pinecone/core-2020-05-10-deduplication huggingface dataset:
Endosymbiotic bacteria nodulating a new endemic lupine Lupinus mariae-josephi from alkaline soils in Eastern Spain represent a new lineage within the Bradyrhizobium genus

Lupinus mariae-josephi is a recently described endemic Lupinus species from a small area in Eastern Spain where it thrives in soils with active lime and high pH. The L. mariae-josephi root symbionts were shown to be very slow-growing bacteria with different phenotypic and symbiotic characteristics from those of Bradyrhizobium strains nodulating other Lupinus. Their phylogenetic status was examined by multilocus sequence analyses of four housekeeping genes (16S rRNA, glnII, recA, and atpD) and showed the existence of a distinct evolutionary lineage for L. mariae-josephi that also included Bradyrhizobium jicamae. Within this lineage, the tested isolates clustered in three different sub-groups that might correspond to novel sister Bradyrhizobium species. These core gene analyses consistently showed that all the endosymbiotic bacteria isolated from other Lupinus species of the Iberian Peninsula were related to strains of the B. canariense or B. japonicum lineages and were separate from the L. mariae-josephi isolates. Phylogenetic analysis based on nodC symbiotic gene sequences showed that L. mariae-josephi bacteria also constituted a new symbiotic lineage distant from those previously defined in the genus Bradyrhizobium. In contrast, the nodC genes of isolates from other Lupinus spp. from the Iberian Peninsula were again clearly related to the B. canariense and B. japonicum bv. genistearum lineages. Speciation of L. mariae-josephi bradyrhizobia may result from the colonization of a singular habitat by their unique legume host
Highly conductive p++-AlGaAs/n ++-GaInP tunnel junctions for ultra-high concentrator solar cells

Tunnel junctions are key for developing multijunction solar cells (MJSC) for ultra-high concentration applications. We have developed a highly conductive, high bandgap p  + + -AlGaAs/n  + + -GaInP tunnel junction with a peak tunneling current density for as-grown and thermal annealed devices of 996 A/cm 2 and 235 A/cm 2, respectively. The J–V characteristics of the tunnel junction after thermal annealing, together with its behavior at MJSCs typical operation temperatures, indicate that this tunnel junction is a suitable candidate for ultra-high concentrator MJSC designs. The benefits of the optical transparency are also assessed for a lattice-matched GaInP/GaInAs/Ge triple junction solar cell, yielding a current density increase in the middle cell of 0.506 mA/cm 2 with respect to previous designs
Efficient exact pattern-matching in proteomic sequences

This paper proposes a novel algorithm for complete exact pattern-matching focusing the specificities of protein sequences (alphabet of 20 symbols) but, also highly efficient considering larger alphabets. The searching strategy uses large search windows allowing multiple alignments per iteration. A new filtering heuristic, named compatibility rule, contributed decisively to the efficiency improvement. The new algorithm’s performance is, on average, superior in comparison with its best-rated competitors
Analysis of phase-resolved partial discharge patterns of voids based on a stochastic process approach

A method is presented for the determination of physical discharge parameters for partial discharges (PD) of voids in solid insulation. Based on a recently developed stochastic theory of PD processes, a statistical analysis of a measured Phase-Resolved Partial Discharge (PRPD) pattern allows the de-termination of the relevant physical parameters like first electron availability or decay time con-stants for deployed charge carriers. These parameters can be estimated directly from the measured patterns without the need of performing simulations. Furthermore, error bounds for the parameter values can be given.
The parameter estimation algorithm is based on the analysis of a contiguous region of the PRPD pattern where this region can be chosen nearly arbitrarily. Thus, even patterns with several active PD defects or patterns which are corrupted by noise can be analyzed.
The method is applied to a sequence of patterns of a void in epoxy resin. The change in first elec-tron availability in the course of a day can be determined quantitatively from the data while the other physical parameters remain constant
Revisiting slope influence in turbulent bedload transport: consequences for vertical flow structure and transport rate scaling

