Evolution

showing the three domains of life on Earth]]

**Evolution** is a biological process. It is how living things change over time and how new species develop. The theory of evolution explains how evolution works, and how living and extinct things have come to be the way they are. 

The theory of evolution is an essential idea in biology. Theodosius Dobzhansky, a well-known evolutionary biologist, said: "Nothing in biology makes sense except in the light of evolution".

Evolution has been happening since life started on Earth and is happening now. Evolution is caused mostly by natural selection. Living things are not identical to each other. Even living things of the same species look, move, and behave differently to some extent. Some differences make it easier for living things to survive and reproduce. 

Differences may make it easier to find food, hide from danger, or give birth to offspring which survive. The offspring will have some of the things which made it easier for their parents to have and raise them. Over time, these good differences continue and are spread through the population. Many generations pass and living things change enough to become new species.

Individuals who have differences that make it harder to find food, have offspring or avoid being eaten are likely not to have offspring at all and so will not be parents of future generations.

It is known that living things have changed over time, because their  can be seen in the rocks.  These remains are called 'fossils'.  They prove that the animals and plants of today are different from those of long ago.  The older the fossils, the bigger the differences from modern forms.   Evolution is what made this happen.  Evolution is a fact, and there is a lot of evidence that shows it is true. Scientists continue to study evolution to learn more about it.

Comparing DNA sequences helps scientists group living things based on how similar their DNA is. In 2010, a study compared DNA to family trees of evolution. This showed that all life comes from a common ancestor. Now, there is clear proof that life is connected through evolution.

## Evidence 
The evidence for evolution is given in a number of books. Some of this evidence is discussed here.

### Fossils show that change has occurred 
The realization that some rocks contain fossils was a very important event in natural history. There are three parts to this story:

1. The realization that things in rocks which *looked* organic actually *were* the altered remains of living things. This was settled in the 16th and 17th centuries by Conrad Gessner, Nicolaus Steno, Robert Hooke and others.

2. The realization that many fossils represented species which do not exist today. It was Georges Cuvier, the comparative anatomist, who proved that extinction occurred and that different strata contained different fossils.p108

3. The realization that early fossils were simpler organisms than later fossils. Also, the later the rocks, the more like the present day are the fossils.

:"The most convincing evidence for the occurrence of evolution is the discovery of extinct organisms in older geological strata... The older the strata are...the more different the fossil will be from living representatives... that is to be expected if the fauna and flora of the earlier strata had gradually evolved into their descendants. *Ernst Mayr* p13

### Geographical distribution 
 are a family of flowering plants entirely limited to the southern continents.]]
Where species live is a topic which fascinated both Charles Darwin and Alfred Russel Wallace. When new species occur, usually by the splitting of older species, this takes place in one place in the world. Once it is established, a new species may spread to some places and not others.

#### Australasia 
Australasia has been separated from other continents for many millions of years. In the main part of the continent, Australia, 83% of mammals, 89% of reptiles, 90% of fish and insects, and 93% of amphibians are endemic. Its native mammals are mostly marsupials like kangaroos, bandicoots, and quolls. By contrast, marsupials are today totally absent from Africa and form a small portion of the mammalian fauna of South America, where opossums, shrew opossums, and the monito del monte occur (see the Great American Interchange).

The only living representatives of primitive egg-laying mammals (monotremes) are the echidnas and the platypus. They are only found in Australasia, which includes Tasmania, New Guinea, and Kangaroo Island. These monotremes are totally absent in the rest of the world. On the other hand, Australia is missing many groups of placental mammals that are common on other continents (carnivora, artiodactyls, shrews, squirrels, lagomorphs), although it does have indigenous bats and rodents, which arrived later.

The evolutionary story is that placental mammals evolved in Eurasia, and wiped out the marsupials and monotremes wherever they spread. They did not reach Australasia until more recently. That is the simple reason why Australia has most of the world's marsupials and all the world's monotremes.

#### Evolution of horses 
s of our horses lived in forests.]]

The evolution of the horse family (Equidae) is a good example of the way that evolution works. The oldest fossil of a horse is about 52 million years old. It was a small animal with five toes on the front feet and four on the hind feet. At that time, there were more forests in the world than today. This horse lived in woodland, eating leaves, nuts and fruit with its simple teeth. It was only about as big as a fox. Horses lived in western Canada until 12,000 years ago, but all horses in North America became extinct about 11,000 years ago. The causes of this extinction are not yet clear. Climate change and over-hunting by humans are suggested.

