#### Atlas of Genetics and Cytogenetics in Oncology and Haematology

## ENTITIES: by Chromosome band

## Chromosome 15

  


## Arm 15p

## chr15:0-19000000 (19000 Kb)

## Chromosomal abnormalities in band 15p

## References

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.   
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz
  * ISCN Abbreviated Terms and Symbols [NCI]
  * [A]Atlas - Annotated genes 
  * [G]Atlas - Other Genes 
  * [F] fishClones (hg38) 
  * [M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ CGAP Jul 2019]   
and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016] 
  * [N] Mitelman Database of Chromosome Aberrations (/number)
  * [COS] Catalogue Of Somatic Mutations In Cancer [v90]
  * [COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v90] [PubMed 2017]
  * [CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v90]) [PubMed 2014]
  * [CEN] Cancer Gene Census [v90]
  * [TF] [PubMed 2014]TCGA Fusions (MDAndersson) TCGA Fusions (Jackson Lab) [PubMed 2014] (the fusions are limited to tiers 1 and 2) 
  * [TIC] [PubMed 2007] TicDB
  * [H2] [PubMed 2006] ChimerDB_2.0
  * [H3] [PubMed 2010] [PubMed 2017] ChimerDB_3.0 [PubMed 2017]
  * [K] [PubMed 2011] dbCRID
  * [CT] [PubMed 2011] [PubMed 2012] [PubMed 2014] ChiTARS-2.1 [PubMed 2016] ChiTARS-3.1
  * [LAI] [PubMed 2015] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015
  * [PM] Gene Fusions from Pubmed abstract mining
  * [L] [PubMed 2011] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57. 
  * [S] [PubMed 21009] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.
  * [V][PubMed 2012] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12. 
  * [GT] [Pubmed 2015] Cell Lines (Genentech) Nature Biotech Suppl.Table8
  * [FC] [PubMed 2015] Fusion cancer (Beijing) (the fusions are limited to class A and B) 
  * [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3) 
  * [URK] [PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62. 
  * [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220. 
  * [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
  * [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
  * [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2
  * [MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7
  * [GDB] [PubMed 2019] Fusion gene annotation DataBase. Kim P t Zhou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D994-D1004 [site FusionGDB]
  * [DDR][DDG]  [PubMed 2019] Improved detection of gene fusions by applying statistical methods reveals oncogenic RNA cancer drivers, Dehghannasiri R et al, Proc Natl Acad Sci U S A. 2019 Jul 15. pii: 201900391. doi: 10.1073/pnas.1900391116  

  * [DDR] TGCA novel recurrent fusions - Sup. Table 1  

  * [DDG] GTEx (normal tissus) recurrent fusions - Sup. Table 1