genome/genome — pull request #321 by dufeiyu (2014-12-15 17:16:48+00:00)
Title: Command to recreate per lane bam from a merged bam

Refer to AT-658, this command tool is needed to recreate per lane bam from a merged bam. The steps involved are: extract read group bam, compare flagstat, revert markdup tag, reheader bam, create bam index, create bam md5, move outputs over.