So, scientists can see that changes have happened. They have happened slowly over a long time. How these changes have come about is explained by the theory of evolution.

#### Hawaiian *Drosophila* (fruit flies)
In about , the Hawaiian Islands have the most diverse collection of *Drosophila* flies in the world, living from rainforests to mountain meadows. About 800 Hawaiian fruit fly species are known.

Genetic evidence shows that all the native fruit fly species in Hawaii have descended from *a single ancestral species* that came to the islands, about 20 million years ago. Later adaptive radiation was caused by a lack of competition and a wide variety of vacant niches. Although it would be possible for a single pregnant female to colonise an island, it is more likely to have been a group from the same species.

#### Distribution of *Glossopteris* 
The combination of continental drift and evolution can explain what is found in the fossil record. *Glossopteris* is an extinct species of seed fern plants from the Permian period on the ancient supercontinent of Gondwana.

*Glossopteris* fossils are found in Permian strata in southeast South America, southeast Africa, all of Madagascar, northern India, all of Australia, all of New Zealand, and scattered on the southern and northern edges of Antarctica.

During the Permian, these continents were connected as Gondwana. This is known from magnetic striping in the rocks, other fossil distributions, and glacial scratches pointing away from the temperate climate of the South Pole during the Permian.p402 They have six legs; they have hard parts on the outside of the body (an exoskeleton); they have eyes formed of many separate chambers, and so on. Biologists explain this with evolution. All insects are the s of a group of animals who lived a long time ago. They still keep the basic plan (six legs and so on) but the details change. They look different now because they changed in different ways: this is evolution.

It was Darwin who first suggested that all life on Earth had a single origin, and from that beginning "endless forms most beautiful and most wonderful have been, and are being, evolved".p490

### Vestigial structures 
Strong evidence for common descent comes from vestigial structures. This list included examples such as the appendix and the 3rd molar teeth (wisdom teeth).

The strong grip of a baby is another example. It is a vestigial reflex, a remnant of the past when pre-human babies clung to their mothers' hair as the mothers swung through the trees. Human babies' feet curl up when they are sitting down, while primate babies can grip with their feet as well. All primates except modern man have thick body hair which an infant can grasp, unlike modern humans. The grasp reflex allows the mother to escape danger by climbing a tree using both hands and feet.

Vestigial organs often have some selection against them. The original organs take resources to build and maintain. If they no longer have a function, reducing their size improves fitness. There is direct evidence of selection. Some cave crustacea reproduce more successfully with smaller eyes than do those with larger eyes. This may be because the nervous tissue dealing with sight now becomes available to handle other sensory input.p310

### Embryology 
From the eighteenth century, it was known that embryos of different species were much more similar than the adults. In particular, some parts of embryos reflect their evolutionary past. For example, the embryos of land vertebrates develop gill slits like fish embryos. Of course, this is only a temporary stage, which gives rise to many structures in the neck of reptiles, birds, and mammals. The proto-gill slits are part of a complicated system of development: that is why they persisted. They are later lost. The baleen filter is developed from different tissue, called keratin. Early fossil baleen whales did actually have teeth as well as the baleen.

A good example is the barnacle. It took many centuries before natural historians discovered that barnacles were crustacea. Their adults look so unlike other crustacea, but their larvae are very similar to those of other crustacea.

### Artificial selection 
 and Great Dane show the range of dog breed sizes produced by artificial selection.]]
's few fruit cases (left) into modern corn's rows of exposed kernels (right).]]

Charles Darwin lived in a world where animal husbandry and domesticated crops were vitally important. In both cases, farmers selected individuals for breeding that had desirable characteristics and prevented the breeding of individuals with less desirable characteristics. The eighteenth and early nineteenth centuries saw growth in scientific agriculture. Some of that growth was due to artificial breeding.

Darwin discussed artificial selection as a model for natural selection in the 1859 first edition of his work *On the Origin of Species*, in Chapter IV: Natural selection: 
:"Slow though the process of selection may be, if feeble man can do much by his powers of artificial selection, I can see no limit to the amount of change... which may be effected in the long course of time by nature's power of selection".

 is a now a crop. Originally it was a mimetic weed of wheat.]]
Nikolai Vavilov showed that rye, originally a weed, came to be a crop plant by  selection. Rye is a tougher plant than wheat: it survives in harsher conditions. Having become a crop like wheat, rye was able to become a crop plant in harsh areas, such as hills and mountains.
  
