bigdatagenomics/RNAdam — pull request #46 by fnothaft (2014-11-15 20:27:13+00:00)
Title: Collect transcript lengths prior to EM

Fixes #45 by adding code to compute the transcript lengths from the GTF RDD. From here, we then collect the lengths into a map which we pass to the M stage of the EM algorithm. Additionally, the QuantifySuite was split into two Suites, and a few suites were misnamed (an extra "Test" before "Suite"), so I fixed those.