Gravity-driven turbulent bedload transport has been extensively studied over the past century in regard to its importance for Earth surface processes such as natural riverbed morphological evolution. In the present contribution, the influence of the longitudinal channel inclination angle on gravity-driven turbulent bedload transport is studied in an idealised framework considering steady and uniform flow conditions. From an analytical analysis based on the two-phase continuous equations, it is shown that : (i) the classical slope correction of the critical Shields number is based on an erroneous formulation of the buoyancy force, (ii) the influence of the slope is not restricted to the critical Shields number but affects the whole transport formula and (iii) pressure-driven and gravity-driven turbulent bedload transport are not equivalent from the slope influence standpoint. Analysing further the granular flow driving mechanisms, the longitudinal slope is shown to not only influence the fluid bed shear stress and the resistance of the granular bed, but also to affect the fluid flow inside the granular bed - responsible for the transition from bedload transport to debris flow. The relative influence of these coupled mechanisms allows us to understand the evolution of the vertical structure of the granular flow and to predict the transport rate scaling law as a function of a rescaled Shields number. The theoretical analysis is validated with coupled fluid-discrete element simulations of idealised gravity-driven turbulent bedload transport, performed over a wide range of Shields number values, density ratios and channel inclination angles. In particular, all the data are shown to collapse onto a master curve when considering the sediment transport rate as a function of the proposed rescaled Shields number
No Cosmological D=11 Supergravity

We show, in two complementary ways, that D=11 supergravity---in contrast to
all its lower dimensional versions---forbids a cosmological extension. First,
we linearize the putative model about an Anti de Sitter background and show
that it cannot even support a "global" supersymmetry invariance; hence there is
no Noether construction that can lead to a local supersymmetry. This is true
with the usual 4-form field as well as for a "dual", 7-form, starting point.
Second, a cohomology argument, starting from the original full nonlinear
theory, establishes the absence of deformations involving spin 3/2 mass and
cosmological terms. In both approaches, it is the form field that is
responsible for the obstruction. ``Dualizing'' the cosmological constant to an
11-form field also fails
Coalescing Cellular Automata

We say that a Cellular Automata (CA) is coalescing when its execution on two
distinct (random) initial configurations in the same asynchronous mode (the
same cells are updated in each configuration at each time step) makes both
configurations become identical after a reasonable time. We prove coalescence
for two elementary rules and show that there exists infinitely many coalescing
CA. We then conduct an experimental study on all elementary CA and show that
some rules exhibit a phase transition, which belongs to the universality class
of directed percolation
Dielectric properties of interacting storage ring plasmas

A dielectric function including collisional correlations is derived by
linearizing the self consistent Vlasov equation with a Fokker-Planck collision
integral. The calculation yields the same type of dielectric function as in the
standard-theory of Schottky-noise in storage rings. This dielectric function is
compared with the Mermin-dielectric function derived from a kinetic equation
with relaxation time approximation. We observe that these functions are
identical, however the Mermin-DF is computationally advantageous. The limits of
both dielectric functions are given and the sum rules are proven. We apply
these dielectric functions for typical storage ring plasmas and calculate the
stopping power and the plasmon excitation spectrum
Adaptation of machine translation for multilingual information retrieval in the medical domain