There is no real difference in the genetic processes underlying artificial and natural selection, and the concept of artificial selection was used by Charles Darwin as an illustration of the wider process of natural selection. There are practical differences. Experimental studies of artificial selection show that "the rate of evolution in selection experiments is at least two orders of magnitude (that is 100 times) greater than any rate seen in nature or the fossil record".p157

#### Artificial new species 
Some have thought that artificial selection could not produce new species. It now seems that it can.

New species have been created by domesticated animal husbandry, but the details are not known or not clear. For example, domestic sheep were created by hybridisation, and no longer produce viable offspring with *Ovis orientalis*, one species from which they are descended. Domestic cattle, on the other hand, can be considered the same species as several varieties of wild ox, gaur, yak, etc., as they readily produce fertile offspring with them.

The best-documented new species came from laboratory experiments in the late 1980s. William Rice and G.W. Salt bred fruit flies, *Drosophila melanogaster,* using a maze with three different choices of habitat such as light/dark and wet/dry. Each generation was put into the maze, and the groups of flies that came out of two of the eight exits were set apart to breed with each other in their respective groups.

After thirty-five generations, the two groups and their offspring were isolated reproductively because of their strong habitat preferences: they mated only within the areas they preferred, and so did not mate with flies that preferred the other areas.

Diane Dodd was also able to show how reproductive isolation can develop from mating preferences in *Drosophila pseudoobscura* fruit flies after only eight generations using different food types, starch, and maltose.

Dodd's experiment has been easy for others to repeat. It has also been done with other fruit flies and foods.

### Observable changes 
Some biologists say that evolution has happened when a trait that is caused by genetics becomes more or less common in a group of organisms. Others call it evolution when new species appear.

Changes can happen quickly in smaller, simpler organisms. For example, many bacteria that cause disease can no longer be killed with some antibiotic medicines. These medicines have only been in use since the 1940s, and at first, they worked extremely well. The bacteria have evolved so that they are less affected by antibiotics. The drugs killed off all the bacteria except a few which had some resistance. These few resistant bacteria reproduced, and their offspring had the same drug resistance.

The Colorado beetle is famous for its ability to resist pesticides. Over the last 50 years it has become resistant to 52 chemical compounds used in insecticides, including cyanide. This is natural selection sped up by artificial conditions. However, not every population is resistant to every chemical. The populations only become resistant to chemicals used in their area.

## History 
Although there were a number of natural historians in the 18th century who had some idea of evolution, the first well-formed ideas came in the 19th century. Four biologists are considered the most important.

### Lamarck 
Jean-Baptiste de Lamarck (1744–1829), a French biologist, claimed that animals changed according to natural laws. He said that animals could pass on traits they had acquired during their lifetime to their offspring, using inheritance. Today, his theory is known as Lamarckism. Its main purpose is to explain adaptations by natural means. He proposed a tendency for organisms to become more complex, moving up a ladder of progress, plus *use and disuse*.

Lamarck's idea was that a giraffe's neck grew longer because it tried to reach higher up. This idea failed because it conflicts with heredity (Mendel's work). Mendel made his discoveries about half a century after Lamarck's work.

### Darwin 
Charles Darwin (1809–1882) wrote his *On the Origin of Species* in 1859. In this book, he put forward much evidence that evolution had occurred. He also proposed natural selection as the way evolution had taken place. But Darwin did not understand genetics and how traits were actually passed on. He could not accurately explain what made children look like their parents.

Nevertheless, Darwin's explanation of evolution was fundamentally correct. In contrast to Lamarck, Darwin's idea was that the giraffe's neck became longer because *those with longer necks survived better*. Genes are bits of information made of DNA which work like a set of instructions. A set of genes are in every living cell. Together, genes organise the way an egg develops into an adult. With mammals, and many other living things, a copy of each gene comes from the father and another copy from the mother. Some living organisms, including some plants, only have one parent, so get all their genes from them. These genes produce the genetic differences that evolution acts on.

## Darwin's theory 
Darwin's *On the Origin of Species* has two themes: the evidence for evolution, and his ideas on how evolution took place. This section deals with the second issue.

### Variation 
The first two chapters of the *Origin* deal with variations in domesticated plants and animals, and variations in nature.

