently under heavy human pressure. We used indirect methods to test for the occurrence of both components of intra-specific competition: interference and prey depletion. We found no evidence that either interference or depletion competition was occurring at present, either on the mudflats or in the salines. Overall, the results suggest that the intertidal mudflats may still be able to accommodate birds displaced from the destroyed supratidal salines, but modelling is required to predict the effect that the combined loss of feeding area and foraging time that this would entail would have on their fitness, and thus numbers.http://dx.doi.org/10.1007/s10750-005-0541-
Rotational isomerism of acetic acid isolated in rare-gas matrices: Effect of medium and isotopic substitution on IR-induced isomerization quantum yield and cis→trans tunneling rate

Rotational isomerization of acetic acid (CH3COOH) is studied in Ar, Kr, and Xe matrices. The light-induced trans→cis reaction is promoted using resonant excitation of a number of modes in the 3500–7000 cm−1 region, and the quantum yields for this process are measured for various acetic acid isotopologues and matrix materials. For excitation of acetic acid at energies above the predicted isomerization energy barrier (⩾4400 cm−1), the measured quantum yields are in average 2%–3%, and this is one order of magnitude smaller than the corresponding values known for formic acid (HCOOH). This difference is interpreted in terms of the presence of the methyl group in acetic acid, which enhances energy relaxation channels competing with the rotational isomerization. This picture is supported by the observed large effect of deuteration of the methyl group on the photoisomerization quantum yield. The trans→cis reaction quantum yields are found to be similar for Ar, Kr, and Xe matrices, suggesting similar energy relaxation processes for this molecule in the various matrices. The IR-induced cis→trans process, studied for acetic acid deuterated in the hydroxyl group, shows reliably larger quantum yields as compared with the trans→cis process. For pumping of acetic acid at energies below the predicted isomerization barrier, the trans→cis reaction quantum yields decrease strongly when the photon energy decreases, and tunneling is the most probable mechanism for this process. For the cis→trans dark reaction, the observed temperature and medium effects indicate the participation of the lattice phonons in the tunneling-induced process
Novel fast random search clustering approach for mixing matrix identification in MIMO linear blind inverse problems with sparse inputs

In this paper we propose a novel fast random search clustering (RSC) algorithm for mixing matrix identification in multiple input multiple output (MIMO) linear blind inverse problems with sparse inputs. The proposed approach is based on the clustering of the observations around the directions given by the columns of the mixing matrix that occurs typically for sparse inputs. Exploiting this fact, the RSC algorithm proceeds by parameterizing the mixing matrix using hyperspherical coordinates, randomly selecting candidate basis vectors (i.e. clustering directions) from the observations, and accepting or rejecting them according to a binary hypothesis test based on the Neyman–Pearson criterion. The RSC algorithm is not tailored to any specific distribution for the sources, can deal with an arbitrary number of inputs and outputs (thus solving the difficult under-determined problem), and is applicable to both instantaneous and convolutive mixtures. Extensive simulations for synthetic and real data with different number of inputs and outputs, data size, sparsity factors of the inputs and signal to noise ratios confirm the good performance of the proposed approach under moderate/high signal to noise ratios.\ud
RESUMEN.\ud
Método de separación ciega de fuentes para señales dispersas basado en la identificación de la matriz de mezcla mediante técnicas de "clustering" aleatorio
A portable centrifugal analyser for liver function screening

Mortality rates of up to 50% have been reported after liver failure due to drug-induced hepatotoxicity and certain viral infections(Gao et al. 2008). These adverse conditions frequently affect HIV and tuberculosis patients on regular medication in resource-poor settings. Here, we report full integration of sample preparation with read-out of a 5-parameter liver assay panel (LAP) on a portable, easy-to-use, fast and cost- efficient centrifugal microfluidic analysis system (CMAS). Our unique, dissolvable-film based centrifugo- pneumatic valving was employed to provide sample-to-answer fashion automation for plasma extraction (from finger-prick of blood), metering and aliquoting into separate reaction chambers for parallelized colorimetric quantification during rotation. The entire LAP completes in less than 20 minutes while using only a tenth the reagent volumes when compared with standard hospital laboratory tests. Accuracy of in-situ liver function screening was validated by 96 separate tests with an average coefficient of variance (CV) of 7.9% compared to benchtop and hospital lab tests. Unpaired two sample statistical t-tests were used to compare the means of CMAS and benchtop reader, on one hand; and CMAS and hospital tests on the other. The results demonstrate no statistical difference between the respective means with 94% and 92% certainty of equivalence, respectively. The portable platform thus saves significant time, labour and costs compared to established technologies, and therefore comply with typical restrictions on lab infrastructure, maintenance, operator skill and costs prevalent in many field clinics of the developing world. It has been successfully deployed in a centralised lab in Nigeria