Bioinformatics
Subtitle: high performance parallel computer architectures
By: edited by Bertil Schmidt.
Contributors: Schmidt, Bertil.
Publisher: CRC Press
Published: 2010
Place of publication: Boca Raton
Language: eng
Number of pages: 356
ISBN-13: 9781439814888
Subjects: Bioinformatics -- Data processing; Parallel processing (Electronic computers)
Notes: Includes bibliographical references and index.
Table of contents: title: Algorithms for bioinformatics (Bertil Schmidt); title: Introduction to GPGPUs and massively-threaded programming (Rob Farber); title: FPGA: architecture and programming (Douglas Maskell); title: Parallel algorithms for alignments on the cell be (Abhinav Sarje, Srinivas Aluru); title: Orchestrating the phylogenetic likelihood function on emerging parallel architectures (Alexandros Stamatakis); title: Parallel bioinformatics algorithms for CUDA-enabled GPUs (Yongchao Liu, Bertil Schmidt, Douglas Maskell); title: CUDA error correction method for high-throughput short-read sequencing data (Haixiang Shi, Weiguo Liu, Bertil Schmidt); title: FPGA acceleration of seeded similarity search (Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger Chamberlain); title: Seed-based parallel protein sequence comparison combining multithreading, GPU and FPGA technologies (Dominique Lavenier, Van-Hoa Nguyen); title: Database searching with profile hidden markov models on reconfigurable and many-core architectures (John Paul Walters, Vipin Chaudhary, Bertil Schmidt); title: Cobacobana: a massively parallel FPGA-based computer architecture (Manfred Schimmler, Lars Wienbrandt, Tim Güneysu, Jost Bissel); title: Accelerating string set matching for bioinformatics using FPGA hardware (Yoginder S. Dandass); title: Reconfigurable neural system and its application to dimeric protein binding site identification (Feng Lin, Maria Stepanova); title: Parallel FPGA search engine for protein identification (Daniel Coca, Istvan Bogdan, RoBert J. Beynong).