All living things show variation. Every population which has been studied shows that animals and plants vary as much as humans do.

The features of an individual are influenced by two things, heredity and environment. First, development is controlled by genes inherited from the parents. Second, living brings its own influences. Some things are entirely inherited, others partly, and some not inherited at all.

The colour of eyes is entirely inherited; they are a genetic trait. Height or weight is only partly inherited, and language is not at all inherited. The fact that humans can speak is inherited, but what language is spoken depends on where a person lives and what they are taught. Another example: a person inherits a brain of somewhat variable capacity. What happens after birth depends on many things such as home environment, education, and other experiences. When a person is an adult, their brain is what their inheritance and life experience have made it.

*Evolution only concerns the traits which can be inherited*, wholly or partly. The hereditary traits are passed on from one generation to the next through genes. A person's genes contain all the characteristics that they inherit from their parents. The accidents of life are not passed on. Each person lives a somewhat different life, which increases the differences.

Organisms in any population vary in reproductive success.p81 From the point of view of evolution, 'reproductive success' means the total number of offspring which live to breed and leave offspring themselves.

#### Inherited variation 
Variation can only affect future generations if it is inherited. Because of the work of Gregor Mendel, we know that much variation is inherited. Mendel's 'factors' are now called genes. Research has shown that *almost every individual in a sexually reproducing species is genetically unique*.p204

Genetic variation is increased by gene mutations. DNA does not always reproduce exactly. Rare changes occur, and these changes can be inherited. Many changes in DNA cause faults; some are neutral or even advantageous. This gives rise to genetic variation, which is the seed corn of evolution. Sexual reproduction, by the crossing over of chromosomes during meiosis, spreads variation through the population. Other events, like natural selection and drift, reduce variation. A population in the wild always has variation, but the details are always changing.p90

### Natural selection 
Evolution mainly works by natural selection. What does this mean? Animals and plants which are best suited to their environment will, on average, survive better. There is a struggle for existence. Those who survive will reproduce and create the next generation. Their genes will be passed on, and the genes of those who did not reproduce will not. This is the basic mechanism which changes the characteristics of a population and causes evolution.

Natural selection explains why living organisms change over time, and explains the anatomy, functions, and behavior that they have. It works like this:
# All living things have such fertility that their population size could increase rapidly forever.
# However, population sizes do not increase forever. Mostly, population sizes remain about the same.
# Food and other resources are limited. Therefore, there is competition for food and resources.
# No two individuals are alike. Therefore, they will not have the same chances to live and reproduce.
# Much of this variation can be inherited. Parents pass traits to their children through their genes.
# *The next generation can only come from those that survive and reproduce*. After many generations of this, the population will have more helpful genetic differences, and fewer harmful ones. *Natural selection is really a process of elimination*.
 usually cannot drink milk as adults, but humans are an exception]]
The force of selection can be much stronger than was thought by the early population geneticists. The resistance to pesticides has grown quickly. Resistance to *warfarin* in Norway rats (*Rattus norvegicus*) grew rapidly because those that survived made up more and more of the population. Research showed that, in the absence of *warfarin*, the resistant homozygote was at a 54% disadvantage to the normal wild type homozygote. This great disadvantage was quickly overcome by the selection for *warfarin* resistance.

Mammals normally cannot drink milk as adults, but humans are an exception. Milk is digested by the enzyme lactase, which switches off as mammals stop taking milk from their mothers. The human ability to drink milk during adult life is supported by a lactase mutation which prevents this switch-off. Human populations have a high proportion of this mutation wherever milk is important in the diet. The spread of this 'milk tolerance' is promoted by natural selection, because it helps people survive where milk is available. Genetic studies suggest that the oldest mutations causing lactase persistence only reached high levels in human populations in the last ten thousand years. Therefore, lactase persistence is often cited as an example of recent human evolution. As lactase persistence is genetic, but animal husbandry a cultural trait, that is gene–culture coevolution.

### Adaptation 
Adaptation is one of the basic phenomena of biology. Through the process of adaptation, an organism becomes better suited to its habitat.

Adaptation is one of the two main processes that explain the diverse species we see in biology.  The other is speciation (species-splitting or cladogenesis). A favourite example used today to study the interplay of adaptation and speciation is the evolution of cichlid fish in African rivers and lakes.

