Proteome bioinformatics
By: edited by Simon J. Hubbard, Andrew R. Jones
Series: Springer protocols; Methods in molecular biology -- 604; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 604.
Publisher: Humana
Published: 2010
Place of publication: New York, NY
Language: eng
Number of pages: 403
ISBN-13: 9781607614432; 9781607614449
Subjects: Mass Spectrometry; Methods; Computational Biology; Proteomics; Molekulare Bioinformatik; Analysis; Proteom; Peptides; Factual Databases; Proteome; Data processing
Notes: Includes bibliographical references and index.

Also available in an electronic version.
Table of contents: title: 1. An introduction to proteome bioinformatics / Andrew R. Jones and Simon J. Hubbard; title: 2. Bioinformatics methods for protein identifiction using peptide mass fingerprinting / Zhao Song, Luonan Chen, and Dong Xu; title: 3. Computational approaches to peptide identification via tandem MS / Simon J. Hubbard; title: 4. Scoring and validation of tandem MS peptide identification methods / Markus Brosch and Jyoti Choudhary; title: 5. Target-decoy search strategy for mass spectrometry-based proteomics / Joshua E. Elias and Steven P. Gygi; title: 6. Understanding and exploiting peptide fragment ion intensities using experimental and informatic approaches / Ashley C. Gucinski ... [et al.]; title: 7. Spectral library searching for peptide identification via tandem MS / Henry Lam and Ruedi Aebersold; title: 8. De Novo sequencing methods in proteomics / Christopher Hughes, Bin Ma, and Gilles A. Lajoie; title: 9. Cross species proteomics / J.C. Wright, R.J. Beynon, and S.J. Hubbard; title: 10. Gene model detection using mass spectrometry / Bindu Nanduri ... [et al.]; title: 11. Signal processing in proteomics / Rene Hussong and Andreas Hildebrandt; title: 12. A High performance reconfigurable computing solution for peptide mass fingerprinting / Daniel Coca, Istvan Bogdan, and Robert J. Beynon; title: 13. Mining proteomic MS/MS data for MRM transitions / Jennifer A. Chem (Mead), Luca Bianco, and Conrad Bessant; title: 14. OpenMS and TOPP: Open source software for LC-MS data analysis / Knut Reinert and Oliver Kohlbacher; title: 15. Trans-Proteomic pipeline: a pipeline for proteomic analysis / Patrick G.A. Pedrioli; title: 16. Informatics and statistics for analyzing 2-D gel electrophoresis images / Andrew W. Dowsey ... et al.; title: 17. Automated generic analysis tools for protein quantitation using stable isotope labeling / Wen-Lian Hsu and Ting-Yi Sung; title: 18. An Overview of label-free quantitation methods in proteomics by mass spectrometry / Jason W.H. Wong and Gerard Cagney; title: 19. The PeptideAtlas Project / Eric W. Deutsch; title: 20. Using the PRIDE proteomics identifications database for knowledge discovery and data analysis / Philip Jones and Lennart Martens; title: 21. Molecular interactions and data standardisation / Sandra Orchard and Samuel Kerrien; title: 22. Mass spectrometer ouput file format mxML / Eric W. Deutsch; title: 23. Managing experimental data using FuGE / Andrew R. Jones and Allyson L. Lister; title: 24. Proteomics data collection (ProDaC): Publishing and collection proteomics data sets in public repositories using standard formats / Christian Stephan ... [et al.]; title: 25. Computational resources for the prediction and analysis of native disorder in proteins / Melissa M. Pentony, Jonathan Ward, and David T. Jones.