ucscCancer/icgc_rnaseq_align — pull request #2 by akahles (2014-12-29 04:17:24+00:00)
Title: STAR alignment wrapper containing 2 pass alignment and use of metadata sheet

The code in the PR contains the wrapper implementing the 2 pass alignment approach that has been used to create the STAR alignments. Further it provides the possibility to align given the metadata sheet and an analysis ID instead of an xml file. Last, the PR updates the STAR version that is used from 2.4.0f1 to 2.4.0g1.