Protein structure prediction
By: edited by Daisuke Kihara
Edition: 3rd ed.
Series: Methods in Molecular Biology -- 1137; Methods in molecular biology (Clifton, N.J.) -- v. 1137.
Publisher: Humana Press; Springer
Published: 2014
Place of publication: New York
Language: eng
Number of pages: 253
ISBN-13: 9781493903658; 9781493903665
Subjects: Protein Conformation; Probability; Probabilities; Molecular Models; Proteins; Conformation
Notes: Includes bibliographical references and index.
Table of contents: title: Protein structure modeling with MODELLER  -- Benjamin Webb and Andrej Sali; title: RaptorX server : a resource for template-based protein structure modeling  -- Morten Källberg ... [et al.]; title: MULTICOM protein tertiary structure prediction system  -- Jilong Li ... [et al.]; title: Modeling of protein side-chain conformations with RASP  -- Zhichao Miao, Yang Cao, and Taijiao Jiang; title: Direct coupling analysis for protein contact prediction  -- Faruck Morcos ... [et al.]; title: ITScorePro : an efficient scoring program for evaluating the energy scores of protein structures for structure prediction  -- Sheng-You Huang and Xiaoqin Zou; title: Assessing the quality of modelled 3D protein structures using the ModFOLD server   -- Daniel Barry Roche, Maria Teresa Buenavista,  and Liam James McGuffin; title: 3D-SURFER 2.0 : web platform for real-time search and characterization of protein surfaces  -- Yi Xiong ... [et al.]; title: SPOT-Seq-RNA : predicting protein-RNA complex structure and RNA-binding function by fold recognition and binding affinity prediction  -- Yuedong Yang ... [et al.]; title: POODLE : Tools Predicting Intrinsically Disordered Regions  of Amino Acid Sequence  -- Kana Shimizu; title: Prediction of intrinsic disorder in proteins using MFDp2   -- Marcin J. Mizianty, Vladimir Uversky, and Lukasz Kurgan; title: Modeling protein-protein complexes using the HADDOCK webserver "modeling protein complexes with HADDOCK"   -- Gydo C.P. van Zundert and Alexandre M.J.J. Bonvin; title: Predicting the structure of protein-protein complexes using the swarmdock web server  -- Mieczyslaw Torchala and Paul A. Bates; title: DOCK/PIERR : web server for structure prediction of Protein-protein complexes  -- Shruthi Viswanath, D.V.S. Ravikant, and Ron Elber; title: Pairwise and multimeric protein-protein docking using the LZerD program Suite  -- Juan Esquivel-Rodriguez ... [et al.]; title: Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model  -- Michal Jamroz, Andrzej Kolinski, and Sebastian Kmiecik.