Objective. We investigate machine translation (MT) of user search queries in the context of cross-lingual information retrieval (IR) in the medical domain. The main focus is on techniques to adapt MT to increase translation quality; however, we also explore MT adaptation to improve eectiveness of cross-lingual IR.\ud
Methods and Data. Our MT system is Moses, a state-of-the-art phrase-based statistical machine translation system. The IR system is based on the BM25 retrieval model implemented in the Lucene search engine. The MT techniques employed in this work include in-domain training and tuning, intelligent training data selection, optimization of phrase table configuration, compound\ud
splitting, and exploiting synonyms as translation variants. The IR methods include morphological normalization and using multiple translation variants for query expansion. The experiments are performed and thoroughly evaluated on three language pairs: Czech–English, German–English, and French–English. MT quality is evaluated on data sets created within the Khresmoi project and IR eectiveness is tested on the CLEF eHealth 2013 data sets.\ud
Results. The search query translation results achieved in our experiments are outstanding – our systems outperform not only our strong baselines, but also Google Translate and Microsoft Bing Translator in direct comparison carried out on all the language pairs. The baseline BLEU scores increased from 26.59 to 41.45 for Czech–English, from 23.03 to 40.82 for German–English, and from 32.67 to 40.82 for French–English. This is a 55% improvement on average. In terms of the IR performance on this\ud
particular test collection, a significant improvement over the baseline is achieved only for French–English. For Czech–English and German–English, the increased MT quality does not lead to better IR results.\ud
Conclusions. Most of the MT techniques employed in our experiments improve MT of medical search queries. Especially the intelligent training data selection proves to be very successful for domain adaptation of MT. Certain improvements are also obtained from German compound splitting on the source language side. Translation quality, however, does not appear to correlate with the IR performance – better translation does not necessarily yield better retrieval. We discuss in detail the contribution of the individual techniques and state-of-the-art features and provide future research directions
Viscoelastic impact characterisation of solid sports balls used in the Irish sport of Hurling

In recent years, variability in behaviour of the sliotar, a small leather-bound ball used in the Irish sport of hurling, has become evident in championship matches. The inconsistency in performance was attributed to the range of constructions and material compositions of currently approved ball types. With a view to adopting a standard core, a new methodology has been commissioned to assess the dynamic impact behaviour of approved sliotar cores. In this paper, the relationship between the dynamic stiffness and the coefficient of restitution is presented with regard to material properties, ball construction and viscoelastic strain and strain-rate dependencies. The modern polymer ball types were shown to exhibit strain-rate sensitivity, while the performance of the traditional multi-compositional ball types exhibited lesser strain-rate dependence. The traditional balls types were shown to be up to 2.5 times stiffer than the modern ball types, with this finding having implications for ball energy dissipation
Solvation of fluoro-acetonitrile in water by 2D-IR spectroscopy: A combined experimental-computational study

The solvent dynamics around fluorinated acetonitrile is characterized by 2-dimensional infrared spectroscopy and atomistic simulations. The lineshape of the linear infrared spectrum is better captured by semiempirical (density functional tight binding) mixed quantum mechanical/molecular mechanics simulations, whereas force field simulations with multipolar interactions yield lineshapes that are significantly too narrow. For the solvent dynamics, a relatively slow time scale of 2 ps is found from the experiments and supported by the mixed quantum mechanical/molecular mechanics simulations. With multipolar force fields fitted to the available thermodynamical data, the time scale is considerably faster--on the 0.5 ps time scale. The simulations provide evidence for a well established CF-HOH hydrogen bond (population of 25%) which is found from the radial distribution function g(r) from both, force field and quantum mechanics/molecular mechanics simulations
An anti-establishment backlash that shook up the party system? The october 2015 Polish parliamentary election

The October 2015 Polish parliamentary election saw the stunning victory of the right-wing opposition Law and Justice party which became the first in post-communist Poland to secure an outright parliamentary majority, and equally comprehensive defeat of the incumbent centrist Civic Platform. In addition to the fact that the outgoing ruling party could no longer rely on invoking the ‘politics of fear’, the main factor accounting for this was widespread disillusionment with the country’s ruling elite. The election also saw the broad ‘post-transition’ socio-demographic and ideological divide and Law and Justice-Civic Platform duopoly continuing to dominate party competition. However, there were some indications of greater party system fluidity and question marks over who would emerge as the main representative of the anti-Law and Justice side of this divide
Long Term H-Release from Amorphous Carbon Evidenced by in Situ Raman Microscopy under Isothermal Heating

