diff --git a/outputs/PROSTATE_1.nii.gz b/outputs/PROSTATE_1.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..f4794c5821bb0ac3cc555be5ea2f39e30d2749e9 --- /dev/null +++ b/outputs/PROSTATE_1.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:14466eca9566fbf9bde3f67beb2923eca3fb1c9a4f2a71fd910d56bbb3bb5bed +size 5981 diff --git a/outputs/PROSTATE_1.npz b/outputs/PROSTATE_1.npz new file mode 100644 index 0000000000000000000000000000000000000000..7708834e319cdf8818479d04e4a8901076df3aca --- /dev/null +++ b/outputs/PROSTATE_1.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:522402ba204f6d07b1b1b252edbc1b39621555e4b2615af04feb06387f19b298 +size 10918694 diff --git a/outputs/PROSTATE_1.pkl b/outputs/PROSTATE_1.pkl new file mode 100644 index 0000000000000000000000000000000000000000..3f852cf06f6f3367534cabc4192a95bafa42102f --- /dev/null +++ b/outputs/PROSTATE_1.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:42a46a8a26e421dd5260032a7971d432654e56d9c79674c79fa9c1e7ababb49f +size 492 diff --git a/outputs/PROSTATE_10.nii.gz b/outputs/PROSTATE_10.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..236e31c0ab00a629d6d46c927410d8f16e9bbbf2 --- /dev/null +++ b/outputs/PROSTATE_10.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5f6ac02c9ce6cf2888e89f422bf5319d6db787146350ed0d18c7569b0050a1a0 +size 8079 diff --git a/outputs/PROSTATE_10.npz b/outputs/PROSTATE_10.npz new file mode 100644 index 0000000000000000000000000000000000000000..d5058103a88aa0feca2fad9d6b0e0f280e470aa1 --- /dev/null +++ b/outputs/PROSTATE_10.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b3f68baaad56328e5a4af704a8456d7a25778dd9c4e36e6476d2ecf114c6448 +size 11936467 diff --git a/outputs/PROSTATE_10.pkl b/outputs/PROSTATE_10.pkl new file mode 100644 index 0000000000000000000000000000000000000000..45a31f1b9ed81ede4906fa7b48d2d32a9ed00fe7 --- /dev/null +++ b/outputs/PROSTATE_10.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8baa4363ddca9e2e80a9f5c738c04553ceb76a91908bc21b2b7c5d6dda535210 +size 492 diff --git a/outputs/PROSTATE_11.nii.gz b/outputs/PROSTATE_11.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..7b1ea3169a20b837eb21efc2f72b4f39873a9ef8 --- /dev/null +++ b/outputs/PROSTATE_11.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f406a9c68357b9a62f16139a219efc587e8ad4975f030c33ab2d132dccbca2fd +size 5924 diff --git a/outputs/PROSTATE_11.npz b/outputs/PROSTATE_11.npz new file mode 100644 index 0000000000000000000000000000000000000000..5f58af45672db457145863356c7376ff551a89d5 --- /dev/null +++ b/outputs/PROSTATE_11.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:df640971ccd8b0507ba38d403c24b9a512bebb587b681cdef6ed5d273c30e96d +size 13157908 diff --git a/outputs/PROSTATE_11.pkl b/outputs/PROSTATE_11.pkl new file mode 100644 index 0000000000000000000000000000000000000000..3d784dbc0a01c257779950c07e95c2c79ab54e40 --- /dev/null +++ b/outputs/PROSTATE_11.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:799f9ff4c8e438de9ec9333a17f89cc684d7e7c146f9902aac50fca4be170fed +size 492 diff --git a/outputs/PROSTATE_12.nii.gz b/outputs/PROSTATE_12.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..462a5a150f852ef9dacd7ef8570fd7819b18b8dd --- /dev/null +++ b/outputs/PROSTATE_12.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a4d75d4d2981b4a6e9ab52e57aaf7135705493d689d7d81e99fd26f8a73fc1c0 +size 5897 diff --git a/outputs/PROSTATE_12.npz b/outputs/PROSTATE_12.npz new file mode 100644 index 0000000000000000000000000000000000000000..c3338059921210f636f674aa9c0641c3dcda1c0f --- /dev/null +++ b/outputs/PROSTATE_12.