Patent Document ID: 9563741
Application ID: 14280285

Base Claim:
1. A method comprising: automatically extracting a plurality of assertions from a plurality of publications, wherein each of the plurality of assertions encodes a relationship between a subject and an object; manually editing the plurality of assertions automatically extracted from the plurality of publications to construct a custom knowledgebase for a particular biological field; and constructing a sequence dataset comprising a plurality of called biological sequences, wherein each of the plurality of called biological sequences is associated with one or more of the plurality of assertions of the custom knowledgebase, wherein constructing the sequence dataset comprises: automatically extracting one or more called biological sequences from the plurality of publications; extracting additional called biological sequences from one or more publicly available databases; grouping the additional called biological sequences with the one or more called biological sequences automatically extracted from the plurality of publications in response to one or more predetermined resemblance criteria being met; and associating each group of called biological sequences with one or more of the plurality of assertions of the custom knowledgebase.

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Claim 8:
8. The method of claim 1 , wherein the plurality of called biological sequences included in the sequence dataset and the associations between the plurality of called biological sequences and the plurality of assertions of the custom knowledgebase are manually edited by the subject matter experts.