Bioinformatics for high throughput sequencing
By: Naiara Rodríguez-Ezpeleta, Michael Hackenberg, Ana M. Aransay, editors
Publisher: Springer
Published: 2012
Place of publication: New York, NY
Language: eng
Number of pages: 255
ISBN-13: 9781461407812
Subjects: Sequence alignment (Bioinformatics); Data processing; Genomics
Notes: Includes bibliographical references and index.
Table of contents: title: Overview of sequencing technology platforms / Samuel Myllykangas, Jason Buenrostro, and Hanlee P. Ji; title: Applications of high-throughput sequencing / Rodrigo Goya, Irmtraud M. Meyer, and Marco A. Marra; title: Computational infrastructure and basic data analysis for high-throughput sequencing / David Sexton; title: Base-calling for bioinformaticians / Mona A. Sheikh and Yaniv Erlich; title: De novo short-read assembly / Douglas W. Bryant Jr. and Todd C. Mockler; title: Short-read mapping / Paolo Ribeca; title: DNA-protein interaction analysis (ChIP-Seq) / Geetu Tuteja; title: Generation and analysis of genome-wide DNA methylation maps / Martin Kerick, Axel Fischer, and Michal-Ruth Schweiger; title: Differential expression for RNA sequencing (RNA-Seq) data : mapping, summarization, statistical analysis, and experimental design / Matthew D. Young ... [et al.]; title: MicroRNA expression profiling and discovery / Michael Hackenberg; title: Dissecting splicing regulatory network by integrative analysis of CLIP-Seq data / Michael Q. Zhang; title: Analysis of metagenomics data / Elizabeth M. Glass and Folker Meyer; title: High-throughput sequencing data analysis software : current state and future developments / Konrad Paszkiewicz and David J. Studholme.