Data mining in proteomics
Subtitle: from standards to applications
By: edited by Michael Hamacher, Martin Eisenacher, and Christian Stephan
Series: Springer protocols; Methods in molecular biology -- v. 696; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 696.
Publisher: Humana Press
Published: 2011
Place of publication: New York, NY
Language: eng
Number of pages: 461
ISBN-13: 9781607619864
Subjects: Methods; Data mining; Proteomics; Data Mining; Laboratory Manuals; Medical Informatics
Notes: Includes bibliographical references and index.
Table of contents: title: Instruments and methods in proteomics / Caroline May ... [et al.]; title: In depth protein characterization by mass spectrometry / Daniel Chamrad, Gerhard Körting, and Martin Blüggel; title: Analysis of phosphoproteomics data / Christoph Schaab; title: The origin and early reception of sequence databases / Joel B. Hagen; title: Laboratory data and sample management for proteomics / Jari Häkkinen and Fredrik Levander; title: PRIDE and "database on demand" as valuable tools for computational proteomics / Juan Antonio Vizcaíno ... [et al.]; title: Analysing proteomics identifications in the context of functional and structural protein annotation : integrating annotation using PICR, DAS, and BioMart / Philip Jones; title: Tranche distributed repository and ProteomeCommons.org / Bryan E. Smith ... [et al.]; title: Data standardization by the HUPO-PSI : how has the community benefitted? / Sandra Orchard and Henning Hermjakob; title: mzIdentML : an open community-built standard format for the results of proteomics spectrum identification algorithms / Martin Eisenacher; title: Spectra, chromatograms, metadata : mzML-the standard data format for mass spectrometer output / Michael Turewicz and Eric W. Deutsch; title: imzML : imaging mass spectrometry markup language : a common data format for mass spectrometry imaging / Andreas Römpp ... [et al.]; title: Tandem mass spectrometry spectral libraries and library searching / Eric W. Deutsch; title: Inter-lab proteomics : data mining in collaborative projects on the basis of the HUPO Brain Proteome Project's pilot studies / Michael Hamacher ... [et al.]; title: Data management and data integration in the HUPO Plasma Proteome Project / Gilbert S. Omenn; title: Statistics in experimental design, preprocessing, and analysis of proteomics data / Klaus Jung; title: The evolution of protein interaction networks / Andreas Schüler and Erich Bornberg-Bauer; title: Cytoscape : software for visualization and analysis of biological networks / Michael Kohl, Sebastian Wiese, and Bettina Warscheid; title: Text mining for systems modeling / Axel Kowald and Seastian Schmeier; title: Identification of alternatively spliced transcripts using a proteomic informatics approach / Rajasree Menon and Gilbert S. Omenn; title: Distributions of ion series in ETD and CID spectra : making a comparison / Sarah R. Hart ... [et al.]; title: Evaluation of peak-picking algorighms for protein mass spectrometry / Chris Bauer, Rainer Cramer, and Johannes Schuchhardt; title: OpenMS and TOPP : open source software for LC-MS data analysis / Andreas Bertsch ... [et al.]; title: LC/MS data processing for label-free quantitative analysis / Patricia M. Palagi ... [et al.]; title: Spectral properties of correlation matrices-towards enhanced spectral clustering / Daniel Fulger and Enrico Scalas; title: Standards, databases, and modeling tools in systems biology / Michael Kohl; title: Modeling of cellular processes : methods, data, and requirements / Thomas Millat ... [et al.].