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d387ba4bb9b0fe57fd45782b45505675c6dc66d7be41d11094c5e575ee1832fd +size 10877580 diff --git a/outputs/PROSTATE_12.pkl b/outputs/PROSTATE_12.pkl new file mode 100644 index 0000000000000000000000000000000000000000..fdb8372d697c01284e5f176b4ba0182ff3242886 --- /dev/null +++ b/outputs/PROSTATE_12.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41be57c80eeaf703985b97cbf3854ba0ea48672135b21a76a90077c25830fbfd +size 492 diff --git a/outputs/PROSTATE_13.nii.gz b/outputs/PROSTATE_13.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..5f3daa9675759fe6bb1b8c130c6212a32d8f46b2 --- /dev/null +++ b/outputs/PROSTATE_13.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87226d13ca8a60f59116779a7595a2350120f9447331b6a2e6a6e30d5428226a +size 4574 diff --git a/outputs/PROSTATE_13.npz b/outputs/PROSTATE_13.npz new file mode 100644 index 0000000000000000000000000000000000000000..1f6df31e0b80d5bbe47908599a9d7b2c34d03918 --- /dev/null +++ b/outputs/PROSTATE_13.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b517fbefe6bd757ce3dfc9bb17d459e224eb10ebc255fc14e401bdf146c8e55 +size 10823272 diff --git a/outputs/PROSTATE_13.pkl b/outputs/PROSTATE_13.pkl new file mode 100644 index 0000000000000000000000000000000000000000..d4aefd4dba71e611ab0d61e03a645f438f980847 --- /dev/null +++ b/outputs/PROSTATE_13.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea8221f9004e779e6733c873f5af7eee97f1b0225623be4d87a96a0b1df4e2a7 +size 492 diff --git a/outputs/PROSTATE_14.nii.gz b/outputs/PROSTATE_14.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..163b92bede152edce591d5d696279ce9e6c59a1b --- /dev/null +++ b/outputs/PROSTATE_14.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e217ab47674b1266e3f289c847467e09d9539eb477dcbe65e03e1155d4bad755 +size 5468 diff --git a/outputs/PROSTATE_14.npz b/outputs/PROSTATE_14.npz new file mode 100644 index 0000000000000000000000000000000000000000..8df79943e5146bcb71bda877426c0f7ebd2fb337 --- /dev/null +++ b/outputs/PROSTATE_14.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:92db4a28f9eb1c41e54a09fc4c4eb3636672315ead955e3aff71f1863251cf62 +size 13173054 diff --git a/outputs/PROSTATE_14.pkl b/outputs/PROSTATE_14.pkl new file mode 100644 index 0000000000000000000000000000000000000000..4b1d5bafd1fd76eca61181507075950bf286a18e --- /dev/null +++ b/outputs/PROSTATE_14.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d52a6b22b204888c3029856aa66236e83a561857eda243376e26463ec4cf19ed +size 492 diff --git a/outputs/PROSTATE_15.nii.gz b/outputs/PROSTATE_15.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..06333db60491d454ffcd54d39782884bbf529d2f --- /dev/null +++ b/outputs/PROSTATE_15.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7df3754ef303a88f100711f2680ad777ec9141745f1b9d3f377b7b8f50212df6 +size 4944 diff --git a/outputs/PROSTATE_15.npz b/outputs/PROSTATE_15.npz new file mode 100644 index 0000000000000000000000000000000000000000..ac44a7202b4688c9f99f8fb2f381febbcd4ffc59 --- /dev/null +++ b/outputs/PROSTATE_15.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c3794c950386e06a8a9817a94a58914134fa919d2792f27ab09f085edb78d3bc +size 10733335 diff --git a/outputs/PROSTATE_15.pkl b/outputs/PROSTATE_15.pkl new file mode 100644 index 0000000000000000000000000000000000000000..8c5a090ba33881b2f3330a9995b4f950dff5c1aa --- /dev/null +++ b/outputs/PROSTATE_15.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd04d56898fe9e448f7885181c04304079bc2a2aee61c6135062b81a08d8b0a4 +size 492 diff --git a/outputs/PROSTATE_16.nii.gz b/outputs/PROSTATE_16.