wtsi-npg/p4 — pull request #56 by dozy (2014-11-20 17:48:03+00:00)
Title: release 0.10

change to using teepot instead of tee or mbuffer
change to bamstreamingmarkduplicates (from bammarkduplicates2)
addition of samtools stats (both -F 0x900 and -F 0XB00) - bamcheck also still used, though now with -F 0x900
md5 for cram files
bamseqchksum outputs saved to disk