broadinstitute/viral-ngs — pull request #53 by dpark01 (2014-12-22 22:16:31+00:00)
Title: re-parallelize, tune pipes, cleanups

Restructure pipelines to parallelize on a per-flowcell/lane/well basis, then merge after the fact (in order to reduce recomputes each time new data arrives). Clean out some old code, begin a few new Tools.