Title: Modality-free Graph In-context Alignment
Primary area: learning on graphs and other geometries & topologies
Keywords: Graph neural networks, In-context learning, Pretraining

Abstract: In-context learning (ICL) converts static encoders into task-conditioned reasoners, enabling adaptation to new data from just a few examples without updating pretrained parameters. This capability is essential for graph foundation models (GFMs) to approach LLM-level generality. Yet current GFMs struggle with cross-domain alignment, typically relying on modality-specific encoders that fail when graphs are pre-vectorized or raw data is inaccessible. In this paper, we introduce **M**odality-**F**ree **G**raph **I**n-context **A**lignment (MF-GIA), a framework that makes a pretrained graph encoder promptable for few-shot prediction across heterogeneous domains without modality assumptions. MF-GIA captures domain characteristics through gradient fingerprints, which parameterize lightweight transformations that align pre-encoded features and indexed labels into unified semantic spaces. During pretraining, a dual prompt-aware attention mechanism with episodic objective learns to match queries against aligned support examples to establish prompt-based reasoning capabilities. At inference, MF-GIA performs gradient-free adaptation using only a few-shot support set to trigger cross-domain alignment and enable immediate prediction on unseen domains. Experiments demonstrate that MF-GIA achieves superior few-shot performance across diverse graph domains and strong generalization to unseen domains. The code is anonymously available [here](https://anonymous.4open.science/r/MF-GIA-submit-3212).

TL;DR: A GNN pretraining framework that enables in-context learning on graph-structured data without modality assumptions.