Mass spectrometry data analysis in proteomics
By: edited by Rune Matthiesen, Institute of Molecular Pathology, Universidade do Porto, Porto, Portugal
Edition: Second edition.
Series: Methods in molecular biology -- 1007; Springer protocols; Methods in molecular biology (Clifton, N.J.) -- v. 1007.; Springer protocols (Series)
Publisher: Humana Press
Published: 2013
Place of publication: New York
Language: eng
Number of pages: 405
ISBN-13: 9781627033916; 9781627033923
Copyright date: 2013
Subjects: Proteomics; Methodology; Mass spectrometry; Mass Spectrometry; Methods; Expressed Sequence Tags
Notes: Includes bibliographical references and index.
Table of contents: title: Introduction to mass spectrometry-based proteomics / Rune Matthiesen and Jakob Bunkenborg; title: LC-MS spectra processing / Rune Matthiesen; title: Isotopic distributions / Alan L. Rockwood and Magnus Palmblad; title: Retention time prediction and protein identification / Alex A. Henneman and Magnus Palmblad; title: Algorithms for database-dependent search of MS/MS data / Rune Matthiesen; title: Interpretation of tandem mass spectra of posttranslationally modified peptides / Jakob Bunkenborg and Rune Matthiesen; title: Improving peptide identification using empirical scoring systems / Robert J. Chalkley; title: Methods and algorithms for quantitative proteomics by mass spectrometry / Rune Matthiesen and Ana Sofia Carvalho; title: Computational approaches to selected reaction monitoring assay design / Conrad Bessant and Jun Fan; title: Feature celection and machine learning with mass spectrometry data / Susmita Datta; title: Considerations in the analysis of hydrogen exchange mass spectrometry data / Thomas E. Wales, Michael J. Eggertson, and John R. Engen; title: Permethylated n-glycan analysis with mass spectrometry / Zhenxin Lin and David M. Lubman; title: Mass spectrometry methods for studying glycosylation in cancer / Hugo Osorio and Celso A. Reis; title: Proteomics data exchange and storage : the need for common standards and public repositories / Rafael C. Jimenez and Juan Antonio Vizcaıno; title: Tools for protein posttranslational modifications analysis :  FAK, a case study / Catarina Fonseca ... [et al.]; title: Proteomic strategies to characterize signaling pathways / H.C. Harsha, Sneha M. Pinto, and Akhilesh Pandey; title: Simple proteomics data analysis in the object-oriented powershell / Yassene Mohammed and Magnus Palmblad.