BRAINSia/BRAINSTools — pull request #164 by aghayoor (2014-12-02 20:20:30+00:00)
Title: ENH: Add a python script to create inputLmkFile for BTalairach

This script creates a landmarks fcsv file (that includes AC, PC, SLA and
IRP points) to be passed to the input of BRAINSTalairach.

This scripts uses T1/T2 volume and the label map image to find
coordinates of SLA and IRP points. These two points are used by
BRAINSTalairach to find a box around "cerebrum" part of the human brain.
Also, this script uses the output landmarks file of BCD to find the
coordinates of AC and PC points.

USAGE:

BRAINSTalairachext.py \
--inputVolume \
--inputLabelsImage \
--inputLandmarksFile \
--outputTalairachLandmarksFile