Homology modeling
Subtitle: methods and protocols
By: edited by Andrew J. W. Orry, Ruben Abagyan
Series: Methods in molecular biology -- 857; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 857.; Springer protocols
Publisher: Humana Press; Springer
Published: 2012
Place of publication: New York
Language: eng
Number of pages: 419
ISBN-13: 9781617795879; 9781617795886
Subjects: Homology theory
Notes: Includes bibliographical references and index.
Table of contents: title: Classification of proteins : available structural space for molecular modeling  -- Antonina Andreeva; title: Effective techniques for protein structure mining  -- Stefan J. Suhrer ... [et al.]; title: Methods for sequence-structure alignment  -- Ceslovas Venclovas; title: Force fields for homology modeling  -- Andrew J. Bordner; title: Automated protein structure modeling with SWISS-MODEL workspace and the protein model portal  -- Lorenza Bordoli and Torsten Schwede; title: Practical introduction to molecular dynamics simulations : applications to homology modeling  -- Alessandra Nurisso, Antoine Daina, and Ross C. Walker; title: Methods for accurate homology modeling by global optimization  -- Keehyoung Joo, Jinwoo Lee, and Jooyoung Lee; title: Ligand-guided receptor optimization  -- Vsevolod Katritch, Manuel Rueda, and Ruben Abagyan; title: Loop simulations  -- Maxim Totrov; title: Methods of protein structure comparison  -- Irina Kufareva and Ruben Abagyan; title: Homology modeling of class A G protein-coupled receptors  -- Stefano Costanzi; title: Homology modeling of transporter proteins (carriers and ion channels)  -- Aina Westrheim Ravna and Ingebrigt Sylte; title: Methods for the homology modeling of antibody variable regions  -- Aroop Sircar; title: Investigating protein variants using structural calculation techniques  -- Jonas Carlsson and Bengt Persson; title: Macromolecular assembly structures by comparative modeling and electron microscopy  -- Keren Lasker ... [et al.]; title: Preparation and refinement of model protein-ligand complexes  -- Andrew J. W. Orry and Ruben Abagyan; title: Modeling peptide-protein interactions  -- Nir London, Barak Raveh, and Ora Schueler-Furman; title: Comparison of common homology modeling algorithms : application of user-defined alignments -- Michael A. Dolan, James W. Noah, and Darrell Hurt.