Plant epigenetics
Subtitle: methods and protocols
By: edited by Igor Kovalchuk, Franz J. Zemp
Series: Springer protocols; Methods in molecular biology -- v. 631; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 631.
Publisher: Humana Press
Published: 2010
Place of publication: New York
Language: eng
Number of pages: 273
ISBN-13: 9781607616450; 9781607616467
Subjects: Epigenesis; Plant genetic regulation
Notes: Includes bibliographical references and index.
Table of contents: title: Analysis of DNA methylation in plants by bisulfite sequencing / Andrea Foerster and Ortrun Mittelsten Scheid; title: Analysis of bisulfite sequencing data from plant DNA using CyMATE / Andrea M. Foerster ...[et al.]; title: Analysis of locus-specific changes in methylation patterns using a COBRA (combined bisulfite restriction analysis) assay / Alex Boyko and Igor Kovalchuk; title: Detection of changes in global genome methylation using the cytosine-extension assay /  Alex Boyko and Igor Kovalchuk; title: In situ analysis of DNA methylation in plants / Palak Kathiria and Igor Kovalchuk; title: Analysis of mutation/rearrangement frequencies and methylation patterns at a given DNA locus using restriction fragment length polymorphism / Alex Boyko and Igor Kovalchuk; title: Isoschizomers and amplified fragment length polymorphism for the detection of specific cytosine methylation changes / Leonor Ruiz-García ... [et al.]; title: Analysis of small RNA populations using hybridization to DNA tiling arrays / Martine Boccara ... [et al.]; title: Northern blotting techniques for small RNAs / Todd Blevins; title: qRT-PCR of small RNAs / Erika Varkonyi-Gasic and Roger P. Hellens; title: Cloning new small RNA sequences / Yuko Tagami, Naoko Inaba, and Yuichiro Watanabe; title: Genome-wide mapping of protein-DNA interaction by chromatin immunoprecipitatino and DNA microarray hybridization (ChIP-chip). Part A : ChiP-chip molecular methods / Julia J. Reimer and Franziska Turck. Part B : ChIP-chip data analysis / Ulrike Göbel, Julia Reimer, and Franziska Turck; title: Metaanalysis of ChIP-chip data / Julia Engelhorn and Franziska Turck; title: Chromatin immunoprecipitation protocol for histone modifications and protein-DNA binding analyses in Arabidopsis / Stéphane Pien and Ueli Grossniklaus; title: cDNA libraries for virus-induced gene silencing / Andrea T. Todd, Enwu Liu, and Jonathan E. Page; title: Detection and quantification of DNA strand breaks using the ROPS (random oligonucleotide primed synthesis) assay / Alex Boyko and Igor Kovalchuk; title: Reporter gene-based recombination lines for studies of genome stability / Palak Kathiria and Igor Kovalchuk; title: Plant transgenesis / Alicja Ziemienowicz.