When people speak about adaptation they often mean something which helps an animal or plant survive. One of the most widespread adaptations in animals is the evolution of the eye. Another example is the adaptation of modern horses' teeth to grinding grass. Camouflage is another adaptation; so is mimicry. The better-adapted animals are the most likely to survive and reproduce successfully (natural selection).

An internal parasite (such as a fluke) is a good example: it has a very simple bodily structure, but still the organism is highly adapted to its particular environment. From this we see that adaptation is not just a matter of visible traits: in such parasites, critical adaptations take place in the life cycle, which is often quite complex.

#### Limitations 
Not all features of an organism are adaptations. ♦ In late 1800s, hunting reduced the Northern elephant seal to only about 20 individuals. Although the population has rebounded, its genetic variability is much less than that of the Southern elephant seal.♦ Cheetahs have very little variation. We think the species was reduced to a small number at some recent time. Because it lacks genetic variation, it is in danger of infectious diseases.
#Founder events: these occur when a small group buds off from a larger population. The small group then lives separately from the main population. The human species is often quoted as having been through such stages. For example, when groups left Africa to set up elsewhere (see human evolution). Apparently, we have less variation than would be expected from our worldwide distribution. Groups that arrive on islands far from the mainland are also good examples. These groups, by virtue of their small size, cannot carry the full range of alleles to be found in the parent population.

### Species 
How species form is a major part of evolutionary biology. Darwin interpreted 'evolution' (a word he did not use at first) as being about speciation. That is why he called his famous book *On the Origin of Species*.

Darwin thought most species arose directly from pre-existing species. This is called *anagenesis*: new species by older species changing. Now we think most species arise by previous species splitting: *cladogenesis*.

#### Species splitting 
Two groups that start the same can become very different if they live in different places. When a species gets split into two geographical regions, a process starts. Each adapts to its own situation. After a while, individuals from one group can no longer reproduce with the other group. Two separate species have evolved from one.

A German explorer, Moritz Wagner, during his three years in Algeria in the 1830s, studied flightless beetles. Each species is confined to a stretch of the north coast between rivers which descend from the Atlas mountains to the Mediterranean. As soon as one crosses a river, a different but closely related species appears. He wrote later:
:"... a [new] species will only [arise] when a few individuals [cross] the limiting borders of their range... the formation of a new race will never succeed... without a long continued separation of the colonists from the other members of their species".
This was an early account of the importance of geographical separation. Another biologist who thought geographical separation was critical was Ernst Mayr.

One example of natural speciation is the three-spined stickleback, a sea fish that, after the last ice age, invaded freshwater, and set up colonies in isolated lakes and streams. Over about 10,000 generations, the sticklebacks show great differences, including variations in fins, changes in the number or size of their bony plates, variable jaw structure, and colour differences.

The wombats of Australia fall into two main groups, common wombats and hairy-nosed wombats. The two types look very similar, apart from the hairiness of their noses. However, they are adapted to different environments. Common wombats live in forested areas and eat mostly green food with lots of moisture. They often feed in the daytime. Hairy-nosed wombats live on hot dry plains where they eat dry grass with very little water or nutrition in it. Their metabolic rate is slow and they sleep most of the day underground.

When two groups that started the same become different enough, then they become two different species. Part of the theory of evolution is that all living things started the same, but then split into different groups over billions of years.

## Modern evolutionary synthesis 
This was an important movement in evolutionary biology, which started in the 1930s and finished in the 1950s. It has been updated regularly ever since.
The synthesis explains how the ideas of Charles Darwin fit with the discoveries of Gregor Mendel, who found out how we inherit our genes. The modern synthesis brought Darwin's idea up to date. It bridged the gap between different types of biologists: geneticists, naturalists, and palaeontologists.
 provide evidence of evolutionary drift. These fossils from the Cretaceous age were found in Lebanon]]
When the theory of evolution was developed, it was not clear that natural selection and genetics worked together. But Ronald Fisher showed that natural selection would work to change species. Sewall Wright explained genetic drift in 1931.

