Batch effects and noise in microarray experiments, sources, and solutions
By: edited by Andreas Scherer.
Contributors: Scherer, Andreas, 1966-
Publisher: J. Wiley
Published: 2009
Place of publication: Chichester, West Sussex; Hoboken
Language: eng
ISBN-13: 9780470741382
Subjects: DNA microarrays; Oligonucleotide Array Sequence Analysis -- methods; Gene Expression Profiling; Reproducibility of Results
Notes: Includes bibliographical references and index.
Table of contents: title: Variation, variability, batches, and bias in microarray experiments : an introduction / Andreas Scherer; title: Microarray platforms and aspects of experimental variation / John Coller; title: Experimental design / Peter Grass; title: Batches and blocks, sample pools, and subsamples in the design and analysis of gene expression studies / Naomi Altman; title: Aspects of technical bias / Martin Schumacher ... [et al.]; title: Bioinformatic strategies for cDNA-microarray data processing / Jessica Fahlén ... [et al.]; title: Batch effect estimation of microarray platforms with analysis of variance / Nysia I. George and James J. Chen; title: Variance due to smooth bias in rat liver and kidney baseline gene expression in a large multi-laboratory data set / Michael J. Boedigheimer ... [et al.]; title: Microarray gene expression : the effects of varying certain measurement conditions / Walter Liggett ... [et al.]; title: Adjusting batch effects in microarray experiments with small sample size using empirical Bayes methods / W. Evan Johnson and Cheng Li; title: Identical reference samples and empirical bayes method for cross-batch gene expression analysis / Wynn L. Walker and Frank R. Sharp; title: Principal variance components analysis : estimating batch effects in microarray gene expression data / Jianying Li ... [et al.]; title: Batch profile estimation, correction, and scoring / Tzu-Ming Chu ... [et al.]; title: Visualization of cross-platform microarray normalization / Xuxin Liu ... [et al.]; title: Toward integration of biological noise : aggregation effect in microarray data analysis / Lev Klebanov and Andreas Scherer; title: Potential sources of spurious associations and batch effects in genome-wide association studies / Huixiao Hong ... [et al.]; title: Standard operating procedures in clinical gene expression biomarker panel development / Khurram Shahzad ... [et al.]; title: Data, analysis, and standardization / Gabriella Rustici, Andreas Scherer, and John Quackenbush.