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..4f4260c1e33a1259e09c3d393805ed7c355b17b0 --- /dev/null +++ b/outputs/PROSTATE_16.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e4217a0723ef97d83b8b52fa1c22084035b124ae8750d90f745db77fa6f6957 +size 4750 diff --git a/outputs/PROSTATE_16.npz b/outputs/PROSTATE_16.npz new file mode 100644 index 0000000000000000000000000000000000000000..c0ca3c1f99b6371a0bedffa19a78f05482416974 --- /dev/null +++ b/outputs/PROSTATE_16.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c27c3f830f7414a4222e4ccdd5a60d09df02b5336b9870713beab4aa92aca144 +size 11772630 diff --git a/outputs/PROSTATE_16.pkl b/outputs/PROSTATE_16.pkl new file mode 100644 index 0000000000000000000000000000000000000000..821dde11cecdad86c5b92dfad2cb90ad32f13c7e --- /dev/null +++ b/outputs/PROSTATE_16.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e5b0effdf48a0d6c5d60b414199a45540eccaa22349a5701108d19d9cd3436d0 +size 492 diff --git a/outputs/PROSTATE_17.nii.gz b/outputs/PROSTATE_17.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..d015cfd0786e59c792fda0b783f6e3824c50bc7a --- /dev/null +++ b/outputs/PROSTATE_17.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c6eeeec5d144afc9063aa7ba0f35a267f910b4d753ec2a0002c73ceb8521779d +size 5319 diff --git a/outputs/PROSTATE_17.npz b/outputs/PROSTATE_17.npz new file mode 100644 index 0000000000000000000000000000000000000000..64f5c8354429a098bfc95c48228bb7f7af0b7d54 --- /dev/null +++ b/outputs/PROSTATE_17.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:601f7bbbd505e447edaf2cc1d6ddba00279cce8bd564b746737843f9612620ee +size 11808648 diff --git a/outputs/PROSTATE_17.pkl b/outputs/PROSTATE_17.pkl new file mode 100644 index 0000000000000000000000000000000000000000..b8f1bbda8fbac3fb95c49e1178ca2bbe8f5de4bd --- /dev/null +++ b/outputs/PROSTATE_17.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8fc96336727e691b2dc24613de970f9dbfd797cb2a57e3d3b58c0960cbad71d2 +size 492 diff --git a/outputs/PROSTATE_18.nii.gz b/outputs/PROSTATE_18.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..375d9a7c8645fe16e07e434605e19da180f46d8d --- /dev/null +++ b/outputs/PROSTATE_18.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87e0ade673948eac3afc34a5b9c01408b18da036f7903dcf2337e0e16c53176d +size 6360 diff --git a/outputs/PROSTATE_18.npz b/outputs/PROSTATE_18.npz new file mode 100644 index 0000000000000000000000000000000000000000..28ba1142b22ccae5e5b7168ab8d78213ac8c9c2c --- /dev/null +++ b/outputs/PROSTATE_18.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67728947889572da298c92368a4ddfb715fce791a290220c89cbc3c1461f1210 +size 12425422 diff --git a/outputs/PROSTATE_18.pkl b/outputs/PROSTATE_18.pkl new file mode 100644 index 0000000000000000000000000000000000000000..af8de21633c91e69f45cae2540b07ae8e98405c8 --- /dev/null +++ b/outputs/PROSTATE_18.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c996613d187c30d767c219bc402429a2a6126dee56d3a82a725e2a56e146f031 +size 492 diff --git a/outputs/PROSTATE_19.nii.gz b/outputs/PROSTATE_19.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..b8e0c5efbfc43a0490f459bd6a3fdcc6face8572 --- /dev/null +++ b/outputs/PROSTATE_19.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:63762d01ad37b281b69765be91fd753380d9fea84138d7789fa1a3b0645ad92c +size 5602 diff --git a/outputs/PROSTATE_19.npz b/outputs/PROSTATE_19.npz new file mode 100644 index 0000000000000000000000000000000000000000..225b86fd1a3ac12c2c82f80f0bed54e7912ebb31 --- /dev/null +++ b/outputs/PROSTATE_19.