*Evolution and genetics: evolution can be explained by what we know about genetics, and what we see of animals and plants living in the wild.
*Evolution and fossils: *the same factors which act today also acted in the past*.
*Gradualism: evolution is gradual, and usually takes place by small steps. There are some exceptions to this, notably polyploidy, especially in plants.
*Natural selection: the struggle for existence of animals and plants in the wild causes natural selection. *The strength of natural selection in the wild was greater than even Darwin expected*.
*Genetic drift can be important in small populations. The gut contents, wing structures, and mouthparts of fossilized beetles and flies suggest that they acted as early pollinators. The association between beetles and angiosperms during the Lower Cretaceous period led to parallel radiations of angiosperms and insects into the late Cretaceous. The evolution of nectaries in Upper Cretaceous flowers signals the beginning of the mutualism between hymenoptera and angiosperms.

### Tree of life 
Charles Darwin was the first to use this metaphor in biology. The *evolutionary tree* shows the relationships among various biological groups. It includes data from DNA, RNA and protein analysis. Tree of life work is a product of traditional comparative anatomy, and modern molecular evolution and molecular clock research.

The major figure in this work is Carl Woese, who defined the Archaea, the third domain (or kingdom) of life. Below is a simplified version of present-day understanding. 

### Macroevolution 
Macroevolution: the study of changes above the species level, and how they take place. The basic data for such a study are fossils (palaeontology) and the reconstruction of ancient environments. Some subjects whose study falls within the realm of macroevolution:
* Adaptive radiation, such as the Cambrian Explosion.
* Changes in biodiversity through time.
* Mass extinctions.
* Speciation and extinction rates.
* The debate between punctuated equilibrium and gradualism.
* The role of development in shaping evolution: heterochrony; hox genes.
* Origin of major categories: cleidoic egg; origin of birds.
It is a term of convenience: for most biologists it does not suggest any change in the process of evolution.p87 For some palaeontologists, what they see in the fossil record cannot be explained just by the gradualist evolutionary synthesis. They are in the minority.

### Altruism and group selection 
Altruism – the willingness of some to sacrifice themselves for others – is widespread in social animals. As explained above, the next generation can only come from those who survive and reproduce. Some biologists have thought that this meant altruism could not evolve by the normal process of selection. Instead a process called "group selection" was proposed. Group selection refers to the idea that alleles can become fixed or spread in a population because of the benefits they bestow on groups, regardless of the alleles' effect on the fitness of individuals within that group.

For several decades, critiques cast serious doubt on group selection as a major mechanism of evolution.

In simple cases it can be seen at once that traditional selection suffices. For example, if one sibling sacrifices itself for three siblings, the genetic disposition for the act will be increased. This is because siblings share on average 50% of their genetic inheritance, and the sacrificial act has led to greater representation of the genes in the next generation.

Altruism is now generally seen as emerging from standard selection. The warning note from Ernst Mayr, and the work of William Hamilton are both important to this discussion.

#### Hamilton's equation 
Hamilton's equation describes whether or not a gene for altruistic behaviour will spread in a population. The gene will spread if **r**x**b** is greater than **c**:
:rb > c \ 
where:
* c \  is the reproductive cost to the altruist,
* b \  is the reproductive benefit to the recipient of the altruistic behavior, and
* r \  is the probability, above the population average, of the individuals sharing an altruistic gene – the "degree of relatedness".

### Sexual reproduction 
At first, sexual reproduction might seem to be at a disadvantage compared with asexual reproduction. In order to be advantageous, sexual reproduction (cross-fertilisation) has to overcome a two-fold disadvantage (takes two to reproduce) plus the difficulty of finding a mate. Why, then, is sex so nearly universal among eukaryotes? This is one of the oldest questions in biology.

The answer has been given since Darwin's time: because the sexual populations adapt better to changing circumstances. A recent laboratory experiment suggests this is indeed the correct explanation.

:"When populations are outcrossed genetic recombination occurs between different parental genomes. This allows beneficial mutations to escape deleterious alleles on its original background, and to combine with other beneficial alleles that arise elsewhere in the population. In selfing populations, individuals are largely homozygous and recombination has no effect". After 50 generations, the selfing population showed a substantial decline in fitness (= survival), whereas the outcrossing population showed no decline. This is one of a number of studies that show sexuality to have real advantages over non-sexual types of reproduction.

## What evolution is used for today 
An important activity is artificial selection for domestication. This is when people choose which animals to breed from, based on their traits. Humans have used this for thousands of years to domesticate plants and animals.

More recently, it has become possible to use genetic engineering. New techniques such as 'gene targeting' are now available. The purpose of this is to insert new genes or knock out old genes from the genome of a plant or animal. A number of Nobel Prizes have already been awarded for this work.

