paulstaab/jaatha — pull request #26 by paulstaab (2014-11-24 16:07:17+00:00)
Title: Jsfs only from middle

General enhancements
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- allows for an arbitrary number of parameters with variation
- now tests that temp files are removed after use

Locus Trio enhancements
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- now calls seq-gen for each locus separately
- saves the positions and locus of a trio as attribute of seg_sites matrix
- only uses the middle locus of a trio for calculation the JSFS