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4606c4d978a829f1ffd4610696e6d7ad2c9f6241c8f596225bd60b6086974a97 +size 11813298 diff --git a/outputs/PROSTATE_19.pkl b/outputs/PROSTATE_19.pkl new file mode 100644 index 0000000000000000000000000000000000000000..7caad28df8f1f93607ab11887c59c6077ecfde46 --- /dev/null +++ b/outputs/PROSTATE_19.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:da53bd393f2e537043986372b3cf5e1b284378afc50163706d3e7070438b075d +size 492 diff --git a/outputs/PROSTATE_2.nii.gz b/outputs/PROSTATE_2.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..2c5481fcde81c3d10ef953c0c5926e3508a5ae1a --- /dev/null +++ b/outputs/PROSTATE_2.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f55627c73e84342a8055fe8774d7c76a7e789bda75c5debbad81c71995e7e9b6 +size 5531 diff --git a/outputs/PROSTATE_2.npz b/outputs/PROSTATE_2.npz new file mode 100644 index 0000000000000000000000000000000000000000..1a2b93343c8307533b4a6aed2e043c5956c1efc0 --- /dev/null +++ b/outputs/PROSTATE_2.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f8723a866f102509d498d5c8c1176b51c7b0c58b1c74223301e06dc9c2fdd20 +size 10758880 diff --git a/outputs/PROSTATE_2.pkl b/outputs/PROSTATE_2.pkl new file mode 100644 index 0000000000000000000000000000000000000000..e16aef8a2a7718850d79276f2e329b249d25df0e --- /dev/null +++ b/outputs/PROSTATE_2.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88d4c73157035df94149176b380f9e7bbc1361399683fcae82638bff18fd89f3 +size 492 diff --git a/outputs/PROSTATE_3.nii.gz b/outputs/PROSTATE_3.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..303c9bb595c4821e4b241e67d2f1a5321e6e1e25 --- /dev/null +++ b/outputs/PROSTATE_3.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c9dc5fd173e6c2cd93fce74f8c1c1664248d6a24e513084605389422258638c2 +size 7194 diff --git a/outputs/PROSTATE_3.npz b/outputs/PROSTATE_3.npz new file mode 100644 index 0000000000000000000000000000000000000000..b5c5049ac2620f2fec99604f40b5d56a1fed948b --- /dev/null +++ b/outputs/PROSTATE_3.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:da9af5e9f9fbb5300e138f335125e032cb28c147a33bd0499860be2c37af6293 +size 11004679 diff --git a/outputs/PROSTATE_3.pkl b/outputs/PROSTATE_3.pkl new file mode 100644 index 0000000000000000000000000000000000000000..4eb2787415d0486bbdfe5334df9f40463b235ee8 --- /dev/null +++ b/outputs/PROSTATE_3.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:97772bdc6510c119dbf380a59b78f8c9fa7553d38fe4122e9a12471de503d317 +size 492 diff --git a/outputs/PROSTATE_4.nii.gz b/outputs/PROSTATE_4.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..8f4ca952a3b7f6762feeddee3beb15e36fc0aa7d --- /dev/null +++ b/outputs/PROSTATE_4.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b7984a6620c5b5565c7b3e36f3794d50cb9458fc2688cb7e0622176a7b8c55a +size 4990 diff --git a/outputs/PROSTATE_4.npz b/outputs/PROSTATE_4.npz new file mode 100644 index 0000000000000000000000000000000000000000..30fd961b821521d37da2cab9a42442de8f48b5f9 --- /dev/null +++ b/outputs/PROSTATE_4.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:366239e95ba406ed30b37d19d7831e89a64c6cf2d7b2999310726b7dffc1d99d +size 11765364 diff --git a/outputs/PROSTATE_4.pkl b/outputs/PROSTATE_4.pkl new file mode 100644 index 0000000000000000000000000000000000000000..698fdd63f4b81ad9021bd716f0a90bad153c0199 --- /dev/null +++ b/outputs/PROSTATE_4.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfff7f6d5c7d67927e3fbdfcb12ed432287fcf4f423745e5ddf476c981ff7eb9 +size 492 diff --git a/outputs/PROSTATE_5.nii.gz b/outputs/PROSTATE_5.