However, the real purpose of studying evolution is to explain and help our understanding of biology. After all, it is the first good explanation of how living things came to be the way they are. That is a big achievement. The practical things come mostly from genetics, the science started by Gregor Mendel, and from molecular and cell biology.

## Evolution gems 
In 2010 the journal *Nature* selected 15  as 'Evolution gems'. These were:

### Gems from the fossil record 
#Land-living ancestors of whales
#From water to land (see tetrapod)
#The origin of feathers (see origin of birds)
#The evolutionary history of teeth
#The origin of vertebrate skeleton

### Gems from habitats 
#Natural selection in speciation
#Natural selection in lizards
#A case of co-adaptation
#Differential dispersal in wild birds
#Selective survival in wild guppies
#Evolutionary history matters

### Gems from molecular processes 
#Darwin's Galapagos finches
#Microevolution meets macroevolution
#Toxin resistance in snakes and clams
#Variation versus stability

**Nature* is the oldest scientific weekly journal. The link downloads as a free text file, complete with references. The idea is to make the information available to teachers.

## Responses to the idea of evolution 
### Debates about the fact of evolution 
 became accepted in the 1870s, caricatures of Charles Darwin with an ape body symbolized evolution.]]

The idea that all life evolved had been proposed before Charles Darwin published *On the Origin of species*. Even today, some people still discuss the concept of evolution and what it means to them, their philosophy, and their religion. Evolution does explain some things about our human nature. People also talk about the social implications of evolution, for example in sociobiology.

Some people have the religious belief that life on Earth was created by a god. In order to fit in the idea of evolution with that belief, people have used ideas like *guided evolution* or *theistic evolution*. They say that evolution is real, but is being guided in some way.

There are many different concepts of *theistic evolution*. Many creationists believe that the creation myth found in their religion goes against the idea of evolution. As Darwin realised, the most controversial part of the evolutionary thought is what it means for human origins.

In some countries, especially in the United States, there is tension between people who accept the idea of evolution and those who do not accept it. The debate is mostly about whether evolution should be taught in schools, and in what way this should be done.

Other fields, like cosmology and earth science also do not match with the original writings of many religious texts. These ideas were once also fiercely opposed. Death for heresy was threatened to those who wrote against the idea that Earth was the center of the universe.

Evolutionary biology is a more recent idea. Certain religious groups oppose the idea of evolution more than other religious groups do. For instance, the Roman Catholic Church now has the following position on evolution: Pope Pius XII said in his encyclical *Humani Generis* published in the 1950s:
:"The Church does not forbid that (...) research and discussions (..) take place with regard to the doctrine of evolution, in as far as it inquires into the origin of the human body as coming from pre-existent and living matter," Pope Pius XII *Humani Generis*

Pope John Paul II updated this position in 1996. He said that Evolution was "more than a hypothesis":
:"In his encyclical Humani Generis, my predecessor Pius XII has already said that there is no conflict between evolution and the doctrine of the faith regarding man and his vocation. (...) Today, more than a half-century after (..) that encyclical, some new findings lead us toward the recognition of evolution as more than an hypothesis. In fact it is remarkable that this theory has had progressively greater influence on the spirit of researchers, following a series of discoveries in different scholarly disciplines," Pope John Paul II speaking to the Pontifical Academy of Science

The Anglican Communion also does not oppose the scientific account of evolution.

### Using evolution for other purposes 
Many of those who accepted evolution were not much interested in biology. They were interested in using the theory to support their own ideas on society.

#### Racism 
Some people have tried to use evolution to support racism. People wanting to justify racism claimed that certain groups, such as black people, were inferior. In nature, some animals do *survive* better than others, and it does lead to animals better adapted to their circumstances. With humans groups from different parts of the world, all evolution can say is that each group is probably well suited to its original situation. Evolution makes no judgements about better or worse. It does *not* say that any human group is superior to any other.

#### Eugenics 
The idea of eugenics was rather different. Two things had been noticed as far back as the 18th century. One was the great success of farmers in breeding cattle and crop plants. They did this by selecting which animals or plants would produce the next generation (artificial selection). The other observation was that lower class people had more children than upper-class people. If (and it's a big if) the higher classes were there on *merit*, then their lack of children was the exact reverse of what should be happening. Faster breeding in the lower classes would lead to the society getting worse.

