jts/sga-extra — pull request #3 by ljdursi (2014-12-09 15:37:50+00:00)
Title: Allow whitelisting against COSMIC variants

If --cosmic argument is given, also creates a hash of entries which are present in both the candidate calls and a file in the cosmic path; a candidate call now passes if it isn't in dbSNP *or* it is in Cosmic. For Dream4, this makes a modest difference; an additional ~127 freebayes calles survive the dbSNP filter.