broadinstitute/oncotator — pull request #249 by alexramos (2014-12-05 20:22:58+00:00)
Title: Issue 217 trailing spaces in allele fields

Trailing whitespace in either ref or alt alleles in an input maflite causes a Bio.Data.CodonTable.TranslationError.

When using a VCF as input, no error is encountered but the trailing whitespace wrecks havoc on output ref and alt alleles.

This pull requests addresses both scenarios.