pbnjay/lollipops — pull request #3 by jimhavrilla (2014-11-10 19:01:10+00:00)
Title: Update to incorporate non-synonymous vs synonymous mutations

Added new field to Tick struct for color change. Fixed regex so it can actually capture three letter or one letter amino acid annotations. Turns lollipop red for non-synonymous, blue for synonymous.

For synonymous mutations the format is reference amino acid then amino acid number. For non-synonymous it is reference amino acid then amino acid number then alternate amino acid. Like so:
non-syn: E234W
syn: E234