International audienceWe study the kinetics of the H release from plasma-deposited hydrogenated amorphous carbon films under isothermal heating at 450, 500 and 600 °C for long times up to several days using in situ Raman microscopy. Four Raman parameters are analyzed. They allow the identification of different processes such as the carbon network reorganization and the H release from sp3 or sp2 carbon atoms and the corresponding timescales. Carbon reorganization with aromatization and loss of sp3 hybridization occurs first in 100 minutes at 500 °C. The final organization is similar at all investigated temperatures. Full H release from sp3 carbon occurs on a longer timescale of about 10 hours while H release from sp2 carbon atoms is only partial, even after several days. All these processes occur more rapidly with higher initial H content, in agreement with what is known about the stability of these types of films. A quantitative analysis of these kinetics studies gives valuable information about the microscopic processes at the origin of the H release through the determination of activation energies
Mass loss from dusty, low outflow-velocity AGB stars. II. The multiple wind of EP Aquarii

Context: CO rotational lines are frequently used to trace the outflows from AGB stars. Some profiles are composite, with a narrow component super-imposed on a broader one. These profiles have been interpreted in different ways, calling for episodic mass loss, a bipolar flow, or a circumstellar disk. Aims: To investigate the structure of one of these outflows, we have obtained detailed 12CO(2-1) and 12CO(1-0) maps of EP Aqr, a prototypical source with composite CO profiles. Methods: Interferometric data were acquired with the IRAM interferometer and combined with on-the-fly maps obtained at the IRAM 30-m. The resulting maps in 12CO(2-1) and 12CO(1-0) cover a field of 100 arcsec × 100 arcsec with a spectral resolution of 0.1 km s-1 and with beams of 1.7 arcsec × 1.0 arcsec and 3.5 arcsec × 1.8 arcsec, respectively. Results: The source is clearly resolved with a size of about 15 arcsec (FWHM). We do not observe any obvious departure from circular symmetry, but there is evidence of a ringed structure in the CO(2-1) map with enhanced intensity at ~3.5 arcsec and 7.5 arcsec from the central star. The continuum level at 1.3 and 2.6 mm is consistent with the star's photospheric emission. We modeled the spatio-kinematic structure with Monte-Carlo radiative transfer simulations assuming spherical symmetry. We reached a reasonable fit to the map-integrated spectra, but not to the imaging data, possibly because the circumstellar shell of EP Aqr presents inhomogeneities on a scale that is not, or is only barely, resolved in our maps. EP Aqr may be a proto-typical oxygen-rich source for the class of theoretical models exhibiting mass loss variations on a ~100 yr timescale discovered by Winters et al. (2000), which show a layered structure in their extended circumstellar shells. Based on observations carried out with the IRAM Plateau de Bure Interferometer and the IRAM 30 m telescope on Pico Veleta. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain). Data files (in FITS format) of the data presented in Figs. 6 and 7 are available at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/cgi-bin/qcat?J/A+A/475/55
Study of laser induced plasma grating dynamics in gases

International audienceThe relaxation of a plasma grating resulting from the interference of two crossing laser filaments in molecular and atomic gases is studied experimentally. Dissipation of the grating fringes is dominated by ambipolar diffusion in atomic gases and by a combination of ambipolar diffusion and collision-assisted free electron recombination in molecular gases. A theoretical model of the grating evolution is developed and compared to experimental results. Good agreement with simulations allows extracting plasma properties such as electron density, diffusion and recombination coefficients in Ne, Ar, Kr, Xe, N_2 , O_2 , CO_2 and air at atmospheric pressure
Optimization of a city logistics transportation system with mixed passengers and goods

International audienceIn this paper, we propose a mathematical model and an adaptive large neighborhood search to solve a two{tiered transportation problem arising in the distribution of goods in congested city cores. In the rst tier, goods are transported in city buses from a consolidation and distribution center to a set of bus stops. The main idea is to use the buses spare capacity to drive the goods in the city core. In the second tier, nal customers are distributed by a eet of near{zero emissions city freighters. This system requires transferring the goods from buses to city freighters at the bus stops. We model the corresponding optimization problem as a variant of the pickup and delivery problem with transfers and solve it with an adaptive large neighborhood search. To evaluate its results, lower bounds are calculated with a column generation approach. The algorithm is assessed on data sets derived from a eld study in the medium-sized city of La Rochelle in France
Planck 2013 results. IV. Low Frequency Instrument beams and window functions

