Immunoinformatics
By: edited by Rajat K. De, Indian Statistical Institute, Kolkata, West Bengal, India, Namrata Tomar, Indian Statistical Institute, Kolkata, West Bengal, India
Edition: Second edition.
Series: Methods in molecular biology -- 1184; Springer protocols; Methods in molecular biology -- v. 1184.; Springer protocols (Series); Methods in molecular biology (Clifton, N.J.) -- v. 1184.; Springer protocols (Series)
Publisher: Humana Press
Published: 2014
Place of publication: New York
Language: eng
Number of pages: 586
ISBN-13: 9781493911141; 9781493911158
Copyright date: 2014
Subjects: Allergy and Immunology; Tissus; Computational Biology; Immunoinformatics; Cellules souches; Immune System; Informatics; Régénération; Laboratory Manuals; Systems Biology
Notes: Includes bibliographical references and index.
Table of contents: title: Part I:; title: Immunoinformatics: transition from basic biology to informatics  -- -- 1.; title: A brief outline of the immune system   -- Namrata Tomar and Rajat K. De -- 2.; title: Crosstalk between the metabolic and immune systems   -- Namrata Tomar and Rajat K. De -- 3.; title: Immunoinformatics: a brief review   -- Namrata Tomar and Rajat K. De -- Part II: Databases -- 4.; title: Immunoinformatics of the V, C and G domains: IMGT® definitive system for IG, TR and IgSF, MH and MhSF   -- Marie-Paule Lefranc -- 5.; title: IMGT/HLA and the immuno polymorphism database   -- James Robinson, Jason A. Halliwell, and Steven G.E. Marsh -- 6.; title: Databases for T-cell epitopes   -- Chun-Wei Tung -- 7.; title: Databases for B-cell epitopes   -- Juan Liu and Wen Zhang -- 8.; title: Antigen-Antibody Interaction Database (AgAbDb): a compendium of antigen-antibody interactions   -- Urmila Kulkarni-Kale, Snehal Raskar-Renuse, Girija Natekar-Kalantre, and Smita A. Saxena -- 9.; title: Allergen databases   -- Gaurab Sircar, Debasree Sarkar, Swati Gupta Bhattacharya, and Sudipto Saha -- Part III:; title: Tools for prediction  -- -- 10.; title: Prediction of conformational B-cell epitopes   -- Wen Zhang, Yanqing Niu, Yi Xiong, and Meng Ke -- 11.; title: Computational prediction of B cell epitopes from antigen sequences   -- Jianzhao Gao and Lukasz Kurgan -- 12.; title: Machine learning based methods for prediction of linear B-cell epitopes   -- Hsin-Wei Wang and Tun-Wen Pai -- 13.; title: Mimotope-based prediction of B-cell epitopes   -- Jian Huang, Bifung He, and Peng Zhou -- 14.; title: Hybrid methods for B-cell epitope prediction: approaches to the development and utilization of computational tools for practical applications   -- Salvador Eugenio C. Caoili -- 15.; title: Building classifier ensembles for B-cell epitope prediction   -- Yasser El-Manzalawy and Vasant Honavar -- 16.; title: Multiplex peptide-based B-cell epitope mapping   -- Sanne M.M. Hensen, Merel Derksen, and Ger J.M. Pruijn -- 17.; title: Classification of Human Leukocyte Antigen (HLA) supertypes   -- Mingjun Wang and Mogens H. Claesson -- 18.; title: Customized predictions of peptide-MHC binding and T-cell epitopes using EPIMHC   -- Magdalena Molero-Abraham, Esther M. Lafuente, and Pedro Reche -- 19.; title: T-cell epitope prediction methods: an overview   -- Dattatraya V. Desai and Urmila Kulkarni-Kale -- 20.; title: Computational antigenic epitope prediction by calculating electrostatic desolvation penalties of protein surfaces   -- Sebastien Fiorucci and Martin Zacharias -- 21.; title: In silico prediction of allergenic proteins   -- Gaurab Sircar, Bodhisattwa Saha, Swati Gupta Bhattacharya, and Sudipto Saha -- 22.; title: Prediction of virulence factors using bioinformatics approaches   -- Rupanjali Chaudhuri and Srinivasan Ramachandran -- Part IV:; title: Systems biology approaches in immunoinformatics  -- -- 23.; title: A systems biology approach to study systemic inflammation   -- Bor-Sen Chen and Chia-Chou Wu -- 24.; title: Procedures for mucosal immunization and analyses of cellular immune response to candidate HIV vaccines in murine and nonhuman primate models   -- Shailbala Singh, Pramod Nehete, Patrick Hanley, Bharti Nehete, Guojun Yang, Hong He, Scott M. Anthony, Kimberly Schluns, and K. Jagannadha Sastry -- 25.; title: Immunoinformatics and systems biology in personalized medicine   -- Guillermo Lopez-Campos, Jesús F. Bermejo-Martin, Raquel Almansa, and Fernando Martin-Sanchez -- Part V:; title: Applications of immunoinformatics  -- -- 26.; title: The role of small RNAs in vaccination   -- Ajeet Chaudhary and Sunil Kumar Mukherjee -- 27.; title: Structure-based clustering of Major Histocompatibility Complex (MHC) proteins for broad-based T-cell vaccine design   -- Joo Chuan Tong, Tin Wee Tan, and Shoba Ranganathan -- 28.; title: Immunoinformatics, molecular modeling, and cancer vaccines   -- Seema Mishra and Subrata Sinha -- 29.; title: Investigating host pathogen behavior and their interaction using genome-scale metabolic network models   -- Priyanka P. Sadhukhan and Anu Raghunathan -- 30.; title: Mathematical models of HIV replication and pathogenesis  -- Dominik Wodarz.