juliema/aTRAM — pull request #150 by juliema (2014-11-10 23:16:44+00:00)
Title: Cluster Issue

On the cluster the pairedsequence retrieval subfunction does not seem to work the same as on my computer. It seems to find all the /1 reads but finds some but not all of the /2 reads.

In this code change:
Changing the way the paired sequence retrieval works.
Removed the cmd comparison.