Systems metabolic engineering
Subtitle: methods and protocols
By: edited by Hal S. Alper
Series: Methods in molecular biology -- v. 985; Methods in molecular biology (Clifton, N.J.) -- v. 985.
Publisher: Humana Press
Published: 2013
Place of publication: New York
Language: eng
Number of pages: 474
ISBN-13: 9781627032988; 9781627032995
Subjects: Biomedical engineering; Metabolism; Systems biology; Metabolic Engineering
Notes: Includes bibliographical references and index.
Table of contents: title: Genome-scale model management and comparison  -- Stephan Pabinger and Zlatko Trajanoski; title: Automated genome annotation and metabolic model reconstruction in the SEED and model SEED  -- Scott Devoid ... [et al.]; title: Metabolic model refinement using phenotypic microarray data  -- Pratish Gawand ... [et al.]; title: Linking genome-scale metabolic modeling and genome annotation  -- Edik M. Blais, Arvind K. Chavali, and Jason A. Papin; title: Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm  -- Ryan S. Senger and Hadi Nazem-Bokaee; title: Guide to integrating transcriptional regulatory and metabolic networks using PROM (probabilistic regulation of metabolism)  -- Evangelos Simeonidis, Sriram Chandrasekaran, and Nathan D. Price; title: Kinetic modeling of metabolic pathways : application to serine biosynthesis  -- Kieran Smallbone and Natalie J. Stanford; title: Computational tools for guided discovery and engineering of metabolic pathways  -- Matthew Moura, Linda Broadbelt, and Keith Tyo; title: Retrosynthetic design of heterologous pathways  -- Pablo Carbonell, Anne-Gaelle Planson, and Jean-Loup Faulon; title: Customized optimization of metabolic pathways by combinatorial transcriptional engineering  -- Yongbo Yuan, Jing Du, and Huimin Zhao; title: Adaptive laboratory evolution for strain engineering  -- James Winkler, Luis H. Reyes, and Katy C. Kao; title: Trackable multiplex recombineering for gene-trait mapping in E. coli  -- Thomas J. Mansell, Joseph R. Warner, and Ryan T. Gill; title: Identification of mutations in evolved bacterial genomes  -- Liam Royce ... [et al.]; title: Discovery of posttranscriptional regulatory RNAs using next generation sequencing technologies  -- Grant Gelderman and Lydia M. Contreras; title: 13C-based metabolic flux analysis : fundamentals and practice  -- Tae Hoon Yang; title: Nuclear magnetic resonance methods for metabolic fluxomics  -- Shilpa Nargund ... [et al.]; title: Using multiple tracers for 13C metabolic flux analysis  -- Maciek R. Antoniewicz; title: Isotopically nonstationary 13C metabolic flux analysis  -- Lara J. Jazmin and Jamey D. Young; title: Sample preparation and biostatistics for integrated genomics approaches  -- Hein Stam ... [et al.]; title: Targeted metabolic engineering guided by computational analysis of single-nucleotide polymorphisms (SNPs)  -- D.B.R.K. Gupta Udatha ... [et al.]; title: Linking RNA measurements and proteomics with genome-scale models  -- Christopher M. Gowen and Stephen S. Fong; title: Comparative transcriptome analysis for metabolic engineering  -- Shuobo Shi, Tao Chen, and Xueming Zhao; title: Merging multiple omics datasets in silico : statistical analyses and data interpretation -- Kazuharu Arakawa and Masaru Tomita.