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..bce140e02531a8ff73786699caef7e8e5f945608 --- /dev/null +++ b/outputs/PROSTATE_5.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:449f0bb56caa11c4883c72e4bc368498e6b8fb1b5da9ffc287d05f2dd93b0435 +size 7029 diff --git a/outputs/PROSTATE_5.npz b/outputs/PROSTATE_5.npz new file mode 100644 index 0000000000000000000000000000000000000000..4d6ad99a8b2aec7f2265de35df12bddb00b494d0 --- /dev/null +++ b/outputs/PROSTATE_5.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0cb5a4961f4d5f8fe6401c168098b566a492a460b474cb88cab1b64bd2fb2cac +size 12646768 diff --git a/outputs/PROSTATE_5.pkl b/outputs/PROSTATE_5.pkl new file mode 100644 index 0000000000000000000000000000000000000000..91766954a51646b77d76beaa1668ac4e83c59c75 --- /dev/null +++ b/outputs/PROSTATE_5.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d7aa281abf87d9b25f479270121e8c82b1154280d469af6db5fbe3a6a4cc8011 +size 492 diff --git a/outputs/PROSTATE_6.nii.gz b/outputs/PROSTATE_6.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..242e71b3e64654be8fbd64990f2b2b7d76534db2 --- /dev/null +++ b/outputs/PROSTATE_6.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93b6ef65c9664cbc221e57d85c6d2f2f36544bf1e27230afd080ab0ccd52c525 +size 5573 diff --git a/outputs/PROSTATE_6.npz b/outputs/PROSTATE_6.npz new file mode 100644 index 0000000000000000000000000000000000000000..1ea8275b7f305280aa09cae5b39652eaf4493e37 --- /dev/null +++ b/outputs/PROSTATE_6.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3913d676772a02dd0bdb9eaf99f3de950f807b8b1e0498d7341fc14824383d6b +size 11876482 diff --git a/outputs/PROSTATE_6.pkl b/outputs/PROSTATE_6.pkl new file mode 100644 index 0000000000000000000000000000000000000000..9b2f0bac8a771d962ffd9fdca8eb4bd795570170 --- /dev/null +++ b/outputs/PROSTATE_6.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a0830b4b7cc216c35e2ffad0c946be11a89ffb9e35150e389fea4a2336b9003 +size 492 diff --git a/outputs/PROSTATE_7.nii.gz b/outputs/PROSTATE_7.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..4345d6356399fe3e3729cc18e38c186d94c035db --- /dev/null +++ b/outputs/PROSTATE_7.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3d2262e760f8d9e054d12f641367bbfc11058cff329f0a31939472954a90385c +size 5924 diff --git a/outputs/PROSTATE_7.npz b/outputs/PROSTATE_7.npz new file mode 100644 index 0000000000000000000000000000000000000000..a0dae7bc15931a184a60cdd8e85c06dc86535312 --- /dev/null +++ b/outputs/PROSTATE_7.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b94b509aff945eeb0bb57687316eea2111630b3cea4bc3fa4f43bb9162e933ff +size 13703494 diff --git a/outputs/PROSTATE_7.pkl b/outputs/PROSTATE_7.pkl new file mode 100644 index 0000000000000000000000000000000000000000..a0c97148050f84c51d252462d02f004aba52263f --- /dev/null +++ b/outputs/PROSTATE_7.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9fc2638f845fe46b098a0bc93236644458fff8399408a564f10d63c6931ee391 +size 492 diff --git a/outputs/PROSTATE_8.nii.gz b/outputs/PROSTATE_8.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..c5d7ba556da02dbefa1c335e27996bd30d959f03 --- /dev/null +++ b/outputs/PROSTATE_8.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:14bacf0776f32617dfcb32fca36e6f566b0d5277bb5cfc4fe481b0122921a83e +size 5102 diff --git a/outputs/PROSTATE_8.npz b/outputs/PROSTATE_8.npz new file mode 100644 index 0000000000000000000000000000000000000000..3e698ed9b05e7632ea170dbbfbf9b7548085458f --- /dev/null +++ b/outputs/PROSTATE_8.