sanger-pathogens/update_pipeline — pull request #60 by sb10 (2014-11-13 10:20:35+00:00)
Title: import all QC'd bams

3 changes:

1) don't unwithdraw lanes that have been manually withdrawn (as per new column in latest VRTrack schema)
2) don't skip lanes that have failed QC in -nop mode
3) only import bam files