The idea to improve the human species by selective breeding is called eugenics. The name was proposed by Francis Galton, a bright scientist who meant to do good.  He said that the human stock (gene pool) should be improved by selective breeding policies. This would mean that those who were considered "good stock" would receive a reward if they reproduced. However, other people suggested that those considered "bad stock" would need to undergo compulsory sterilization, prenatal testing and birth control. The German Nazi government (1933–1945) used eugenics as a cover for their extreme racial policies, with dreadful results.

The problem with Galton's idea is how to decide which features to select. There are so many different skills people could have, you could not agree who was "good stock" and who was "bad stock". There was rather more agreement on who should *not* be breeding. Several countries passed laws for the compulsory sterilisation of unwelcome groups. Most of these laws were passed between 1900 and 1940. After World War II, disgust at what the Nazis had done squashed any more attempts at eugenics.

#### Algorithm design 
Some equations can be  using algorithms that simulate evolution. Evolutionary algorithms work like that.

#### Social Darwinism 
Another example of using ideas about evolution to support social action is social Darwinism. Social Darwinism is a term given to the ideas of the 19th century social philosopher Herbert Spencer. Spencer believed the *survival of the fittest* could and should be applied to commerce and human societies as a whole.

Again, some people used these ideas to claim that racism, and ruthless economic policies were justified. Today, most biologists and philosophers say that the theory of evolution should not be applied to social policy.

### Controversy 
Some people disagree with the idea of evolution. They disagree with it for a number of reasons. Most often these reasons are influenced by or based on their religious beliefs instead of science. People who do not agree with evolution usually believe in creationism or intelligent design.

Despite this, evolution is one of the most successful theories in science. People have discovered it to be useful for different kinds of research. None of the other suggestions explain things, such as fossil records, as well. So, for almost all scientists, evolution is not in doubt.

## Further reading 
### Evidence for evolution 
These books are mostly about the evidence for evolution.
*Coyne, Jerry A. 2009 *Why evolution is true*. Oxford University Press, Oxford.  (pbk)
*Dawkins, Richard 2009. *The greatest show on Earth*. Bantam, London.  (hbk)
*Futuyma D.J. 1983. *Science on trial: the case for evolution*. Pantheon Books, New York. ; 2nd ed 1995 Sinauer Associates, Sunderland, Massachusetts. .
*Prothero, Donald R. 2007. *Evolution: what the fossils say and why it matters*. Columbia University Press, New York.  (hbk)

### The process of evolution
These books cover most evolutionary topics.
*Barton N.H; Briggs D.E.G; Eisen J.A; Goldstein D.B. & Patel N.H. 2007. *Evolution*. New York: Cold Spring Harbor Laboratory Press. . Strong in molecular evolution; brings together molecular biology with evolutionary concepts.
*Futuyma D.J. 1979. *Evolutionary biology*. 1st ed. Sinauer Associates, Sunderland, Massachusetts. ; 2nd ed 1986 Sinauer. ; 3rd ed 1998 Sinauer. . Widely used textbook, available second-hand. For students and teachers.
* Futuyma D.J. 2005. *Evolution*. Sinauer Associates, Sunderland, Massachusetts. ; 2nd ed 2009 Sinauer. . Successor to above; but basically a different book. For students and teachers.
*Freeman, Scott & Herron, Jon; 1997. *Evolutionary analysis*. Prentice Hall ; 2nd ed 2000 ; 3rd ed 2004 Cummings ; 4th ed 2007 Cummings . Modern topics such as phylogenetic trees based on genomics, genetics, molecular biology. Has website: http://www.aw-bc.com/freeman/  For students and teachers.
*Ridley, Mark 1993. *Evolution*. Blackwell ; 2nd ed 1996 Wiley-Blackwell ; 3rd ed 2003 Wiley . Comprehensive: case studies, commentary, dedicated website and CD. For students and teachers.
* Mayr, Ernst. 2001. *What evolution is*. Weidenfeld & Nicolson, London. . Clearly written, for a general audience.

## Related pages
*Evolutionary biology
*Coevolution
*Human evolution
*Adaptation
*Natural selection
*Sociobiology

## References 
## Other websites 
* 
* Understanding Evolution - a guide prepared by the University of California, Berkeley
* Darwin Online Darwin's publications; papers and bibliography; biographies and reviews.
* Talk Origins in depth website on information about evolution and the evidence for it
* National Center for Science Education Information on how evolution works
* Article about evolution - PBS