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:947cb7ad4fa500cfc2744cbc9582b65d925cf0aeb0e4d898701a2fd5da507440 +size 11800199 diff --git a/outputs/PROSTATE_8.pkl b/outputs/PROSTATE_8.pkl new file mode 100644 index 0000000000000000000000000000000000000000..5f49a22f2c3b4203ae961e5da5200c76bef9f50f --- /dev/null +++ b/outputs/PROSTATE_8.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0da40139a78e22ec0ef9c92ea5d102fc71652b1d4385d20691e114e7bd5b8cfb +size 492 diff --git a/outputs/PROSTATE_9.nii.gz b/outputs/PROSTATE_9.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..814610f030d20ca2f66c75cd72c8818ee4178053 --- /dev/null +++ b/outputs/PROSTATE_9.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13f9c4adf0f9600d0ea3e8c91efd57c5fb740a7c0a1c9d1976feca2f7c56c1c2 +size 4433 diff --git a/outputs/PROSTATE_9.npz b/outputs/PROSTATE_9.npz new file mode 100644 index 0000000000000000000000000000000000000000..d0b3fcf969b7081bc3e12f533276e15312f9a2d5 --- /dev/null +++ b/outputs/PROSTATE_9.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d2041c482bfa9216545bcb0fe4fc27dab814a4ff4e7e96f69b8f3f46492ef6e1 +size 11836037 diff --git a/outputs/PROSTATE_9.pkl b/outputs/PROSTATE_9.pkl new file mode 100644 index 0000000000000000000000000000000000000000..2680f11ac20a0e4f9ad8a0c9d2c0724563cdd1ea --- /dev/null +++ b/outputs/PROSTATE_9.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72b7466f547c16254eb4b04001e4a6e3ebffd85dd97f05367f8abf880efafd82 +size 492 diff --git a/outputs/dataset.json b/outputs/dataset.json new file mode 100644 index 0000000000000000000000000000000000000000..dff68bebed10de248bbc6ac1451469d3e7e80d1b --- /dev/null +++ b/outputs/dataset.json @@ -0,0 +1,15 @@ +{ + "name": "Prostate158", + "description": "Prostate cancer segmentation dataset", + "channel_names": { + "0": "T2" + }, + "labels": { + "background": 0, + "prostate_inner": 1, + "prostate_outer": 2 + }, + "numTraining": 139, + "numTest": 19, + "file_ending": ".nii.gz" +} \ No newline at end of file diff --git a/outputs/plans.json b/outputs/plans.json new file mode 100644 index 0000000000000000000000000000000000000000..e459a154bcdc2f3f6fa1ec5f1f71dd3e25c43ca9 --- /dev/null +++ b/outputs/plans.json @@ -0,0 +1,316 @@ +{ + "dataset_name": "Dataset001_Prostate158", + "plans_name": "nnUNetPlans", + "original_median_spacing_after_transp": [ + 3.0, + 0.4017857015132904, + 0.4017857015132904 + ], + "original_median_shape_after_transp": [ + 25, + 270, + 270 + ], + "image_reader_writer": "SimpleITKIO", + "transpose_forward": [ + 0, + 1, + 2 + ], + "transpose_backward": [ + 0, + 1, + 2 + ], + "configurations": { + "2d": { + "data_identifier": "nnUNetPlans_2d", + "preprocessor_name": "DefaultPreprocessor", + "batch_size": 32, + "patch_size": [ + 320, + 320 + ], + "median_image_size_in_voxels": [ + 270.0, + 270.0 + ], + "spacing": [ + 0.4017857015132904, + 0.4017857015132904 + ], + "normalization_schemes": [ + "ZScoreNormalization" + ], + "use_mask_for_norm": [ + false + ], + "UNet_class_name": "PlainConvUNet", + "UNet_base_num_features": 32, + "n_conv_per_stage_encoder": [ + 2, + 2, + 2, + 2, + 2, + 2, + 2 + ], + "n_conv_per_stage_decoder": [ + 2, + 2, + 2, + 2, + 2, + 2 + ], + "num_pool_per_axis": [ + 6, + 6 + ], + "pool_op_kernel_sizes": [ + [ + 1, + 1 + ], + [ + 2, + 2 + ], + [ + 2, + 2 + ], + [ + 2, + 2 + ], + [ + 2, + 2 + ], + [ + 2, + 2 + ], + [ + 2, + 2 + ] + ], + "conv_kernel_sizes": [ + [ + 3, + 3 + ], + [ + 3, + 3 + ], + [ + 3, + 3 + ], + [ + 3, + 3 + ], + [ + 3, + 3 + ], + [ + 3, + 3 + ], + [ + 3, + 3 + ] + ], + "unet_max_num_features": 512, + "resampling_fn_data": "resample_data_or_seg_to_shape", + "resampling_fn_seg": "resample_data_or_seg_to_shape", + "resampling_fn_data_kwargs": { + "is_seg": false, + "order": 3, + "order_z": 0, + "force_separate_z": null + }, + "resampling_fn_seg_kwargs": { + "is_seg": true, + "order": 1, + "order_z": 0, + "force_separate_z": null + }, + "resampling_fn_probabilities": "resample_data_or_seg_to_shape", + "resampling_fn_probabilities_kwargs": { + "is_seg": false, + "order": 1, + "order_z": 0, + "force_separate_z": null + }, + "batch_dice": true + }, + "3d_fullres": { + "data_identifier": "nnUNetPlans_3d_fullres", + "preprocessor_name": "DefaultPreprocessor", + "batch_size": 2, + "patch_size": [ + 28, + 256, + 256 + ], + "median_image_size_in_voxels": [ + 25.0, + 270.0, + 270.0 + ], + "spacing": [ + 2.999998998641968, + 0.4017857015132904, + 0.4017857015132904 + ], + "normalization_schemes": [ + "ZScoreNormalization" + ], + "use_mask_for_norm": [ + false + ], + "UNet_class_name": "PlainConvUNet", + "UNet_base_num_features": 32, + "n_conv_per_stage_encoder": [ + 2, + 2, + 2, + 2, + 2, + 2, + 2 + ], + "n_conv_per_stage_decoder": [ + 2, + 2, + 2, + 2, + 2, + 2 + ], + "num_pool_per_axis": [ + 2, + 6, + 6 + ], + "pool_op_kernel_sizes": [ + [ + 1, + 1, + 1 + ], + [ + 1, + 2, + 2 + ], + [ + 1, + 2, + 2 + ], + [ + 2, + 2, + 2 + ], + [ + 2, + 2, + 2 + ], + [ + 1, + 2, + 2 + ], + [ + 1, + 2, + 2 + ] + ], + "conv_kernel_sizes": [ + [ + 1, + 3, + 3 + ], + [ + 1, + 3, + 3 + ], + [ + 3, + 3, + 3 + ], + [ + 3, + 3, + 3 + ], + [ + 3, + 3, + 3 + ], + [ + 3, + 3, + 3 + ], + [ + 3, + 3, + 3 + ] + ], + "unet_max_num_features": 320, + "resampling_fn_data": "resample_data_or_seg_to_shape", + "resampling_fn_seg": "resample_data_or_seg_to_shape", + "resampling_fn_data_kwargs": { + "is_seg": false, + "order": 3, + "order_z": 0, + "force_separate_z": null + }, + "resampling_fn_seg_kwargs": { + "is_seg": true, + "order": 1, + "order_z": 0, + "force_separate_z": null + }, + "resampling_fn_probabilities": "resample_data_or_seg_to_shape", + "resampling_fn_probabilities_kwargs": { + "is_seg": false, + "order": 1, + "order_z": 0, + "force_separate_z": null + }, + "batch_dice": false + } + }, + "experiment_planner_used": "ExperimentPlanner", + "label_manager": "LabelManager", + "foreground_intensity_properties_per_channel": { + "0": { + "max": 1694.0, + "mean": 267.5592956542969, + "median": 242.0, + "min": 0.0, + "percentile_00_5": 37.0, + "percentile_99_5": 768.0, + "std": 136.02105712890625 + } + } +} \ No newline at end of file diff --git a/outputs/predict_from_raw_data_args.json b/outputs/predict_from_raw_data_args.json new file mode 100644 index 0000000000000000000000000000000000000000..6affd1fbaf8eeb565eb26437961978833fa09e2e --- /dev/null +++ b/outputs/predict_from_raw_data_args.json @@ -0,0 +1,22 @@ +{ + "checkpoint_name": "checkpoint_final.pth", + "device": "cuda:0", + "folder_with_segs_from_prev_stage": null, + "list_of_lists_or_source_folder": "nnUNet_raw/Dataset001_Prostate158/imagesTs", + "model_training_output_dir": "nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres", + "num_parts": 1, + "num_processes_preprocessing": 3, + "num_processes_segmentation_export": 3, + "output_folder": "outputs", + "overwrite": true, + "part_id": 0, + "perform_everything_on_gpu": true, + "save_probabilities": true, + "tile_step_size": 0.5, + "use_folds": [ + 0 + ], + "use_gaussian": true, + "use_mirroring": true, + "verbose": false +} \ No newline at end of file