choderalab/opentis — pull request #72 by dwhswenson (2014-11-13 12:12:20+00:00)
Title: Toy dynamics: update to ipynb

Mainly involves a some improvements to plots in toy_dynamics_tis.ipynb. PR because some of this might be useful @jhprinz as he's putting together a presentation.

Also happens to contain some Simulator.py cleanup that occurred on the wrong branch (which has since been merged into the correct branch as well).