arq5x/bedtools2 — pull request #151 by tleonardi (2014-12-02 14:04:18+00:00)
Title: Corrected error in reporting amount of overlap (issue #150)

I think this fixes the problem that I reported. The amount of overlap was stored in _overlapBases before checking if the overlap is above the threshold, breaking the one-to-one relationship with resultSet.