Bioinformatics for comparative proteomics
By: edited by Cathy H. Wu, Chuming Chen
Series: Springer protocols; Methods in molecular biology -- 694
Publisher: Humana Press
Published: 2011
Place of publication: New York
Language: eng
Number of pages: 387
ISBN-13: 9781607619765; 9781607619772
Subjects: Proteomics; Laboratory Manuals; Data processing; Computational Biology
Notes: Includes bibliographical references and index.
Table of contents: title: Protein bioinformatics databases and resources / Chuming Chen, Hongzhan Huang, and Cathy H. Wu; title: A guide to UniProt for protein scientists / Claire O'Donovan and Rolf Apweiler; title: InterPro protein classification / Jennifer McDowall and Sarah Hunter; title: Reactome knowledgebase of human biological pathways and processes / Peter D'Eustachio; title: eFIP : a tool for mining functional impact of phosphorylation from literature / Cecilia N. Arighi ... [et al.]; title: A tutorial on protein ontology resources for proteomic studies / Cecilia N. Arighi; title: Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase / Sona Vasudevan ... [et al.]; title: Modeling mass spectrometry-based protein analysis / Jan Eriksson and David Fenyö; title: Protein identification from tandem mass spectra by database searching / Nathan J. Edwards; title: LC-MS data analysis for differential protein expression detection / Rency S. Varghese and Habtom W. Ressom; title: Protein identification by spectral networks analysis / Nuno Bandeira; title: Software pipeline and data analysis for MS/MS proteomics : the trans-proteomic pipeline / Andrew Keller and David Shteynberg; title: Analysis of high-throughput ELISA microarray data / Amanda M. White, Don S. Daly, and Richard C. Zangar; title: Proteomics databases and repositories / Lennart Martens; title: Preparing molecular interaction data for publication / Sandra Orchard and Henning Hermjakob; title: Submitting proteomics data to PRIDE using PRIDE converter / Harald Barsnes ... [et al.]; title: Automated data integration and determination of posttranslational modifications with the protein inference engine / Stuart R. Jefferys and Morgan C. Giddings; title: An integrated top-down and bottom-up strategy for characterization of protein isoforms and modifications / Si Wu ... [et al.]; title: Phosphoproteome resource for systems biology research / Bernd Bodenmiller and Ruedi Aebersold; title: Protein-centric data integration for functional analysis of comparative proteomics data / Peter B. McGarvey ... [et al.]; title: Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks / Patrick May ... [et al.]; title: Time series proteome profiling / Catherine A. Formolo ... [et al.].