chapmanb/bcbio-nextgen — pull request #671 by mjafin (2014-11-27 09:54:05+00:00)
Title: Vardict syntax updates

Hi Brad,
I've changed vardict syntax to reflect the latest codebase. Also updated the brew recipe separately. Might not need the external somatic filter anymore as with these settings VarDict doesn't output germline variants, only variants it thinks are somatic (some might not be PASSing, so it still also outputs filtered somatic variants that may have strand bias etc.)