Bioinformatics for DNA sequence analysis
By: edited by David Posada.
Contributors: Posada, David.
Series: Methods in molecular biology -- 537; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 537.; Springer protocols
Publisher: Humana Press
Published: 2009
Place of publication: New York
Language: eng
Number of pages: 354
ISBN-13: 9781588299109; 9781597452519
Subjects: Bioinformatics -- Laboratory manuals; Nucleotide sequence -- Laboratory manuals; Sequence Analysis, DNA -- methods; Computational Biology -- methods
Genres: Laboratory manuals
Notes: Includes bibliographical references and index.
Table of contents: title: Similarity searching using BLAST / Kit J. Menlove, Mark Clement, and Keith A. Crandall; title: Gene orthology assessment with OrthologID / Mary Egan ... [et al.]; title: Multiple alignment of DNA sequences with MAFFT / Kazutaka Katoh, George Asimenos, and Hiroyuki Toh; title: SeqVis : a tool for detecting compositional heterogeneity among aligned nucleotide sequences / Lars Sommer Jermiin ... [et al.]; title: Selection of models of DNA evolution with jModelTest / David Posada; title: Estimating maximum likelihood phylogenies with PhyML / Stéphane Guindon ... [et al.]; title: Trees from trees : construction of phylogenetic supertrees using clann / Christopher J. Creevey and James O. McInerney; title: Detecting signatures of selection from DNA sequences using datamonkey / Art F.Y. Poon, Simon D.W. Frost, and Sergei L. Kosakovsky Pond; title: Recombination detection and analysis using RDP3 / Darren P. Martin; title: CodonExplorer : an interactive online database for the analysis of codon usage and sequence composition / Jesse Zaneveld ... [et al.]; title: Genetic code prediction for metazoan mitochondria with GenDecoder / Federico Abascal, Rafael Zardoya, and David Posada; title: Computational gene annotation in new genome assemblies using GeneID / Enrique Blanco and Josep F. Abril; title: Promoter analysis : gene regulatory motif identification with A-GLAM / Leonardo Mariño-Ramírez ... [et al.]; title: Analysis of genomic DNA with the UCSC Genome Browser / Jonathan Pevsner; title: Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree / Jacqueline Batley and David Edwards; title: Analysis of transposable element sequences using CENSOR and RepeatMasker / Ahsan Huda and I. King Jordan; title: DNA sequence polymorphism analysis using DnaSP / Julio Rozas.