This paper presents the characterization of the in-flight beams, the beam window functions, and the associated uncertainties for the Planck Low Frequency Instrument (LFI). Knowledge of the beam profiles is necessary for determining the transfer function to go from the observed to the actual sky anisotropy power spectrum. The main beam distortions affect the beam window function, complicating the reconstruction of the anisotropy power spectrum at high multipoles, whereas the sidelobes affect the low and intermediate multipoles. The in-flight assessment of the LFI main beams relies on the measurements performed during Jupiter observations. By stacking the datafrom multiple Jupiter transits, the main beam profiles are measured down to -20 dB at 30 and 44 GHz, and down to -25 dB at 70 GHz. The main beam solid angles are determined to better than 0.2% at each LFI frequency band. The Planck pre-launch optical model is conveniently tuned to characterize the main beams independently of any noise effects. This approach provides an optical model whose beams fully reproduce the measurements in the main beam region, but also allows a description of the beams at power levels lower than can be achieved by the Jupiter measurements themselves. The agreement between the simulated beams and the measured beams is better than 1% at each LFI frequency band. The simulated beams are used for the computation of the window functions for the effective beams. The error budget for the window functions is estimated from both main beam and sidelobe contributions, and accounts for the radiometer bandshapes. The total uncertainties in the effective beam window functions are: 2% and 1.2% at 30 and 44 GHz, respectively (at l ≈ 600), and 0.7% at 70 GHz (at l ≈ 1000)
Multicenter analytical evaluation of the automated electrochemiluminescence immunoassay for cyclosporine

Background: Cyclosporine A (CsA) is used as a posttransplantation immunosuppressant drug, and careful monitoring of CsA concentration in whole blood is essential. A new automated electrochemiluminescence immunoassay (ECLIA) for CsA measurement has been assessed in a multicenter evaluation. 
Methods: Residual EDTA whole blood samples from patients undergoing CsA therapy after organ transplant were used in assay evaluation at 5 clinical laboratories in Europe. Experiments included imprecision according to CLSI EP5-A2 (within-run and intermediate), lower limit of quantification, linearity according to CLSI EP6A, and recovery of commercial external quality control samples. In addition, comparisons to liquid chromatography-tandem mass spectrometry methods in routine use at each investigational site and to commercial chemiluminescent microparticle immunoassay and antibody-conjugated magnetic immunoassay methods were performed. 
Results: Imprecision testing gave coefficients of variation of less than 9% in the 30-2000 mcg/L range for both within-run and intermediate imprecision. Lower limit of quantification of 6.8 mcg/L at one investigational site and 1.8 mcg/L at a second site at 20% coefficient of variation were observed. Linearity was measured over the concentration range 0-2000 mcg/L, yielding a deviation of less than +/- 12%. External quality control sample recovery by ECLIA was 93%-114% of LC-MS/MS sample recovery. Deming regression analysis of ECLIA method comparison to combined LC-MS/MS results yielded a slope of 1.04 [95% confidence interval (CI), 1.03-1.06] and intercept of 2.8 mcg/L (95% CI, 1.5-4.1 mcg/L). Comparison to chemiluminescent microparticle immunoassay yielded a slope of 0.87 (95% CI, 0.85-0.89) and intercept of 1.4 mcg/L (95% CI, -0.89 to 3.7 mcg/L); comparison to antibody-conjugated magnetic immunoassay yielded a slope of 0.96 (95% CI, 0.93-0.98) and intercept of 24.2 mcg/L (95% CI, -7.1 to -1.2 mcg/L). 
Conclusions: The data from this multicenter evaluation indicate that the new ECLIA-based cyclosporine assay is fit for its purpose, the therapeutic monitoring of CsA